Wall clock time and date at job start Tue Mar 31 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47440 * 110.99676 * 2 1 4 4 C 1.54317 * 107.23368 * 236.73977 * 3 2 1 5 5 C 1.55144 * 103.01861 * 337.71644 * 4 3 2 6 6 C 1.47842 * 111.00238 * 239.15389 * 2 1 3 7 7 H 1.08998 * 110.37031 * 27.53480 * 6 2 1 8 8 C 1.50696 * 110.37213 * 265.30477 * 6 2 1 9 9 O 1.21279 * 120.00387 * 341.44861 * 8 6 2 10 10 N 1.34783 * 119.99990 * 161.45378 * 8 6 2 11 11 C 1.46502 * 120.00047 * 179.97438 * 10 8 6 12 12 H 1.08998 * 110.64043 * 36.68996 * 11 10 8 13 13 C 1.54328 * 110.72019 * 273.54569 * 11 10 8 14 14 N 1.47013 * 107.26913 * 219.44462 * 13 11 10 15 15 C 1.36938 * 125.64659 * 178.90892 * 14 13 11 16 16 H 1.07998 * 120.00361 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00215 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99693 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47225 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47254 * 119.99910 * 19 17 15 22 22 H 1.48504 * 109.46745 * 239.99482 * 19 17 15 23 23 C 1.47417 * 108.70703 * 358.94353 * 14 13 11 24 24 C 1.54912 * 104.83235 * 24.12742 * 23 14 13 25 25 H 1.09000 * 111.00625 * 204.91587 * 24 23 14 26 26 O 1.42905 * 111.00411 * 81.06684 * 24 23 14 27 27 H 1.09000 * 109.46730 * 60.13120 * 1 2 3 28 28 H 1.09006 * 109.46640 * 180.12497 * 1 2 3 29 29 H 1.08990 * 109.47139 * 300.12605 * 1 2 3 30 30 H 1.09000 * 109.89463 * 117.33566 * 3 2 1 31 31 H 1.09001 * 110.02673 * 356.21799 * 3 2 1 32 32 H 1.08999 * 110.70846 * 96.09223 * 4 3 2 33 33 H 1.09000 * 110.71111 * 219.33808 * 4 3 2 34 34 H 1.09002 * 110.99593 * 153.74641 * 5 4 3 35 35 H 1.09000 * 110.99290 * 277.56635 * 5 4 3 36 36 H 0.96999 * 119.99736 * 0.02562 * 10 8 6 37 37 H 1.09001 * 109.88408 * 338.86640 * 13 11 10 38 38 H 1.08997 * 109.87662 * 99.87053 * 13 11 10 39 39 H 0.97001 * 120.00140 * 180.02562 * 18 17 15 40 40 H 1.08997 * 110.37068 * 142.96684 * 23 14 13 41 41 H 1.09007 * 110.37250 * 265.17855 * 23 14 13 42 42 H 0.96698 * 113.99600 * 67.80117 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3048 0.0444 -1.5437 6 6 1.9989 -0.7077 -1.1850 7 1 1.2890 -0.6502 -2.0101 8 6 2.2949 -2.1463 -0.8479 9 8 2.4169 -2.4852 0.3101 10 7 2.4242 -3.0565 -1.8336 11 6 2.7125 -4.4551 -1.5060 12 1 2.1929 -4.7512 -0.5947 13 6 4.2327 -4.6808 -1.3657 14 7 4.5383 -5.9841 -1.9734 15 6 5.7831 -6.5460 -2.0731 16 1 6.6446 -6.0222 -1.6859 17 6 5.9380 -7.7883 -2.6728 18 7 4.8882 -8.4264 -3.1452 19 14 7.6360 -8.5550 -2.8082 20 1 8.6405 -7.6428 -2.2047 21 1 7.6512 -9.8541 -2.0891 22 1 7.9660 -8.7772 -4.2389 23 6 3.2829 -6.5857 -2.4584 24 6 2.3306 -5.3855 -2.6874 25 1 1.2878 -5.6955 -2.6193 26 8 2.5943 -4.7546 -3.9423 27 1 -0.3633 0.5118 -0.8912 28 1 -0.3633 -1.0277 0.0022 29 1 -0.3633 0.5157 0.8888 30 1 2.5697 1.5541 0.9105 31 1 1.1771 2.0911 -0.0676 32 1 2.3744 1.9545 -2.0695 33 1 3.8001 2.1034 -0.9905 34 1 3.5497 -0.0797 -2.5986 35 1 4.1302 -0.2833 -0.9117 36 1 2.3271 -2.7854 -2.7598 37 1 4.7744 -3.8921 -1.8879 38 1 4.5109 -4.6861 -0.3118 39 1 4.9962 -9.2946 -3.5639 40 1 3.4539 -7.1181 -3.3939 41 1 2.8711 -7.2610 -1.7083 42 1 2.3714 -5.2983 -4.7102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083368060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:41 Heat of formation + Delta-G solvation = -68.190961 kcal Electronic energy + Delta-G solvation = -23274.919982 eV Core-core repulsion = 19868.869879 eV Total energy + Delta-G solvation = -3406.050103 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.31599 -39.91759 -38.62624 -36.37188 -35.39018 -33.63749 -33.00016 -31.00244 -29.95276 -28.55948 -26.66439 -26.35892 -23.62326 -22.38023 -22.04955 -21.43723 -20.84831 -19.22874 -18.41697 -18.14105 -17.18753 -16.84881 -16.48106 -16.19399 -16.00188 -15.68996 -15.14663 -14.79722 -14.68576 -14.45104 -14.33170 -14.18960 -13.61253 -13.51498 -13.23487 -13.10850 -12.89040 -12.76684 -12.49996 -12.31643 -12.22295 -12.09243 -12.06789 -11.90641 -11.83682 -11.65669 -10.93543 -10.76012 -10.70589 -10.05709 -9.25953 -8.91068 -7.81446 -5.24854 1.46188 1.46980 1.57470 1.65682 2.02208 2.48359 3.07361 3.22347 3.29655 3.53769 3.65751 3.70469 3.84970 3.95519 3.99118 4.07742 4.20299 4.30748 4.44420 4.47222 4.49212 4.55844 4.72988 4.77922 4.85453 4.89255 4.95289 4.98383 5.00674 5.06870 5.29928 5.33621 5.45561 5.52175 5.70647 5.87761 6.10111 6.24982 6.68763 6.91825 7.08205 7.35807 7.72317 8.35361 9.20796 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030180 B = 0.003849 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.551257 B = 7273.791772 C = 7618.094863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.042 3.958 4 C -0.129 4.129 5 C -0.119 4.119 6 C 0.062 3.938 7 H 0.102 0.898 8 C 0.513 3.487 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.156 3.844 12 H 0.090 0.910 13 C 0.133 3.867 14 N -0.616 5.616 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.059 4.059 18 N -0.945 5.945 19 Si 0.981 3.019 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.126 3.874 24 C 0.093 3.907 25 H 0.094 0.906 26 O -0.561 6.561 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.417 0.583 37 H 0.022 0.978 38 H 0.005 0.995 39 H 0.250 0.750 40 H 0.092 0.908 41 H -0.001 1.001 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 19.076 -2.006 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.085 4.085 4 C -0.168 4.168 5 C -0.157 4.157 6 C -0.050 4.050 7 H 0.119 0.881 8 C 0.300 3.700 9 O -0.447 6.447 10 N -0.352 5.352 11 C 0.049 3.951 12 H 0.108 0.892 13 C 0.007 3.993 14 N -0.342 5.342 15 C -0.371 4.371 16 H 0.090 0.910 17 C -0.252 4.252 18 N -0.594 5.594 19 Si 0.809 3.191 20 H -0.198 1.198 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.001 3.999 24 C 0.032 3.968 25 H 0.112 0.888 26 O -0.369 6.369 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.254 0.746 37 H 0.040 0.960 38 H 0.023 0.977 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.017 0.983 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.094 18.909 -0.395 21.438 hybrid contribution 0.553 -1.022 -1.045 1.563 sum -9.541 17.887 -1.440 20.323 Atomic orbital electron populations 1.22550 0.86094 1.01760 1.01977 1.62944 1.09248 1.15265 1.39586 1.22896 0.98818 0.87714 0.99059 1.22782 1.00604 0.95201 0.98172 1.22694 0.94619 0.95545 1.02875 1.22493 0.99394 0.89808 0.93325 0.88086 1.21166 0.75694 0.88257 0.84905 1.90667 1.51057 1.81380 1.21588 1.45717 1.71747 1.07157 1.10600 1.21741 0.94374 0.81657 0.97317 0.89213 1.21615 0.94906 0.88221 0.94599 1.44559 1.03906 1.17468 1.68273 1.19431 0.84852 1.00662 1.32185 0.90994 1.25548 1.01334 0.97427 1.00875 1.69949 1.28613 1.15326 1.45529 0.84975 0.79063 0.77800 0.77240 1.19775 1.21733 1.21207 1.22512 0.84480 0.92781 1.00175 1.23229 0.97905 0.91925 0.83703 0.88816 1.86203 1.89707 1.45781 1.15252 0.93266 0.92988 0.90240 0.91214 0.90294 0.88966 0.89180 0.88114 0.92504 0.74569 0.95971 0.97704 0.94039 0.88997 0.98303 0.75373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.12 127.69 1.16 1.61 16 2 N -0.55 -12.62 4.69 -891.02 -4.18 -16.80 16 3 C 0.04 0.70 6.89 86.65 0.60 1.30 16 4 C -0.13 -1.77 6.94 31.78 0.22 -1.55 16 5 C -0.12 -2.31 6.49 31.98 0.21 -2.11 16 6 C 0.06 1.40 2.83 44.64 0.13 1.52 16 7 H 0.10 1.74 7.78 -2.39 -0.02 1.72 16 8 C 0.51 16.44 7.12 87.65 0.62 17.07 16 9 O -0.57 -23.80 16.32 -3.03 -0.05 -23.85 16 10 N -0.70 -21.53 5.09 -436.91 -2.22 -23.75 16 11 C 0.16 5.89 3.12 46.18 0.14 6.04 16 12 H 0.09 3.58 7.69 -2.39 -0.02 3.56 16 13 C 0.13 6.26 6.99 86.73 0.61 6.87 16 14 N -0.62 -33.01 3.39 -692.01 -2.35 -35.36 16 15 C -0.24 -14.11 10.27 84.03 0.86 -13.25 16 16 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 17 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 18 N -0.94 -54.93 10.09 21.65 0.22 -54.71 16 19 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 23 C 0.13 6.04 5.62 86.86 0.49 6.53 16 24 C 0.09 3.29 4.28 31.99 0.14 3.43 16 25 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 26 O -0.56 -17.72 12.23 -148.98 -1.82 -19.54 16 27 H 0.05 0.66 8.10 -2.39 -0.02 0.64 16 28 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 0.96 7.59 -2.39 -0.02 0.95 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 36 H 0.42 10.87 7.57 -92.71 -0.70 10.16 16 37 H 0.02 1.06 8.03 -2.39 -0.02 1.04 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 40 H 0.09 4.84 5.87 -2.39 -0.01 4.83 16 41 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 42 H 0.40 9.74 9.12 -74.06 -0.68 9.06 16 Total: -1.00 -74.53 337.08 -3.08 -77.61 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.35 Total: 23.76 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 5.65 Total: 24.57 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -8.53 Total: -130.62 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.87 Total: -43.39 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -74.53 -3.08 -77.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083368060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.420 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds