Wall clock time and date at job start Tue Mar 31 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47440 * 110.99676 * 2 1 4 4 C 1.54317 * 107.23368 * 236.73977 * 3 2 1 5 5 C 1.55144 * 103.01861 * 337.71644 * 4 3 2 6 6 C 1.47842 * 111.00238 * 239.15389 * 2 1 3 7 7 H 1.08998 * 110.37031 * 27.53480 * 6 2 1 8 8 C 1.50696 * 110.37213 * 265.30477 * 6 2 1 9 9 O 1.21279 * 120.00387 * 341.44861 * 8 6 2 10 10 N 1.34783 * 119.99990 * 161.45378 * 8 6 2 11 11 C 1.46502 * 120.00047 * 179.97438 * 10 8 6 12 12 H 1.08998 * 110.64043 * 36.68996 * 11 10 8 13 13 C 1.54328 * 110.72019 * 273.54569 * 11 10 8 14 14 N 1.47013 * 107.26913 * 219.44462 * 13 11 10 15 15 C 1.36938 * 125.64659 * 178.90892 * 14 13 11 16 16 H 1.07998 * 120.00361 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00215 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99693 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47225 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47254 * 119.99910 * 19 17 15 22 22 H 1.48504 * 109.46745 * 239.99482 * 19 17 15 23 23 C 1.47417 * 108.70703 * 358.94353 * 14 13 11 24 24 C 1.54912 * 104.83235 * 24.12742 * 23 14 13 25 25 H 1.09000 * 111.00625 * 204.91587 * 24 23 14 26 26 O 1.42905 * 111.00411 * 81.06684 * 24 23 14 27 27 H 1.09000 * 109.46730 * 60.13120 * 1 2 3 28 28 H 1.09006 * 109.46640 * 180.12497 * 1 2 3 29 29 H 1.08990 * 109.47139 * 300.12605 * 1 2 3 30 30 H 1.09000 * 109.89463 * 117.33566 * 3 2 1 31 31 H 1.09001 * 110.02673 * 356.21799 * 3 2 1 32 32 H 1.08999 * 110.70846 * 96.09223 * 4 3 2 33 33 H 1.09000 * 110.71111 * 219.33808 * 4 3 2 34 34 H 1.09002 * 110.99593 * 153.74641 * 5 4 3 35 35 H 1.09000 * 110.99290 * 277.56635 * 5 4 3 36 36 H 0.96999 * 119.99736 * 0.02562 * 10 8 6 37 37 H 1.09001 * 109.88408 * 338.86640 * 13 11 10 38 38 H 1.08997 * 109.87662 * 99.87053 * 13 11 10 39 39 H 0.97001 * 120.00140 * 180.02562 * 18 17 15 40 40 H 1.08997 * 110.37068 * 142.96684 * 23 14 13 41 41 H 1.09007 * 110.37250 * 265.17855 * 23 14 13 42 42 H 0.96698 * 113.99600 * 67.80117 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3048 0.0444 -1.5437 6 6 1.9989 -0.7077 -1.1850 7 1 1.2890 -0.6502 -2.0101 8 6 2.2949 -2.1463 -0.8479 9 8 2.4169 -2.4852 0.3101 10 7 2.4242 -3.0565 -1.8336 11 6 2.7125 -4.4551 -1.5060 12 1 2.1929 -4.7512 -0.5947 13 6 4.2327 -4.6808 -1.3657 14 7 4.5383 -5.9841 -1.9734 15 6 5.7831 -6.5460 -2.0731 16 1 6.6446 -6.0222 -1.6859 17 6 5.9380 -7.7883 -2.6728 18 7 4.8882 -8.4264 -3.1452 19 14 7.6360 -8.5550 -2.8082 20 1 8.6405 -7.6428 -2.2047 21 1 7.6512 -9.8541 -2.0891 22 1 7.9660 -8.7772 -4.2389 23 6 3.2829 -6.5857 -2.4584 24 6 2.3306 -5.3855 -2.6874 25 1 1.2878 -5.6955 -2.6193 26 8 2.5943 -4.7546 -3.9423 27 1 -0.3633 0.5118 -0.8912 28 1 -0.3633 -1.0277 0.0022 29 1 -0.3633 0.5157 0.8888 30 1 2.5697 1.5541 0.9105 31 1 1.1771 2.0911 -0.0676 32 1 2.3744 1.9545 -2.0695 33 1 3.8001 2.1034 -0.9905 34 1 3.5497 -0.0797 -2.5986 35 1 4.1302 -0.2833 -0.9117 36 1 2.3271 -2.7854 -2.7598 37 1 4.7744 -3.8921 -1.8879 38 1 4.5109 -4.6861 -0.3118 39 1 4.9962 -9.2946 -3.5639 40 1 3.4539 -7.1181 -3.3939 41 1 2.8711 -7.2610 -1.7083 42 1 2.3714 -5.2983 -4.7102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083368060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:42 Heat of formation + Delta-G solvation = -40.510344 kcal Electronic energy + Delta-G solvation = -23273.719660 eV Core-core repulsion = 19868.869879 eV Total energy + Delta-G solvation = -3404.849781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.12181 -38.57893 -37.29989 -34.70498 -33.83928 -32.28070 -31.66566 -29.79746 -28.32576 -26.85964 -25.83280 -24.48600 -22.44673 -21.30223 -20.59202 -19.94722 -19.53001 -17.55283 -16.96997 -16.73179 -16.11262 -15.28266 -15.15286 -14.77826 -14.51988 -14.12254 -14.02781 -13.56489 -13.46899 -13.05297 -12.92182 -12.79424 -12.53644 -12.16991 -11.78211 -11.67474 -11.43427 -11.36931 -11.29223 -11.03101 -10.94592 -10.84406 -10.56113 -10.31459 -9.99998 -9.82338 -9.49719 -9.20040 -8.68050 -8.58452 -8.42256 -6.82273 -5.67621 -3.07045 2.91613 3.22992 3.40414 3.46313 3.48833 4.01424 4.38391 4.47398 4.51357 4.66212 4.72092 4.96196 5.10573 5.17971 5.19520 5.30879 5.38418 5.41448 5.48655 5.52376 5.60347 5.64712 5.73444 5.76803 5.83278 5.96615 6.01390 6.09397 6.32047 6.63509 6.67953 6.76883 6.85496 7.02906 7.28785 7.59058 7.74065 7.95010 8.14164 8.33283 8.63303 9.20383 9.81448 10.45064 11.37650 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030180 B = 0.003849 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.551257 B = 7273.791772 C = 7618.094863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.512 5.512 3 C 0.044 3.956 4 C -0.141 4.141 5 C -0.117 4.117 6 C 0.055 3.945 7 H 0.073 0.927 8 C 0.516 3.484 9 O -0.521 6.521 10 N -0.711 5.711 11 C 0.145 3.855 12 H 0.098 0.902 13 C 0.132 3.868 14 N -0.597 5.597 15 C -0.214 4.214 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.927 5.927 19 Si 0.916 3.084 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.127 3.873 24 C 0.068 3.932 25 H 0.058 0.942 26 O -0.561 6.561 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.405 0.595 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.251 0.749 40 H 0.115 0.885 41 H 0.022 0.978 42 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.780 17.237 -0.563 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.236 5.236 3 C -0.084 4.084 4 C -0.179 4.179 5 C -0.155 4.155 6 C -0.057 4.057 7 H 0.091 0.909 8 C 0.300 3.700 9 O -0.395 6.395 10 N -0.364 5.364 11 C 0.040 3.960 12 H 0.116 0.884 13 C 0.005 3.995 14 N -0.323 5.323 15 C -0.343 4.343 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.577 5.577 19 Si 0.747 3.253 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.001 3.999 24 C 0.007 3.993 25 H 0.075 0.925 26 O -0.367 6.367 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.240 0.760 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.062 0.938 40 H 0.132 0.868 41 H 0.040 0.960 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -9.235 17.036 1.087 19.408 hybrid contribution 0.278 -0.439 -1.532 1.618 sum -8.956 16.597 -0.445 18.865 Atomic orbital electron populations 1.22549 0.87202 1.02365 1.00444 1.63072 1.07907 1.13552 1.39063 1.22851 0.97962 0.88730 0.98829 1.22794 1.00211 0.96845 0.98043 1.22660 0.96337 0.94060 1.02469 1.22512 0.97887 0.92835 0.92437 0.90870 1.20296 0.77268 0.86653 0.85779 1.90690 1.48948 1.80338 1.19561 1.45857 1.72246 1.08485 1.09822 1.22090 0.97411 0.79487 0.97040 0.88436 1.21590 0.91984 0.89565 0.96370 1.44296 1.03727 1.16408 1.67871 1.19161 0.83783 0.99854 1.31469 0.90366 1.24753 0.97694 0.97152 1.01216 1.69732 1.27055 1.15374 1.45524 0.85963 0.83102 0.78965 0.77293 1.20522 1.21768 1.21789 1.22592 0.84125 0.90919 1.02249 1.23565 0.97644 0.94764 0.83296 0.92463 1.86240 1.89535 1.45710 1.15195 0.95578 0.91311 0.91050 0.90159 0.92520 0.91260 0.90210 0.89811 0.89755 0.76015 0.95345 0.95450 0.93827 0.86757 0.96006 0.77408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.12 60.07 0.55 0.78 16 2 N -0.51 -6.33 4.69 -232.98 -1.09 -7.43 16 3 C 0.04 0.42 6.89 -2.84 -0.02 0.40 16 4 C -0.14 -1.18 6.94 -24.91 -0.17 -1.35 16 5 C -0.12 -1.25 6.49 -24.59 -0.16 -1.41 16 6 C 0.06 0.68 2.83 -67.34 -0.19 0.49 16 7 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 8 C 0.52 8.40 7.12 -10.98 -0.08 8.32 16 9 O -0.52 -10.67 16.32 5.56 0.09 -10.58 16 10 N -0.71 -11.36 5.09 -52.03 -0.26 -11.62 16 11 C 0.15 2.76 3.12 -66.09 -0.21 2.55 16 12 H 0.10 1.92 7.69 -51.93 -0.40 1.52 16 13 C 0.13 3.01 6.99 -3.07 -0.02 2.99 16 14 N -0.60 -15.59 3.39 -170.08 -0.58 -16.17 16 15 C -0.21 -6.09 10.27 -15.06 -0.15 -6.25 16 16 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 18 N -0.93 -26.62 10.09 55.49 0.56 -26.06 16 19 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.13 3.00 5.62 -2.53 -0.01 2.98 16 24 C 0.07 1.24 4.28 -24.58 -0.11 1.14 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 O -0.56 -9.49 12.23 -35.23 -0.43 -9.92 16 27 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.44 7.59 -51.93 -0.39 0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 36 H 0.40 5.75 7.57 -40.82 -0.31 5.45 16 37 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16 41 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.38 5.14 9.12 45.56 0.42 5.56 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -33.50 337.08 -8.33 -41.83 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.00 Total: 7.47 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -0.67 Total: 10.17 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -1.38 Total: -61.28 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.34 Total: -20.50 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.50 -8.33 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083368060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.320 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds