Wall clock time and date at job start Tue Mar 31 2020 02:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 5 5 O 1.21274 * 120.00042 * 239.72235 * 4 2 1 6 6 N 1.34777 * 119.99766 * 59.99771 * 4 2 1 7 7 C 1.46496 * 120.00266 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47425 * 180.02562 * 7 6 4 9 9 N 1.46496 * 109.47030 * 180.02562 * 8 7 6 10 10 C 1.36934 * 120.00157 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99751 * 359.97438 * 10 9 8 12 12 C 1.38815 * 120.00390 * 180.02562 * 10 9 8 13 13 N 1.31617 * 119.99916 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99958 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47228 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47000 * 119.99543 * 14 12 10 17 17 H 1.48501 * 109.46793 * 239.99635 * 14 12 10 18 18 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 19 19 C 1.45751 * 117.94784 * 239.99870 * 18 2 1 20 20 C 1.52919 * 110.48837 * 160.92597 * 19 18 2 21 21 C 1.53343 * 108.67455 * 50.75174 * 20 19 18 22 22 C 1.53069 * 108.43000 * 292.47098 * 21 20 19 23 23 C 1.33355 * 117.94559 * 59.74316 * 18 2 1 24 24 O 1.21278 * 118.24725 * 2.21258 * 23 18 2 25 25 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 28 28 H 0.96999 * 120.00043 * 0.02562 * 6 4 2 29 29 H 1.09004 * 109.47212 * 300.00463 * 7 6 4 30 30 H 1.09000 * 109.46684 * 60.00307 * 7 6 4 31 31 H 1.09000 * 109.46497 * 300.00014 * 8 7 6 32 32 H 1.08987 * 109.47025 * 60.00130 * 8 7 6 33 33 H 0.96999 * 120.00085 * 359.97438 * 9 8 7 34 34 H 0.97000 * 120.00284 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.29754 * 281.23594 * 19 18 2 36 36 H 1.08995 * 109.29971 * 40.61490 * 19 18 2 37 37 H 1.09004 * 109.60219 * 170.51136 * 20 19 18 38 38 H 1.08999 * 109.60452 * 290.99971 * 20 19 18 39 39 H 1.09005 * 109.67564 * 52.20525 * 21 20 19 40 40 H 1.09003 * 109.67591 * 172.73275 * 21 20 19 41 41 H 1.08998 * 109.40278 * 169.02376 * 22 21 20 42 42 H 1.09004 * 109.39997 * 288.86026 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7337 -1.6935 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9402 -3.6508 8 6 1.6857 -0.2186 -4.9000 9 7 2.1740 -0.9092 -6.0962 10 6 1.8439 -0.4409 -7.3399 11 1 1.2233 0.4374 -7.4389 12 6 2.3061 -1.0956 -8.4733 13 7 3.0620 -2.1662 -8.3526 14 14 1.8552 -0.4570 -10.1699 15 1 1.0018 0.7506 -10.0336 16 1 3.0929 -0.1077 -10.9124 17 1 1.1120 -1.5066 -10.9124 18 7 2.0183 -0.6906 1.1961 19 6 2.8530 0.0603 2.1256 20 6 2.8769 -0.6214 3.4942 21 6 3.2231 -2.1024 3.2992 22 6 2.0608 -2.7789 2.5681 23 6 1.6670 -1.9654 1.3690 24 8 0.9973 -2.4978 0.5094 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.1493 0.5389 -2.5436 29 1 3.2854 -0.9398 -3.6507 30 1 1.8324 -1.9680 -3.6509 31 1 0.5957 -0.2187 -4.9003 32 1 2.0490 0.8089 -4.8996 33 1 2.7317 -1.6978 -6.0072 34 1 3.3853 -2.6235 -9.1446 35 1 3.8684 0.1163 1.7332 36 1 2.4551 1.0693 2.2325 37 1 3.6305 -0.1495 4.1247 38 1 1.8970 -0.5337 3.9636 39 1 4.1323 -2.1915 2.7044 40 1 3.3713 -2.5756 4.2699 41 1 2.3651 -3.7756 2.2486 42 1 1.2073 -2.8592 3.2414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152162523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:50 Heat of formation + Delta-G solvation = -59.547483 kcal Electronic energy + Delta-G solvation = -22613.687225 eV Core-core repulsion = 19208.011932 eV Total energy + Delta-G solvation = -3405.675293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08385 -38.92597 -36.58344 -35.63058 -34.78309 -33.77402 -31.45927 -30.61418 -29.70015 -27.59204 -25.05218 -24.52038 -23.53986 -22.40270 -21.40344 -20.30033 -18.75642 -17.42143 -17.22898 -16.90407 -16.08733 -15.51789 -15.18865 -15.14992 -14.59356 -14.51520 -14.34858 -13.99695 -13.75804 -13.49558 -13.41859 -13.12185 -12.83173 -12.49360 -12.33121 -12.17822 -11.74937 -11.50939 -11.33348 -11.31572 -11.20061 -11.06464 -10.80018 -10.76598 -10.06218 -9.82829 -9.66623 -9.54686 -8.93716 -8.79359 -8.70218 -6.95947 -5.76653 -3.07212 2.55239 2.78673 2.87873 3.43625 3.44004 3.50224 3.51919 4.31252 4.36502 4.38728 4.52091 4.59990 4.75116 4.84110 4.89276 5.05428 5.08736 5.15804 5.35258 5.38894 5.47830 5.53687 5.53824 5.55830 5.61628 5.65290 5.83587 5.85442 6.00955 6.04226 6.21744 6.26998 6.57896 6.76685 6.83721 7.35222 7.68852 7.72786 8.18809 8.40744 8.49344 9.52118 10.07688 10.42478 11.46095 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.002833 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.334307 B = 9880.256060 C =10075.270221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 H 0.109 0.891 4 C 0.508 3.492 5 O -0.522 6.522 6 N -0.724 5.724 7 C 0.114 3.886 8 C 0.146 3.854 9 N -0.730 5.730 10 C -0.242 4.242 11 H 0.072 0.928 12 C -0.013 4.013 13 N -0.931 5.931 14 Si 0.910 3.090 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 N -0.593 5.593 19 C 0.114 3.886 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.131 4.131 23 C 0.523 3.477 24 O -0.530 6.530 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.397 0.603 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 7.201 28.265 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.127 0.873 4 C 0.291 3.709 5 O -0.397 6.397 6 N -0.376 5.376 7 C -0.010 4.010 8 C 0.017 3.983 9 N -0.375 5.375 10 C -0.373 4.373 11 H 0.090 0.910 12 C -0.210 4.210 13 N -0.579 5.579 14 Si 0.741 3.259 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 N -0.327 5.327 19 C -0.009 4.009 20 C -0.171 4.171 21 C -0.162 4.162 22 C -0.171 4.171 23 C 0.312 3.688 24 O -0.406 6.406 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.230 0.770 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.045 6.255 27.778 28.547 hybrid contribution -0.177 0.527 -1.022 1.163 sum -2.222 6.782 26.756 27.691 Atomic orbital electron populations 1.22175 0.92488 1.05262 1.02494 1.20943 0.96332 0.96319 0.84618 0.87281 1.20583 0.80780 0.84991 0.84527 1.90691 1.37240 1.25420 1.86300 1.45835 1.53996 1.32130 1.05675 1.21526 0.99350 0.96814 0.83268 1.20748 0.96711 0.94914 0.85884 1.42208 1.61596 1.33525 1.00172 1.19242 1.26047 1.08828 0.83212 0.90986 1.24788 1.00340 0.97841 0.97986 1.69682 1.39087 1.20712 1.28402 0.86075 0.77527 0.77861 0.84447 1.20518 1.21797 1.21782 1.47054 1.51760 1.11801 1.22059 1.21440 0.95078 0.95209 0.89193 1.21862 1.03028 0.96180 0.96037 1.21663 0.98430 0.95071 1.01070 1.21627 0.99929 1.00097 0.95426 1.19987 0.79704 0.81118 0.88017 1.90710 1.38897 1.68512 1.42501 0.91063 0.89452 0.91764 0.76951 0.91558 0.91397 0.95810 0.95875 0.78012 0.93427 0.91634 0.90653 0.89711 0.90920 0.90876 0.90614 0.88183 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 8.97 37.16 0.33 -1.33 16 2 C 0.13 1.39 3.02 -69.08 -0.21 1.18 16 3 H 0.11 0.83 7.79 -51.93 -0.40 0.43 16 4 C 0.51 8.01 6.37 -10.98 -0.07 7.94 16 5 O -0.52 -10.63 14.46 -16.17 -0.23 -10.86 16 6 N -0.72 -10.76 5.45 -60.29 -0.33 -11.09 16 7 C 0.11 2.13 5.79 -4.04 -0.02 2.10 16 8 C 0.15 2.98 6.37 -4.04 -0.03 2.96 16 9 N -0.73 -19.22 5.60 -59.92 -0.34 -19.55 16 10 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 11 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 12 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 13 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 14 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 18 N -0.59 -6.40 2.60 -168.70 -0.44 -6.84 16 19 C 0.11 0.77 6.25 -4.49 -0.03 0.74 16 20 C -0.13 -0.67 6.02 -26.60 -0.16 -0.83 16 21 C -0.12 -0.80 6.03 -26.52 -0.16 -0.96 16 22 C -0.13 -1.20 6.03 -28.11 -0.17 -1.36 16 23 C 0.52 6.89 6.20 -11.88 -0.07 6.81 16 24 O -0.53 -9.41 12.78 -16.18 -0.21 -9.61 16 25 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 26 H 0.09 1.18 5.99 -51.93 -0.31 0.86 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.40 4.57 7.89 -40.82 -0.32 4.25 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.46 8.14 -51.94 -0.42 0.04 16 33 H 0.39 10.79 7.67 -40.82 -0.31 10.48 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.34 8.03 -51.93 -0.42 -0.07 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 39 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -37.60 340.12 -8.33 -45.92 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.78 Total: 7.73 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.83 Total: 9.69 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.38 Total: -65.64 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.44 Total: -20.48 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.60 -8.33 -45.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152162523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.623 kcal (2) G-P(sol) polarization free energy of solvation -37.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds