Wall clock time and date at job start Tue Mar 31 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 120.00400 * 2 1 4 4 N 1.34775 * 119.99593 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99803 * 185.08653 * 4 2 1 6 6 C 1.53006 * 109.47151 * 181.33999 * 5 4 2 7 7 C 1.50703 * 109.47252 * 301.34054 * 5 4 2 8 8 O 1.21280 * 119.99636 * 144.99876 * 7 5 4 9 9 N 1.34774 * 119.99854 * 325.00323 * 7 5 4 10 10 C 1.46500 * 119.99678 * 179.97438 * 9 7 5 11 11 C 1.53007 * 109.46794 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46794 * 179.97438 * 11 10 9 13 13 C 1.36934 * 119.99541 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00362 * 359.97438 * 13 12 11 15 15 C 1.38821 * 120.00034 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99410 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00151 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47041 * 59.99726 * 17 15 13 19 19 H 1.48500 * 109.47013 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47156 * 299.99472 * 17 15 13 21 21 C 1.53002 * 109.47462 * 61.34266 * 5 4 2 22 22 C 1.52999 * 117.49886 * 65.23102 * 21 5 4 23 23 C 1.52996 * 117.50300 * 133.85449 * 21 5 4 24 24 H 1.09000 * 109.47098 * 240.00359 * 1 2 3 25 25 H 1.09007 * 109.46762 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47402 * 119.99389 * 1 2 3 27 27 H 0.97001 * 120.00673 * 5.07951 * 4 2 1 28 28 H 1.08994 * 109.47187 * 299.99866 * 6 5 4 29 29 H 1.08994 * 109.46915 * 60.00320 * 6 5 4 30 30 H 1.09006 * 109.46868 * 179.97438 * 6 5 4 31 31 H 0.96996 * 120.00040 * 359.97438 * 9 7 5 32 32 H 1.08995 * 109.47087 * 299.99698 * 10 9 7 33 33 H 1.08999 * 109.47418 * 59.99921 * 10 9 7 34 34 H 1.08999 * 109.46608 * 299.99927 * 11 10 9 35 35 H 1.08999 * 109.47214 * 59.99782 * 11 10 9 36 36 H 0.96996 * 120.00282 * 359.97438 * 12 11 10 37 37 H 0.97004 * 119.99200 * 180.02562 * 16 15 13 38 38 H 1.08997 * 115.56104 * 279.54782 * 21 5 4 39 39 H 1.09001 * 117.50098 * 0.02562 * 22 21 5 40 40 H 1.09004 * 117.50215 * 214.98019 * 22 21 5 41 41 H 1.09002 * 117.50156 * 145.02268 * 23 21 5 42 42 H 1.09001 * 117.49704 * 0.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1807 -1.1672 -0.0005 5 6 3.6414 -1.1698 0.1120 6 6 4.1549 -2.6099 0.0530 7 6 4.2343 -0.3781 -1.0251 8 8 5.2381 0.2790 -0.8478 9 7 3.6489 -0.4003 -2.2388 10 6 4.2249 0.3698 -3.3440 11 6 3.3741 0.1732 -4.6004 12 7 3.9497 0.9437 -5.7054 13 6 3.3549 0.9212 -6.9386 14 1 2.4616 0.3352 -7.0967 15 6 3.9006 1.6510 -7.9859 16 7 4.9895 2.3648 -7.7933 17 14 3.0895 1.6198 -9.6684 18 1 1.7009 2.1341 -9.5580 19 1 3.8608 2.4753 -10.6056 20 1 3.0620 0.2255 -10.1788 21 6 4.0517 -0.5363 1.4429 22 6 3.6501 -1.2662 2.7262 23 6 5.1117 -1.2621 2.2738 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 1.6986 -2.0056 -0.0753 28 1 3.7262 -3.1825 0.8753 29 1 3.8628 -3.0612 -0.8952 30 1 5.2418 -2.6118 0.1362 31 1 2.8462 -0.9261 -2.3806 32 1 4.2428 1.4270 -3.0796 33 1 5.2413 0.0259 -3.5356 34 1 3.3558 -0.8841 -4.8649 35 1 2.3578 0.5173 -4.4086 36 1 4.7522 1.4698 -5.5636 37 1 5.3706 2.8750 -8.5251 38 1 4.0550 0.5534 1.4638 39 1 3.0940 -2.1979 2.6224 40 1 3.3894 -0.6566 3.5914 41 1 5.8125 -0.6498 2.8414 42 1 5.5171 -2.1907 1.8721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147466914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:10 Heat of formation + Delta-G solvation = -32.746233 kcal Electronic energy + Delta-G solvation = -22922.158061 eV Core-core repulsion = 19517.644957 eV Total energy + Delta-G solvation = -3404.513104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.00595 -38.78051 -37.67223 -35.56706 -34.68404 -33.61591 -31.51049 -30.96761 -29.16236 -27.71053 -25.46538 -23.61884 -22.62512 -21.60415 -21.21876 -21.07060 -19.17051 -17.64448 -17.21348 -17.10874 -16.71775 -15.58573 -15.32341 -15.02242 -14.57852 -14.53898 -14.36329 -13.87720 -13.49953 -13.25283 -13.12827 -12.99287 -12.80650 -12.62690 -12.46354 -12.36066 -11.61533 -11.49311 -11.33063 -11.07123 -10.79396 -10.77874 -10.64089 -10.52950 -10.15911 -10.06998 -9.89583 -9.75040 -9.10755 -8.93291 -8.71985 -6.96741 -5.76831 -3.07539 2.46279 2.58303 2.98891 3.30708 3.43975 3.48048 3.49744 3.75521 4.36356 4.42344 4.58771 4.64685 4.69914 4.81852 4.88939 5.01367 5.05347 5.13497 5.26699 5.42817 5.45871 5.52985 5.55585 5.59010 5.66291 5.77974 5.84607 5.90224 6.01675 6.08890 6.13725 6.20844 6.56660 6.75325 6.81765 7.22051 7.66837 7.71568 8.04157 8.40174 8.43802 9.51677 10.07081 10.42174 11.45738 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.003470 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.981002 B = 8067.511965 C = 8582.471107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.520 6.520 4 N -0.729 5.729 5 C 0.191 3.809 6 C -0.158 4.158 7 C 0.523 3.477 8 O -0.530 6.530 9 N -0.716 5.716 10 C 0.113 3.887 11 C 0.147 3.853 12 N -0.729 5.729 13 C -0.245 4.245 14 H 0.071 0.929 15 C -0.012 4.012 16 N -0.931 5.931 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C -0.139 4.139 22 C -0.173 4.173 23 C -0.171 4.171 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.403 0.597 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.394 0.606 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -13.585 21.903 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.394 6.394 4 N -0.385 5.385 5 C 0.102 3.898 6 C -0.216 4.216 7 C 0.306 3.694 8 O -0.405 6.405 9 N -0.367 5.367 10 C -0.011 4.011 11 C 0.019 3.981 12 N -0.374 5.374 13 C -0.376 4.376 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.741 3.259 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.158 4.158 22 C -0.210 4.210 23 C -0.208 4.208 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.238 0.762 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.972 -12.321 21.869 26.051 hybrid contribution -0.861 -0.425 -1.052 1.424 sum -7.833 -12.746 20.817 25.635 Atomic orbital electron populations 1.21920 0.91343 1.05818 1.04194 1.20902 0.90689 0.83497 0.75393 1.90811 1.70417 1.31101 1.47065 1.46251 1.06048 1.09408 1.76792 1.19938 0.80390 0.96305 0.93172 1.22173 1.03432 0.92535 1.03419 1.20286 0.84313 0.81525 0.83257 1.90704 1.25413 1.41469 1.82873 1.45771 1.30387 1.50208 1.10314 1.21552 0.97738 0.96224 0.85588 1.20727 0.95044 0.95450 0.86896 1.42181 1.32453 1.56379 1.06368 1.19145 1.07382 1.24195 0.86845 0.91139 1.24784 0.97850 0.99840 0.98352 1.69666 1.22153 1.34063 1.31962 0.86219 0.78449 0.77321 0.83875 1.21200 1.21605 1.21212 1.22233 1.04250 1.00122 0.89242 1.22918 0.98241 1.02193 0.97679 1.23111 0.91953 1.02642 1.03104 0.89448 0.88842 0.89209 0.76197 0.90500 0.90975 0.89525 0.77252 0.91335 0.91398 0.96007 0.96011 0.77984 0.93311 0.86471 0.88882 0.88867 0.88584 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.32 36.00 0.37 -0.77 16 2 C 0.51 5.46 7.14 -10.99 -0.08 5.38 16 3 O -0.52 -8.53 14.91 5.56 0.08 -8.45 16 4 N -0.73 -5.92 4.33 -48.68 -0.21 -6.13 16 5 C 0.19 2.06 0.82 -132.97 -0.11 1.95 16 6 C -0.16 -1.18 7.23 37.16 0.27 -0.91 16 7 C 0.52 8.29 5.13 -10.99 -0.06 8.24 16 8 O -0.53 -10.72 16.24 5.56 0.09 -10.63 16 9 N -0.72 -10.98 5.25 -60.29 -0.32 -11.30 16 10 C 0.11 2.13 5.79 -4.04 -0.02 2.11 16 11 C 0.15 3.04 6.37 -4.04 -0.03 3.02 16 12 N -0.73 -19.21 5.60 -59.90 -0.34 -19.55 16 13 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 14 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 17 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 C -0.14 -1.61 3.82 -90.62 -0.35 -1.96 16 22 C -0.17 -1.41 9.83 -26.73 -0.26 -1.68 16 23 C -0.17 -1.59 9.66 -26.73 -0.26 -1.84 16 24 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.40 1.71 8.48 -40.82 -0.35 1.36 16 28 H 0.08 0.38 6.95 -51.93 -0.36 0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.72 6.73 -51.93 -0.35 0.37 16 31 H 0.39 4.92 7.81 -40.82 -0.32 4.60 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.39 10.82 7.67 -40.82 -0.31 10.50 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.12 1.81 7.48 -51.93 -0.39 1.42 16 39 H 0.09 0.59 7.27 -51.93 -0.38 0.21 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 0.80 5.89 -51.93 -0.31 0.49 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -37.31 347.69 -7.05 -44.36 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.53 Total: 11.02 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -0.77 Total: 5.97 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.14 Total: -65.05 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.17 Total: -19.09 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.31 -7.05 -44.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147466914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.610 kcal (2) G-P(sol) polarization free energy of solvation -37.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds