Wall clock time and date at job start Tue Mar 31 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 120.00400 * 2 1 4 4 N 1.34775 * 119.99593 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99803 * 185.08653 * 4 2 1 6 6 C 1.53006 * 109.47151 * 181.33999 * 5 4 2 7 7 C 1.50703 * 109.47252 * 301.34054 * 5 4 2 8 8 O 1.21280 * 119.99636 * 144.99876 * 7 5 4 9 9 N 1.34774 * 119.99854 * 325.00323 * 7 5 4 10 10 C 1.46500 * 119.99678 * 179.97438 * 9 7 5 11 11 C 1.53007 * 109.46794 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46794 * 179.97438 * 11 10 9 13 13 C 1.36934 * 119.99541 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00362 * 359.97438 * 13 12 11 15 15 C 1.38821 * 120.00034 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99410 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00151 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47041 * 59.99726 * 17 15 13 19 19 H 1.48500 * 109.47013 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47156 * 299.99472 * 17 15 13 21 21 C 1.53002 * 109.47462 * 61.34266 * 5 4 2 22 22 C 1.52999 * 117.49886 * 65.23102 * 21 5 4 23 23 C 1.52996 * 117.50300 * 133.85449 * 21 5 4 24 24 H 1.09000 * 109.47098 * 240.00359 * 1 2 3 25 25 H 1.09007 * 109.46762 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47402 * 119.99389 * 1 2 3 27 27 H 0.97001 * 120.00673 * 5.07951 * 4 2 1 28 28 H 1.08994 * 109.47187 * 299.99866 * 6 5 4 29 29 H 1.08994 * 109.46915 * 60.00320 * 6 5 4 30 30 H 1.09006 * 109.46868 * 179.97438 * 6 5 4 31 31 H 0.96996 * 120.00040 * 359.97438 * 9 7 5 32 32 H 1.08995 * 109.47087 * 299.99698 * 10 9 7 33 33 H 1.08999 * 109.47418 * 59.99921 * 10 9 7 34 34 H 1.08999 * 109.46608 * 299.99927 * 11 10 9 35 35 H 1.08999 * 109.47214 * 59.99782 * 11 10 9 36 36 H 0.96996 * 120.00282 * 359.97438 * 12 11 10 37 37 H 0.97004 * 119.99200 * 180.02562 * 16 15 13 38 38 H 1.08997 * 115.56104 * 279.54782 * 21 5 4 39 39 H 1.09001 * 117.50098 * 0.02562 * 22 21 5 40 40 H 1.09004 * 117.50215 * 214.98019 * 22 21 5 41 41 H 1.09002 * 117.50156 * 145.02268 * 23 21 5 42 42 H 1.09001 * 117.49704 * 0.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1807 -1.1672 -0.0005 5 6 3.6414 -1.1698 0.1120 6 6 4.1549 -2.6099 0.0530 7 6 4.2343 -0.3781 -1.0251 8 8 5.2381 0.2790 -0.8478 9 7 3.6489 -0.4003 -2.2388 10 6 4.2249 0.3698 -3.3440 11 6 3.3741 0.1732 -4.6004 12 7 3.9497 0.9437 -5.7054 13 6 3.3549 0.9212 -6.9386 14 1 2.4616 0.3352 -7.0967 15 6 3.9006 1.6510 -7.9859 16 7 4.9895 2.3648 -7.7933 17 14 3.0895 1.6198 -9.6684 18 1 1.7009 2.1341 -9.5580 19 1 3.8608 2.4753 -10.6056 20 1 3.0620 0.2255 -10.1788 21 6 4.0517 -0.5363 1.4429 22 6 3.6501 -1.2662 2.7262 23 6 5.1117 -1.2621 2.2738 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5137 -0.8900 27 1 1.6986 -2.0056 -0.0753 28 1 3.7262 -3.1825 0.8753 29 1 3.8628 -3.0612 -0.8952 30 1 5.2418 -2.6118 0.1362 31 1 2.8462 -0.9261 -2.3806 32 1 4.2428 1.4270 -3.0796 33 1 5.2413 0.0259 -3.5356 34 1 3.3558 -0.8841 -4.8649 35 1 2.3578 0.5173 -4.4086 36 1 4.7522 1.4698 -5.5636 37 1 5.3706 2.8750 -8.5251 38 1 4.0550 0.5534 1.4638 39 1 3.0940 -2.1979 2.6224 40 1 3.3894 -0.6566 3.5914 41 1 5.8125 -0.6498 2.8414 42 1 5.5171 -2.1907 1.8721 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147466914.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:09 Heat of formation + Delta-G solvation = -63.150608 kcal Electronic energy + Delta-G solvation = -22923.476494 eV Core-core repulsion = 19517.644957 eV Total energy + Delta-G solvation = -3405.831536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.99566 -39.91283 -38.62331 -37.29405 -35.79682 -35.16672 -33.15071 -32.10228 -29.76527 -29.44292 -26.45819 -25.47050 -23.37323 -23.24228 -22.35754 -22.00256 -20.22688 -19.34480 -18.59634 -17.96538 -17.62984 -16.92016 -16.64195 -16.45833 -16.00313 -15.81255 -15.44498 -15.14436 -14.96035 -14.81539 -14.50638 -14.15975 -13.65491 -13.21579 -13.13174 -13.07160 -13.04295 -12.98408 -12.65246 -12.60008 -12.43447 -12.15236 -12.11658 -11.88884 -11.48636 -11.39327 -11.10919 -11.00381 -10.77511 -10.20030 -10.11454 -9.10856 -7.98406 -5.31144 1.46764 1.49120 1.51632 1.57739 1.63856 1.98304 2.22293 2.56397 2.97988 3.35278 3.52187 3.58885 3.79785 3.94648 3.98372 4.03236 4.10945 4.13444 4.21379 4.40303 4.48337 4.54369 4.64878 4.72279 4.77812 4.84227 4.94794 4.95103 5.05471 5.10872 5.12722 5.24683 5.27059 5.32523 5.36575 5.45719 6.21080 6.45232 6.60604 7.18631 7.27054 7.31819 7.97377 8.21909 9.25271 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.003470 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.981002 B = 8067.511965 C = 8582.471107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.501 3.499 3 O -0.587 6.587 4 N -0.707 5.707 5 C 0.202 3.798 6 C -0.155 4.155 7 C 0.513 3.487 8 O -0.584 6.584 9 N -0.705 5.705 10 C 0.130 3.870 11 C 0.155 3.845 12 N -0.747 5.747 13 C -0.252 4.252 14 H 0.085 0.915 15 C -0.078 4.078 16 N -0.972 5.972 17 Si 0.984 3.016 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.272 1.272 21 C -0.170 4.170 22 C -0.141 4.141 23 C -0.172 4.172 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.428 0.572 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.411 0.589 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.372 0.628 37 H 0.253 0.747 38 H 0.064 0.936 39 H 0.127 0.873 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 -17.136 22.560 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.290 3.710 3 O -0.466 6.466 4 N -0.365 5.365 5 C 0.112 3.888 6 C -0.212 4.212 7 C 0.299 3.701 8 O -0.462 6.462 9 N -0.357 5.357 10 C 0.005 3.995 11 C 0.028 3.972 12 N -0.391 5.391 13 C -0.383 4.383 14 H 0.103 0.897 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.811 3.189 18 H -0.201 1.201 19 H -0.223 1.223 20 H -0.198 1.198 21 C -0.190 4.190 22 C -0.178 4.178 23 C -0.209 4.209 24 H 0.139 0.861 25 H 0.096 0.904 26 H 0.133 0.867 27 H 0.268 0.732 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.247 0.753 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.204 0.796 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.145 0.855 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.700 -15.983 22.557 29.298 hybrid contribution -0.043 0.694 -1.159 1.351 sum -9.742 -15.289 21.398 28.046 Atomic orbital electron populations 1.21939 0.87731 1.05760 1.06957 1.21762 0.92427 0.82977 0.73819 1.90808 1.71965 1.33636 1.50211 1.46076 1.04940 1.10048 1.75397 1.19779 0.81562 0.97336 0.90120 1.22246 1.03039 0.89995 1.05911 1.21418 0.83565 0.80955 0.84116 1.90670 1.28018 1.43815 1.83708 1.45601 1.30838 1.49774 1.09502 1.21098 0.97233 0.94915 0.86292 1.20788 0.95003 0.95622 0.85798 1.42432 1.32223 1.56980 1.07422 1.19641 1.07514 1.23575 0.87616 0.89716 1.25743 0.98689 0.99958 1.02584 1.69854 1.24036 1.35421 1.32918 0.85071 0.77499 0.77674 0.78632 1.20071 1.22298 1.19756 1.22037 1.07863 0.97752 0.91377 1.23038 0.97235 1.02395 0.95101 1.23241 0.92584 1.02790 1.02321 0.86099 0.90422 0.86713 0.73238 0.86695 0.89459 0.90453 0.75263 0.94584 0.92629 0.93839 0.95162 0.79630 0.93856 0.91722 0.85539 0.88804 0.89518 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 10.32 71.23 0.74 -0.98 16 2 C 0.50 10.18 7.14 87.66 0.63 10.81 16 3 O -0.59 -20.15 14.91 -3.03 -0.05 -20.20 16 4 N -0.71 -9.63 4.33 -426.32 -1.85 -11.47 16 5 C 0.20 4.09 0.82 2.86 0.00 4.10 16 6 C -0.15 -1.76 7.23 71.98 0.52 -1.24 16 7 C 0.51 16.69 5.13 87.66 0.45 17.14 16 8 O -0.58 -25.25 16.24 -3.03 -0.05 -25.30 16 9 N -0.71 -21.67 5.25 -463.06 -2.43 -24.10 16 10 C 0.13 5.09 5.79 86.38 0.50 5.59 16 11 C 0.15 6.35 6.37 86.38 0.55 6.90 16 12 N -0.75 -39.96 5.60 -343.44 -1.92 -41.88 16 13 C -0.25 -14.32 9.99 84.04 0.84 -13.48 16 14 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 15 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 16 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 17 Si 0.98 46.33 29.55 68.60 2.03 48.35 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.17 -3.95 3.82 -10.79 -0.04 -3.99 16 22 C -0.14 -1.93 9.83 30.59 0.30 -1.63 16 23 C -0.17 -3.00 9.66 30.59 0.30 -2.70 16 24 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.08 1.11 8.12 -2.38 -0.02 1.09 16 26 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.43 1.59 8.48 -92.71 -0.79 0.80 16 28 H 0.11 0.48 6.95 -2.39 -0.02 0.46 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.09 6.73 -2.38 -0.02 1.08 16 31 H 0.41 9.57 7.81 -92.71 -0.72 8.85 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.37 21.67 7.67 -92.71 -0.71 20.96 16 37 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.06 2.20 7.48 -2.39 -0.02 2.18 16 39 H 0.13 0.90 7.27 -2.39 -0.02 0.89 16 40 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.12 1.61 5.89 -2.39 -0.01 1.59 16 Total: -1.00 -87.53 347.69 0.09 -87.44 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -1.17 Total: 31.99 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 5.25 Total: 16.43 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -5.92 Total: -138.71 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -0.09 Total: -45.50 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -87.53 0.09 -87.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147466914.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.285 kcal (2) G-P(sol) polarization free energy of solvation -87.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds