Wall clock time and date at job start Tue Mar 31 2020 03:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47016 * 110.99597 * 2 1 4 4 C 1.53101 * 109.25402 * 177.60806 * 3 2 1 5 5 O 1.43013 * 109.25819 * 56.84764 * 4 3 2 6 6 C 1.43017 * 113.74012 * 301.32733 * 5 4 3 7 7 C 1.47015 * 111.00021 * 236.36277 * 2 1 3 8 8 H 1.09001 * 109.53702 * 62.43898 * 7 2 1 9 9 C 1.50700 * 109.50916 * 302.32645 * 7 2 1 10 10 O 1.21281 * 119.99870 * 331.29949 * 9 7 2 11 11 N 1.34773 * 120.00133 * 151.01446 * 9 7 2 12 12 C 1.46499 * 120.00159 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.46923 * 180.02562 * 12 11 9 14 14 H 1.08995 * 112.96582 * 306.68246 * 13 12 11 15 15 C 1.53943 * 113.76526 * 175.00085 * 13 12 11 16 16 C 1.53948 * 86.29038 * 222.09224 * 15 13 12 17 17 N 1.47577 * 113.76553 * 78.50892 * 13 12 11 18 18 C 1.36933 * 134.49615 * 318.93782 * 17 13 12 19 19 H 1.07999 * 120.00180 * 6.81724 * 18 17 13 20 20 C 1.38819 * 120.00111 * 186.81986 * 18 17 13 21 21 N 1.31610 * 119.99925 * 354.89795 * 20 18 17 22 22 Si 1.86798 * 119.99759 * 174.90084 * 20 18 17 23 23 H 1.48504 * 109.47159 * 94.97869 * 22 20 18 24 24 H 1.48504 * 109.47023 * 214.97208 * 22 20 18 25 25 H 1.48502 * 109.47651 * 334.97574 * 22 20 18 26 26 H 1.09005 * 109.46866 * 190.09005 * 1 2 3 27 27 H 1.08993 * 109.47270 * 310.08972 * 1 2 3 28 28 H 1.08998 * 109.47114 * 70.09207 * 1 2 3 29 29 H 1.08996 * 109.50940 * 57.67360 * 3 2 1 30 30 H 1.09000 * 109.54130 * 297.56437 * 3 2 1 31 31 H 1.09005 * 109.50254 * 296.91117 * 4 3 2 32 32 H 1.08997 * 109.50519 * 176.78435 * 4 3 2 33 33 H 1.08998 * 109.50487 * 298.74085 * 6 5 4 34 34 H 1.08992 * 109.54244 * 178.62638 * 6 5 4 35 35 H 0.97002 * 119.99908 * 0.02562 * 11 9 7 36 36 H 1.08994 * 109.47087 * 300.00526 * 12 11 9 37 37 H 1.09001 * 109.46890 * 60.00437 * 12 11 9 38 38 H 1.09005 * 113.74663 * 336.43552 * 15 13 12 39 39 H 1.09002 * 113.74162 * 107.64284 * 15 13 12 40 40 H 1.09004 * 113.77062 * 137.90564 * 16 15 13 41 41 H 1.08995 * 113.76717 * 269.30826 * 16 15 13 42 42 H 0.97001 * 119.99883 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3265 0.0603 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7849 -1.0709 7 6 1.9959 -0.7603 -1.1427 8 1 1.6828 -0.2849 -2.0723 9 6 1.4671 -2.1707 -1.0956 10 8 1.1875 -2.6782 -0.0302 11 7 1.2996 -2.8660 -2.2379 12 6 0.7861 -4.2373 -2.1921 13 6 0.6928 -4.7947 -3.6139 14 1 0.1246 -4.1520 -4.2862 15 6 0.2782 -6.2760 -3.6736 16 6 1.3545 -6.4299 -4.7634 17 7 1.9879 -5.2388 -4.1648 18 6 3.2644 -4.7444 -4.1332 19 1 3.4959 -3.8855 -3.5208 20 6 4.2611 -5.3472 -4.8884 21 7 4.0038 -6.4522 -5.5555 22 14 5.9673 -4.5900 -4.9578 23 1 6.8373 -5.2362 -3.9424 24 1 6.5463 -4.7973 -6.3095 25 1 5.8750 -3.1348 -4.6766 26 1 -0.3633 -1.0118 0.1801 27 1 -0.3633 0.6618 0.7861 28 1 -0.3633 0.3499 -0.9662 29 1 1.6133 1.9092 0.8682 30 1 1.6827 1.8833 -0.9106 31 1 3.8385 0.8644 0.9965 32 1 3.9221 2.3399 0.0030 33 1 3.8385 -1.3083 -0.1676 34 1 3.9221 -1.2991 -1.9460 35 1 1.5197 -2.4588 -3.0903 36 1 1.4603 -4.8582 -1.6022 37 1 -0.2034 -4.2396 -1.7349 38 1 0.4960 -6.8300 -2.7604 39 1 -0.7387 -6.4330 -4.0335 40 1 1.9494 -7.3383 -4.6683 41 1 0.9819 -6.2678 -5.7748 42 1 4.7004 -6.8736 -6.0830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038176669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:30 Heat of formation + Delta-G solvation = -11.376740 kcal Electronic energy + Delta-G solvation = -23401.765975 eV Core-core repulsion = 19998.179522 eV Total energy + Delta-G solvation = -3403.586453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40502 -38.72637 -37.81799 -35.68471 -34.07010 -32.24133 -31.62291 -29.08664 -28.01370 -27.57580 -24.72434 -24.31291 -23.38838 -22.31419 -21.01716 -19.98883 -19.10210 -17.46179 -16.60348 -16.53855 -16.33279 -15.82447 -15.30016 -15.07515 -14.86429 -14.49722 -14.26155 -13.91085 -13.82372 -13.46625 -13.16807 -12.79740 -12.52190 -12.37424 -11.83987 -11.78715 -11.49059 -11.34926 -11.11864 -11.02221 -10.81909 -10.78356 -10.53713 -10.08738 -9.94265 -9.78954 -9.60250 -9.27525 -8.82327 -8.64283 -8.52650 -6.90858 -5.80537 -3.12151 2.77811 3.20982 3.37421 3.42621 3.44490 3.62041 3.91127 4.41175 4.66447 4.77487 4.79482 4.92131 5.03187 5.04978 5.14934 5.32379 5.37034 5.37693 5.42340 5.55783 5.58645 5.65848 5.68388 5.81118 5.87818 5.88748 6.04473 6.27439 6.37619 6.59164 6.63026 6.68090 6.74982 6.84953 6.95590 7.22851 7.37105 7.56706 7.82811 7.95156 8.49335 9.01166 9.68375 10.57462 11.36772 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.005431 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.603706 B = 5154.292046 C = 6609.562337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.019 3.981 4 C 0.059 3.941 5 O -0.378 6.378 6 C 0.075 3.925 7 C 0.033 3.967 8 H 0.068 0.932 9 C 0.517 3.483 10 O -0.528 6.528 11 N -0.712 5.712 12 C 0.124 3.876 13 C 0.125 3.875 14 H 0.049 0.951 15 C -0.156 4.156 16 C 0.162 3.838 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.903 3.097 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.403 0.597 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 12.944 7.942 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.244 5.244 3 C -0.110 4.110 4 C -0.018 4.018 5 O -0.296 6.296 6 C -0.003 4.003 7 C -0.079 4.079 8 H 0.085 0.915 9 C 0.301 3.699 10 O -0.404 6.404 11 N -0.363 5.363 12 C 0.000 4.000 13 C 0.017 3.983 14 H 0.066 0.934 15 C -0.195 4.195 16 C 0.037 3.963 17 N -0.328 5.328 18 C -0.350 4.350 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.563 5.563 22 Si 0.734 3.266 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.205 1.205 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.237 0.763 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.597 12.402 8.907 16.633 hybrid contribution 0.556 0.960 -1.230 1.656 sum -6.041 13.362 7.677 16.552 Atomic orbital electron populations 1.22488 0.86331 1.03852 1.00026 1.61968 1.08734 1.12663 1.41061 1.22858 0.96706 0.89523 1.01873 1.22718 0.92099 0.96544 0.90427 1.88034 1.69514 1.23716 1.48340 1.22595 0.89435 0.84110 1.04111 1.22332 0.98075 0.93559 0.93953 0.91454 1.20033 0.78605 0.86929 0.84382 1.90677 1.50037 1.70400 1.29324 1.46038 1.65705 1.15858 1.08746 1.21771 0.98178 0.81191 0.98876 1.22500 0.89265 0.94755 0.91737 0.93384 1.23790 0.98514 0.95813 1.01410 1.22134 0.89255 0.92382 0.92563 1.46051 1.00931 1.24597 1.61237 1.18919 0.82911 1.11354 1.21778 0.90356 1.24798 0.98157 0.97925 0.99282 1.69831 1.32725 1.19018 1.34758 0.86240 0.84514 0.78755 0.77131 1.21595 1.21644 1.20504 0.89950 0.91132 0.95697 0.89236 0.93853 0.91968 0.88274 0.91241 0.87237 0.76294 0.90921 0.92199 0.90517 0.92812 0.91258 0.95394 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.12 60.07 0.55 0.79 16 2 N -0.52 -6.76 4.53 -235.97 -1.07 -7.83 16 3 C 0.02 0.19 5.64 -3.71 -0.02 0.17 16 4 C 0.06 0.62 7.01 37.21 0.26 0.88 16 5 O -0.38 -5.18 10.83 -35.23 -0.38 -5.56 16 6 C 0.08 1.07 6.27 37.21 0.23 1.31 16 7 C 0.03 0.46 2.36 -68.75 -0.16 0.30 16 8 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.52 8.53 6.06 -10.99 -0.07 8.46 16 10 O -0.53 -10.35 15.41 5.56 0.09 -10.27 16 11 N -0.71 -11.65 5.51 -60.30 -0.33 -11.98 16 12 C 0.12 2.18 5.54 -4.04 -0.02 2.16 16 13 C 0.13 2.34 4.33 -66.86 -0.29 2.05 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.16 -2.79 7.86 -25.81 -0.20 -2.99 16 16 C 0.16 3.65 7.42 -2.97 -0.02 3.63 16 17 N -0.60 -14.34 3.57 -170.76 -0.61 -14.95 16 18 C -0.22 -5.84 10.50 -15.06 -0.16 -6.00 16 19 H 0.08 1.97 7.79 -52.49 -0.41 1.56 16 20 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 21 N -0.92 -26.61 11.51 55.49 0.64 -25.97 16 22 Si 0.90 21.72 29.56 -169.99 -5.02 16.69 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.08 1.14 6.45 -51.93 -0.33 0.81 16 27 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 28 H 0.02 0.27 8.12 -51.93 -0.42 -0.15 16 29 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.40 6.28 8.47 -40.82 -0.35 5.93 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -31.75 340.15 -8.50 -40.25 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.94 Total: 3.96 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 0.00 Total: 10.53 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -1.37 Total: -60.73 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.30 Total: -15.83 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.75 -8.50 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038176669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.871 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds