Wall clock time and date at job start Tue Mar 31 2020 02:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47103 * 239.99953 * 2 1 3 5 5 O 1.21274 * 120.00042 * 239.72235 * 4 2 1 6 6 N 1.34777 * 119.99766 * 59.99771 * 4 2 1 7 7 C 1.46496 * 120.00266 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47425 * 180.02562 * 7 6 4 9 9 N 1.46496 * 109.47030 * 180.02562 * 8 7 6 10 10 C 1.36934 * 120.00157 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99751 * 359.97438 * 10 9 8 12 12 C 1.38815 * 120.00390 * 180.02562 * 10 9 8 13 13 N 1.31617 * 119.99916 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99958 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47228 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47000 * 119.99543 * 14 12 10 17 17 H 1.48501 * 109.46793 * 239.99635 * 14 12 10 18 18 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 19 19 C 1.45751 * 117.94784 * 239.99870 * 18 2 1 20 20 C 1.52919 * 110.48837 * 160.92597 * 19 18 2 21 21 C 1.53343 * 108.67455 * 50.75174 * 20 19 18 22 22 C 1.53069 * 108.43000 * 292.47098 * 21 20 19 23 23 C 1.33355 * 117.94559 * 59.74316 * 18 2 1 24 24 O 1.21278 * 118.24725 * 2.21258 * 23 18 2 25 25 H 1.09001 * 109.47375 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47230 * 299.99144 * 1 2 3 28 28 H 0.96999 * 120.00043 * 0.02562 * 6 4 2 29 29 H 1.09004 * 109.47212 * 300.00463 * 7 6 4 30 30 H 1.09000 * 109.46684 * 60.00307 * 7 6 4 31 31 H 1.09000 * 109.46497 * 300.00014 * 8 7 6 32 32 H 1.08987 * 109.47025 * 60.00130 * 8 7 6 33 33 H 0.96999 * 120.00085 * 359.97438 * 9 8 7 34 34 H 0.97000 * 120.00284 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.29754 * 281.23594 * 19 18 2 36 36 H 1.08995 * 109.29971 * 40.61490 * 19 18 2 37 37 H 1.09004 * 109.60219 * 170.51136 * 20 19 18 38 38 H 1.08999 * 109.60452 * 290.99971 * 20 19 18 39 39 H 1.09005 * 109.67564 * 52.20525 * 21 20 19 40 40 H 1.09003 * 109.67591 * 172.73275 * 21 20 19 41 41 H 1.08998 * 109.40278 * 169.02376 * 22 21 20 42 42 H 1.09004 * 109.39997 * 288.86026 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7337 -1.6935 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9402 -3.6508 8 6 1.6857 -0.2186 -4.9000 9 7 2.1740 -0.9092 -6.0962 10 6 1.8439 -0.4409 -7.3399 11 1 1.2233 0.4374 -7.4389 12 6 2.3061 -1.0956 -8.4733 13 7 3.0620 -2.1662 -8.3526 14 14 1.8552 -0.4570 -10.1699 15 1 1.0018 0.7506 -10.0336 16 1 3.0929 -0.1077 -10.9124 17 1 1.1120 -1.5066 -10.9124 18 7 2.0183 -0.6906 1.1961 19 6 2.8530 0.0603 2.1256 20 6 2.8769 -0.6214 3.4942 21 6 3.2231 -2.1024 3.2992 22 6 2.0608 -2.7789 2.5681 23 6 1.6670 -1.9654 1.3690 24 8 0.9973 -2.4978 0.5094 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 1.1493 0.5389 -2.5436 29 1 3.2854 -0.9398 -3.6507 30 1 1.8324 -1.9680 -3.6509 31 1 0.5957 -0.2187 -4.9003 32 1 2.0490 0.8089 -4.8996 33 1 2.7317 -1.6978 -6.0072 34 1 3.3853 -2.6235 -9.1446 35 1 3.8684 0.1163 1.7332 36 1 2.4551 1.0693 2.2325 37 1 3.6305 -0.1495 4.1247 38 1 1.8970 -0.5337 3.9636 39 1 4.1323 -2.1915 2.7044 40 1 3.3713 -2.5756 4.2699 41 1 2.3651 -3.7756 2.2486 42 1 1.2073 -2.8592 3.2414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152162523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:50 Heat of formation + Delta-G solvation = -87.567712 kcal Electronic energy + Delta-G solvation = -22614.902273 eV Core-core repulsion = 19208.011932 eV Total energy + Delta-G solvation = -3406.890342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.03512 -40.13039 -37.42864 -37.32278 -35.66810 -35.47741 -33.23024 -31.66986 -30.42447 -29.28359 -26.12741 -25.49039 -24.98312 -23.46028 -22.93930 -21.38073 -19.67839 -19.27596 -18.32110 -17.93386 -17.15994 -16.67435 -16.57448 -16.32328 -16.24423 -15.38131 -15.31143 -15.24001 -15.06956 -14.84519 -14.55657 -14.37021 -14.14356 -13.37325 -13.26359 -13.07211 -13.02786 -12.95375 -12.68609 -12.53090 -12.47604 -12.10739 -12.06243 -11.86867 -11.83935 -11.79015 -11.02560 -10.92736 -10.49490 -10.14876 -9.69091 -9.09648 -7.98621 -5.30823 1.46891 1.49194 1.57009 1.59588 1.68261 1.95945 2.26628 2.57266 3.35599 3.58033 3.74374 3.86772 3.91451 3.96244 3.99410 4.03715 4.10284 4.13973 4.19420 4.49810 4.51347 4.54118 4.61757 4.71887 4.81245 4.90533 4.93618 4.99418 5.09766 5.10343 5.12547 5.24533 5.37525 5.38074 5.47140 5.49797 6.21776 6.50378 6.56013 7.21749 7.27492 7.34158 7.98676 8.22332 9.25550 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.041512 B = 0.002833 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.334307 B = 9880.256060 C =10075.270221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.155 0.845 4 C 0.499 3.501 5 O -0.575 6.575 6 N -0.711 5.711 7 C 0.132 3.868 8 C 0.152 3.848 9 N -0.749 5.749 10 C -0.247 4.247 11 H 0.085 0.915 12 C -0.080 4.080 13 N -0.973 5.973 14 Si 0.982 3.018 15 H -0.260 1.260 16 H -0.292 1.292 17 H -0.294 1.294 18 N -0.591 5.591 19 C 0.103 3.897 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.131 4.131 23 C 0.509 3.491 24 O -0.589 6.589 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.417 0.583 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.372 0.628 34 H 0.252 0.748 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 10.359 30.110 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.020 3.980 3 H 0.173 0.827 4 C 0.286 3.714 5 O -0.453 6.453 6 N -0.365 5.365 7 C 0.007 3.993 8 C 0.025 3.975 9 N -0.392 5.392 10 C -0.379 4.379 11 H 0.103 0.897 12 C -0.272 4.272 13 N -0.623 5.623 14 Si 0.810 3.190 15 H -0.184 1.184 16 H -0.219 1.219 17 H -0.221 1.221 18 N -0.323 5.323 19 C -0.018 4.018 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.170 4.170 23 C 0.299 3.701 24 O -0.469 6.469 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.254 0.746 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.204 0.796 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.817 9.516 29.685 31.300 hybrid contribution 0.056 -0.443 -1.511 1.576 sum -2.762 9.073 28.174 29.727 Atomic orbital electron populations 1.22127 0.91472 1.03379 1.04723 1.21149 0.97022 0.97550 0.82284 0.82731 1.21629 0.79598 0.84428 0.85791 1.90668 1.39701 1.27888 1.87093 1.45650 1.53966 1.32402 1.04481 1.21052 0.98253 0.95585 0.84398 1.20832 0.97070 0.95189 0.84410 1.42469 1.61674 1.33560 1.01514 1.19713 1.25234 1.08770 0.84159 0.89689 1.25732 1.00876 0.98365 1.02195 1.69859 1.40874 1.22409 1.29192 0.84949 0.77189 0.77684 0.79143 1.18399 1.21901 1.22115 1.47257 1.51335 1.11439 1.22281 1.21817 0.94340 0.96512 0.89178 1.21887 1.04510 0.94649 0.95349 1.21671 0.96270 0.96490 1.01402 1.21667 1.01877 0.98909 0.94563 1.20747 0.78894 0.82017 0.88421 1.90684 1.41600 1.69931 1.44725 0.89435 0.93325 0.88901 0.74618 0.93112 0.94316 0.94630 0.93882 0.79645 0.93891 0.92097 0.87308 0.87043 0.89820 0.92541 0.88229 0.89883 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 8.97 71.98 0.65 -2.22 16 2 C 0.13 2.56 3.02 44.25 0.13 2.69 16 3 H 0.16 1.69 7.79 -2.39 -0.02 1.67 16 4 C 0.50 15.75 6.37 87.66 0.56 16.30 16 5 O -0.58 -24.48 14.46 17.77 0.26 -24.22 16 6 N -0.71 -20.73 5.45 -463.06 -2.52 -23.25 16 7 C 0.13 5.05 5.79 86.38 0.50 5.55 16 8 C 0.15 6.12 6.37 86.38 0.55 6.67 16 9 N -0.75 -39.85 5.60 -343.47 -1.92 -41.77 16 10 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 11 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 12 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 13 N -0.97 -61.71 13.06 21.65 0.28 -61.42 16 14 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 16 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 18 N -0.59 -11.88 2.60 -806.83 -2.10 -13.98 16 19 C 0.10 1.07 6.25 86.49 0.54 1.61 16 20 C -0.13 -0.82 6.02 30.68 0.18 -0.64 16 21 C -0.12 -1.34 6.03 30.73 0.19 -1.15 16 22 C -0.13 -2.37 6.03 29.70 0.18 -2.19 16 23 C 0.51 13.58 6.20 87.71 0.54 14.12 16 24 O -0.59 -22.08 12.78 17.76 0.23 -21.85 16 25 H 0.09 1.25 7.56 -2.39 -0.02 1.23 16 26 H 0.05 1.31 5.99 -2.39 -0.01 1.30 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.42 8.69 7.89 -92.71 -0.73 7.96 16 29 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.37 21.56 7.67 -92.71 -0.71 20.85 16 34 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 0.45 8.03 -2.39 -0.02 0.43 16 37 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.08 0.42 8.12 -2.39 -0.02 0.40 16 39 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 40 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -86.35 340.12 1.16 -85.19 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.42 Total: 29.34 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 5.33 Total: 23.32 kcal Atomic # 7 Polarization: -134.16 SS G_CDS: -6.26 Total: -140.43 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: 0.48 Total: -46.07 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -86.35 1.16 -85.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152162523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.379 kcal (2) G-P(sol) polarization free energy of solvation -86.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds