Wall clock time and date at job start Tue Mar 31 2020 02:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47478 * 2 1 4 4 C 1.34778 * 120.00236 * 180.02562 * 3 2 1 5 5 O 1.21275 * 119.99901 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00255 * 179.97438 * 4 3 2 7 7 C 1.50697 * 109.47464 * 179.97438 * 6 4 3 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 4 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47017 * 89.99868 * 19 17 15 21 21 H 1.48492 * 109.47131 * 210.00443 * 19 17 15 22 22 H 1.48501 * 109.46802 * 330.00196 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 1.08991 * 109.47264 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46723 * 299.99920 * 1 2 3 26 26 H 1.09006 * 109.47243 * 59.99723 * 1 2 3 27 27 H 1.08997 * 109.47139 * 239.99772 * 2 1 3 28 28 H 1.09006 * 109.47243 * 120.00277 * 2 1 3 29 29 H 0.97000 * 119.99527 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.47399 * 59.99594 * 6 4 3 31 31 H 1.09006 * 109.47109 * 300.00300 * 6 4 3 32 32 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 33 33 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 34 34 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 35 35 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 36 36 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 37 37 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 38 38 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 39 39 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 40 40 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 41 41 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 42 42 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8459 3.0481 -0.0011 7 6 5.3528 3.0481 -0.0010 8 8 5.9592 1.9978 -0.0009 9 7 6.0267 4.2153 -0.0020 10 6 7.4917 4.2153 -0.0024 11 6 8.0018 5.6578 -0.0029 12 6 9.5306 5.7706 0.1194 13 6 9.4503 6.9085 -0.9119 14 7 10.5347 6.8855 -1.8966 15 6 10.8893 8.0347 -2.5516 16 1 10.3698 8.9580 -2.3419 17 6 11.9172 8.0131 -3.4843 18 7 12.5507 6.8879 -3.7395 19 14 12.4014 9.5808 -4.3772 20 1 13.4533 10.2869 -3.6025 21 1 12.9230 9.2416 -5.7254 22 1 11.2125 10.4602 -4.5132 23 6 8.1491 6.2599 -1.4131 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.3880 2.1184 -0.0004 30 1 3.4828 3.5624 0.8888 31 1 3.4822 3.5618 -0.8911 32 1 5.5418 5.0554 -0.0024 33 1 7.8548 3.7009 -0.8922 34 1 7.8554 3.7019 0.8878 35 1 7.4597 6.2986 0.6925 36 1 10.0636 4.8910 -0.2415 37 1 9.8670 6.0964 1.1037 38 1 9.3042 7.8924 -0.4661 39 1 11.0015 6.0563 -2.0848 40 1 13.2686 6.8727 -4.3915 41 1 7.3711 6.9803 -1.6653 42 1 8.3052 5.5138 -2.1923 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100263882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:10 Heat of formation + Delta-G solvation = -77.859958 kcal Electronic energy + Delta-G solvation = -21365.413598 eV Core-core repulsion = 17958.944216 eV Total energy + Delta-G solvation = -3406.469382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.32725 -40.23979 -39.39120 -36.28109 -35.90537 -34.94429 -32.70866 -32.06553 -30.57160 -28.24708 -26.43910 -25.78796 -23.99478 -22.56178 -22.05044 -21.25370 -20.39384 -19.04083 -18.31434 -17.93224 -17.08553 -16.83804 -16.74850 -16.40445 -16.18089 -15.91678 -15.39368 -15.15934 -14.91129 -14.47045 -14.34887 -14.26224 -13.41866 -13.24835 -13.22344 -13.07636 -12.90204 -12.85488 -12.66760 -12.61695 -12.32205 -12.17312 -12.06069 -11.57093 -11.53581 -11.17410 -11.01583 -10.80959 -10.45427 -10.05448 -9.99572 -8.96626 -7.93511 -5.22088 1.47699 1.49807 1.58113 1.65779 1.77455 1.91675 2.56429 2.59277 3.38354 3.57445 3.73804 3.78675 3.91904 4.07223 4.21234 4.22288 4.27941 4.37212 4.43269 4.45097 4.48335 4.53702 4.59399 4.81381 4.97901 4.99583 5.01351 5.07561 5.08566 5.25242 5.28419 5.39833 5.48363 5.52029 5.55946 5.77025 6.28615 6.60731 6.68527 7.32559 7.33739 7.45942 8.12740 8.34152 9.30127 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.039677 B = 0.002250 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.528177 B =12443.808584 C =12588.621133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.109 3.891 3 N -0.718 5.718 4 C 0.500 3.500 5 O -0.563 6.563 6 C -0.150 4.150 7 C 0.498 3.502 8 O -0.566 6.566 9 N -0.712 5.712 10 C 0.139 3.861 11 C -0.091 4.091 12 C -0.140 4.140 13 C 0.142 3.858 14 N -0.732 5.732 15 C -0.241 4.241 16 H 0.081 0.919 17 C -0.083 4.083 18 N -0.974 5.974 19 Si 0.975 3.025 20 H -0.287 1.287 21 H -0.299 1.299 22 H -0.266 1.266 23 C -0.152 4.152 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.420 0.580 30 H 0.168 0.832 31 H 0.162 0.838 32 H 0.419 0.581 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.128 0.872 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.370 0.630 40 H 0.249 0.751 41 H 0.073 0.927 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.312 -4.706 11.472 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.374 5.374 4 C 0.286 3.714 5 O -0.440 6.440 6 C -0.192 4.192 7 C 0.284 3.716 8 O -0.443 6.443 9 N -0.366 5.366 10 C 0.014 3.986 11 C -0.110 4.110 12 C -0.179 4.179 13 C 0.033 3.967 14 N -0.369 5.369 15 C -0.373 4.373 16 H 0.099 0.901 17 C -0.275 4.275 18 N -0.625 5.625 19 Si 0.804 3.196 20 H -0.214 1.214 21 H -0.226 1.226 22 H -0.191 1.191 23 C -0.193 4.193 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.257 0.743 30 H 0.185 0.815 31 H 0.179 0.821 32 H 0.257 0.743 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.202 0.798 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -28.312 -5.931 11.415 31.097 hybrid contribution 0.718 0.640 -0.925 1.335 sum -27.594 -5.291 10.489 29.991 Atomic orbital electron populations 1.21935 0.91455 1.04071 1.03574 1.21315 0.96403 0.82854 1.00874 1.45911 1.06209 1.09683 1.75551 1.20723 0.82808 0.91686 0.76189 1.90869 1.56344 1.47711 1.49044 1.21640 0.91434 0.95541 1.10612 1.20843 0.91033 0.83446 0.76244 1.90862 1.71097 1.32960 1.49370 1.45824 1.06785 1.08844 1.75146 1.21143 0.80113 0.96784 1.00534 1.22509 0.95841 0.94517 0.98142 1.23330 0.95660 0.98977 0.99967 1.21988 0.87904 0.96987 0.89827 1.42665 1.39550 1.08636 1.46060 1.19757 1.12451 0.89860 1.15201 0.90070 1.25637 0.99767 1.00131 1.01925 1.69837 1.26917 1.27122 1.38596 0.85110 0.78211 0.79097 0.77177 1.21450 1.22618 1.19052 1.23751 0.99812 0.99898 0.95789 0.90253 0.90697 0.90882 0.93450 0.93186 0.74253 0.81493 0.82073 0.74299 0.94353 0.92340 0.85450 0.91975 0.90258 0.89894 0.79810 0.94186 0.90864 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.03 71.98 0.72 -0.04 16 2 C 0.11 1.42 6.39 86.38 0.55 1.98 16 3 N -0.72 -8.28 5.56 -463.08 -2.57 -10.85 16 4 C 0.50 10.17 7.82 87.66 0.69 10.86 16 5 O -0.56 -19.60 14.18 20.43 0.29 -19.31 16 6 C -0.15 -1.75 6.18 29.10 0.18 -1.57 16 7 C 0.50 11.96 7.82 87.66 0.69 12.65 16 8 O -0.57 -21.60 14.18 20.40 0.29 -21.31 16 9 N -0.71 -13.60 5.56 -463.06 -2.57 -16.17 16 10 C 0.14 3.56 5.51 86.38 0.48 4.04 16 11 C -0.09 -2.16 3.76 -10.18 -0.04 -2.20 16 12 C -0.14 -4.31 7.39 31.12 0.23 -4.08 16 13 C 0.14 5.32 4.47 45.52 0.20 5.52 16 14 N -0.73 -37.10 5.41 -320.44 -1.73 -38.84 16 15 C -0.24 -13.34 9.97 84.03 0.84 -12.50 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 17 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 18 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 19 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C -0.15 -4.71 7.45 31.21 0.23 -4.48 16 24 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.07 0.24 8.14 -2.38 -0.02 0.22 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.42 1.13 8.47 -92.71 -0.79 0.35 16 30 H 0.17 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.16 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.42 4.39 8.47 -92.71 -0.79 3.60 16 33 H 0.04 1.24 7.85 -2.39 -0.02 1.22 16 34 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 39 H 0.37 20.61 7.91 -92.71 -0.73 19.88 16 40 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 Total: -1.00 -88.69 353.59 -0.02 -88.71 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -1.27 Total: 24.27 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.23 Total: 5.84 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.60 Total: -126.50 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: 0.58 Total: -40.63 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -88.69 -0.02 -88.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100263882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.852 kcal (2) G-P(sol) polarization free energy of solvation -88.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds