Wall clock time and date at job start Tue Mar 31 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47015 * 111.00031 * 2 1 4 4 C 1.53104 * 109.25833 * 182.39525 * 3 2 1 5 5 O 1.43018 * 109.25459 * 303.15085 * 4 3 2 6 6 C 1.43012 * 113.74025 * 58.66647 * 5 4 3 7 7 C 1.47012 * 111.00195 * 123.63388 * 2 1 3 8 8 H 1.08999 * 109.54205 * 297.56350 * 7 2 1 9 9 C 1.50702 * 109.50516 * 57.67099 * 7 2 1 10 10 O 1.21280 * 120.00361 * 27.89773 * 9 7 2 11 11 N 1.34781 * 119.99892 * 207.89588 * 9 7 2 12 12 C 1.46497 * 119.99769 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47098 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.96358 * 304.66764 * 13 12 11 15 15 C 1.53947 * 113.77175 * 172.98443 * 13 12 11 16 16 C 1.53944 * 86.29161 * 222.09553 * 15 13 12 17 17 N 1.47588 * 113.76861 * 76.34124 * 13 12 11 18 18 C 1.36936 * 134.49402 * 318.93788 * 17 13 12 19 19 H 1.08003 * 119.99744 * 7.31268 * 18 17 13 20 20 C 1.38803 * 119.99838 * 187.32020 * 18 17 13 21 21 N 1.31615 * 120.00743 * 7.18354 * 20 18 17 22 22 Si 1.86811 * 119.99741 * 187.18634 * 20 18 17 23 23 H 1.48498 * 109.46902 * 84.98397 * 22 20 18 24 24 H 1.48502 * 109.47121 * 204.98204 * 22 20 18 25 25 H 1.48493 * 109.46951 * 324.98006 * 22 20 18 26 26 H 1.08998 * 109.47053 * 298.00784 * 1 2 3 27 27 H 1.09000 * 109.47307 * 58.00849 * 1 2 3 28 28 H 1.09002 * 109.46889 * 178.00989 * 1 2 3 29 29 H 1.08998 * 109.50989 * 62.45772 * 3 2 1 30 30 H 1.09001 * 109.53958 * 302.34820 * 3 2 1 31 31 H 1.08990 * 109.50203 * 183.21729 * 4 3 2 32 32 H 1.08999 * 109.54090 * 63.10444 * 4 3 2 33 33 H 1.09004 * 109.50366 * 181.39325 * 6 5 4 34 34 H 1.09000 * 109.50142 * 61.27060 * 6 5 4 35 35 H 0.97000 * 119.99849 * 359.97438 * 11 9 7 36 36 H 1.09000 * 109.46991 * 299.99247 * 12 11 9 37 37 H 1.08995 * 109.47942 * 59.99713 * 12 11 9 38 38 H 1.09005 * 113.73872 * 336.43685 * 15 13 12 39 39 H 1.08998 * 113.73861 * 107.63613 * 15 13 12 40 40 H 1.09001 * 113.77308 * 137.91117 * 16 15 13 41 41 H 1.09004 * 113.76504 * 269.19672 * 16 15 13 42 42 H 0.96992 * 120.00848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 -0.0604 5 8 4.0175 0.5574 1.0402 6 6 3.5249 -0.7849 1.0709 7 6 1.9959 -0.7602 1.1427 8 1 1.6828 -0.2849 2.0723 9 6 1.4670 -2.1706 1.0957 10 8 1.1735 -2.6730 0.0316 11 7 1.3202 -2.8736 2.2362 12 6 0.8066 -4.2448 2.1903 13 6 0.7389 -4.8118 3.6099 14 1 1.6939 -4.7634 4.1331 15 6 0.0528 -6.1872 3.6967 16 6 -0.6433 -5.6487 4.9597 17 7 -0.3988 -4.3026 4.4001 18 6 -0.9895 -3.0766 4.5520 19 1 -0.6867 -2.2501 3.9263 20 6 -1.9774 -2.8962 5.5103 21 7 -2.2478 -3.8588 6.3662 22 14 -2.9232 -1.2870 5.5851 23 1 -4.0584 -1.3352 4.6289 24 1 -3.4433 -1.0820 6.9609 25 1 -2.0199 -0.1648 5.2251 26 1 -0.3633 0.4826 0.9073 27 1 -0.3634 0.5444 -0.8716 28 1 -0.3633 -1.0271 -0.0357 29 1 1.6828 1.8826 0.9110 30 1 1.6134 1.9098 -0.8678 31 1 3.9221 2.3398 -0.0030 32 1 3.8392 0.8647 -0.9965 33 1 3.9222 -1.2984 1.9465 34 1 3.8385 -1.3083 0.1678 35 1 1.5553 -2.4719 3.0872 36 1 -0.1909 -4.2447 1.7509 37 1 1.4704 -4.8615 1.5845 38 1 -0.6303 -6.3896 2.8717 39 1 0.7415 -7.0097 3.8898 40 1 -1.6987 -5.9130 5.0263 41 1 -0.0962 -5.8473 5.8814 42 1 -2.9383 -3.7329 7.0356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038176670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:32 Heat of formation + Delta-G solvation = -36.869758 kcal Electronic energy + Delta-G solvation = -23411.959596 eV Core-core repulsion = 20007.267683 eV Total energy + Delta-G solvation = -3404.691913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55965 -40.05548 -39.29186 -36.68390 -35.49410 -34.23519 -32.66653 -30.12916 -29.86078 -29.01553 -25.80954 -25.30090 -25.28433 -23.77170 -22.15728 -21.25357 -20.73716 -18.91615 -18.11203 -17.66325 -17.49341 -17.06778 -16.90832 -16.26074 -15.95558 -15.84238 -15.70194 -15.55216 -14.96874 -14.86707 -14.68581 -14.02029 -13.75862 -13.41821 -13.30169 -13.15724 -13.00002 -12.74779 -12.67887 -12.64799 -12.29921 -12.27368 -11.90179 -11.75710 -11.53114 -11.35267 -11.00410 -10.81947 -10.59563 -10.04064 -9.53154 -8.89449 -7.90494 -5.20048 1.40195 1.42595 1.48797 1.49224 2.02696 2.44935 2.63057 2.91151 3.32036 3.36805 3.67982 3.68288 3.88541 3.90868 3.98963 4.11073 4.19711 4.21894 4.35876 4.40985 4.46416 4.56281 4.62072 4.64412 4.72008 4.80519 4.86766 4.88445 4.92336 5.06350 5.11235 5.31072 5.42822 5.56926 5.64510 5.74253 5.83352 5.94783 6.01337 6.52223 6.93338 7.18658 7.63798 8.60148 9.27897 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.005217 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.018590 B = 5365.531778 C = 6356.836359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.531 5.531 3 C 0.016 3.984 4 C 0.058 3.942 5 O -0.390 6.390 6 C 0.084 3.916 7 C 0.033 3.967 8 H 0.069 0.931 9 C 0.519 3.481 10 O -0.561 6.561 11 N -0.710 5.710 12 C 0.135 3.865 13 C 0.131 3.869 14 H 0.070 0.930 15 C -0.130 4.130 16 C 0.157 3.843 17 N -0.628 5.628 18 C -0.212 4.212 19 H 0.083 0.917 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.962 3.038 23 H -0.293 1.293 24 H -0.297 1.297 25 H -0.269 1.269 26 H 0.025 0.975 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.407 0.593 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.023 0.977 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.043 6.880 -11.297 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.257 5.257 3 C -0.111 4.111 4 C -0.019 4.019 5 O -0.308 6.308 6 C 0.006 3.994 7 C -0.079 4.079 8 H 0.087 0.913 9 C 0.305 3.695 10 O -0.439 6.439 11 N -0.361 5.361 12 C 0.010 3.990 13 C 0.025 3.975 14 H 0.087 0.913 15 C -0.168 4.168 16 C 0.031 3.969 17 N -0.355 5.355 18 C -0.341 4.341 19 H 0.101 0.899 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.791 3.209 23 H -0.220 1.220 24 H -0.224 1.224 25 H -0.194 1.194 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.129 0.871 31 H 0.146 0.854 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.242 0.758 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.917 6.591 -12.213 18.292 hybrid contribution -1.569 1.160 1.565 2.501 sum 10.348 7.751 -10.648 16.749 Atomic orbital electron populations 1.22428 0.86510 1.02134 1.01418 1.62031 1.08733 1.14402 1.40515 1.22994 0.97050 0.88063 1.03001 1.22940 0.91651 0.97650 0.89623 1.88003 1.69570 1.23596 1.49635 1.22522 0.88193 0.84703 1.03955 1.22329 0.98953 0.91928 0.94719 0.91318 1.20447 0.77788 0.87629 0.83640 1.90659 1.51192 1.71489 1.30587 1.46020 1.65105 1.15761 1.09234 1.21552 0.98185 0.81771 0.97518 1.22676 0.92113 0.92505 0.90227 0.91288 1.23552 0.99323 0.95701 0.98241 1.22078 0.97365 0.83634 0.93782 1.46539 1.32340 1.05251 1.51352 1.19241 1.14106 0.87909 1.12844 0.89945 1.25488 1.02167 1.00660 0.97735 1.69986 1.35093 1.34226 1.20909 0.85341 0.78990 0.80356 0.76179 1.22004 1.22350 1.19372 0.95614 0.88959 0.92941 0.93850 0.87074 0.85436 0.91689 0.86330 0.91834 0.75758 0.93889 0.89905 0.90144 0.88635 0.95531 0.95862 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.21 127.69 1.18 1.80 16 2 N -0.53 -13.76 4.53 -900.47 -4.08 -17.84 16 3 C 0.02 0.31 5.66 86.32 0.49 0.80 16 4 C 0.06 0.98 7.01 72.02 0.50 1.49 16 5 O -0.39 -8.63 10.83 -148.98 -1.61 -10.25 16 6 C 0.08 1.90 6.27 72.01 0.45 2.35 16 7 C 0.03 0.88 2.38 44.18 0.10 0.99 16 8 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 9 C 0.52 16.68 5.97 87.66 0.52 17.20 16 10 O -0.56 -21.67 15.39 -3.03 -0.05 -21.72 16 11 N -0.71 -22.39 5.33 -463.06 -2.47 -24.86 16 12 C 0.13 4.48 5.54 86.38 0.48 4.96 16 13 C 0.13 4.62 4.33 45.09 0.20 4.82 16 14 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 15 C -0.13 -4.30 7.86 31.25 0.25 -4.05 16 16 C 0.16 7.07 7.31 86.44 0.63 7.70 16 17 N -0.63 -29.74 3.57 -690.80 -2.47 -32.21 16 18 C -0.21 -11.20 10.49 84.03 0.88 -10.31 16 19 H 0.08 4.14 7.61 -2.91 -0.02 4.12 16 20 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 21 N -0.95 -56.88 11.78 21.65 0.26 -56.63 16 22 Si 0.96 45.42 29.56 68.60 2.03 47.44 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.74 6.17 -2.39 -0.01 1.72 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.41 12.26 8.47 -92.71 -0.79 11.48 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.08 2.63 8.10 -2.38 -0.02 2.61 16 39 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.03 1.35 7.71 -2.39 -0.02 1.33 16 41 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -69.52 340.20 -2.03 -71.54 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.22 Total: 20.09 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 6.15 Total: 24.43 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -8.76 Total: -131.54 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.66 Total: -31.97 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -69.52 -2.03 -71.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038176670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.674 kcal (2) G-P(sol) polarization free energy of solvation -69.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds