Wall clock time and date at job start Tue Mar 31 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46548 * 2 1 4 4 N 1.46502 * 109.46983 * 240.01134 * 2 1 3 5 5 C 1.34768 * 120.00739 * 84.99790 * 4 2 1 6 6 O 1.21288 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00434 * 179.97438 * 5 4 2 8 8 C 1.53786 * 113.61519 * 80.85965 * 7 5 4 9 9 C 1.53962 * 87.01719 * 89.23113 * 8 7 5 10 10 C 1.53781 * 113.61630 * 178.46913 * 7 5 4 11 11 C 1.50693 * 109.47520 * 120.00464 * 2 1 3 12 12 O 1.21276 * 120.00268 * 120.00258 * 11 2 1 13 13 N 1.34783 * 119.99667 * 300.00515 * 11 2 1 14 14 C 1.46501 * 119.99558 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.46774 * 179.97438 * 14 13 11 16 16 N 1.46501 * 109.46774 * 179.97438 * 15 14 13 17 17 C 1.36942 * 119.99832 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99611 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99888 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99788 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00156 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46820 * 90.00202 * 21 19 17 23 23 H 1.48493 * 109.47063 * 210.00550 * 21 19 17 24 24 H 1.48501 * 109.46874 * 330.00432 * 21 19 17 25 25 H 1.09002 * 109.47188 * 299.99410 * 1 2 3 26 26 H 1.08999 * 109.47689 * 59.99727 * 1 2 3 27 27 H 1.09006 * 109.46499 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99261 * 264.98864 * 4 2 1 29 29 H 1.09002 * 112.84782 * 309.66555 * 7 5 4 30 30 H 1.08993 * 113.61491 * 203.75234 * 8 7 5 31 31 H 1.09000 * 113.61138 * 334.65572 * 8 7 5 32 32 H 1.08997 * 113.53543 * 270.80998 * 9 8 7 33 33 H 1.08994 * 113.66446 * 139.93200 * 9 8 7 34 34 H 1.09001 * 113.61695 * 25.34764 * 10 7 5 35 35 H 1.08996 * 113.61580 * 156.17042 * 10 7 5 36 36 H 0.96997 * 120.00240 * 359.97438 * 13 11 2 37 37 H 1.09004 * 109.46911 * 299.99516 * 14 13 11 38 38 H 1.08997 * 109.47312 * 59.99899 * 14 13 11 39 39 H 1.08994 * 109.47330 * 299.99601 * 15 14 13 40 40 H 1.08997 * 109.47132 * 59.99975 * 15 14 13 41 41 H 0.96997 * 120.00202 * 359.97438 * 16 15 14 42 42 H 0.97001 * 119.99779 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8581 1.1587 -2.4116 7 6 2.6499 -0.7281 -3.5876 8 6 1.5675 -1.5447 -4.3132 9 6 1.2556 -0.2679 -5.1151 10 6 2.7040 0.1672 -4.8367 11 6 2.0324 -0.7105 1.2303 12 8 2.7297 -1.6964 1.1190 13 7 1.7068 -0.2501 2.4545 14 6 2.1947 -0.9411 3.6506 15 6 1.6853 -0.2196 4.8999 16 7 2.1727 -0.9110 6.0960 17 6 1.8418 -0.4433 7.3398 18 1 1.2218 0.4354 7.4389 19 6 2.3041 -1.0981 8.4731 20 7 1.9864 -0.6484 9.6686 21 14 3.3771 -2.6176 8.3016 22 1 4.8051 -2.2125 8.2563 23 1 3.1537 -3.5150 9.4633 24 1 3.0255 -3.3329 7.0486 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0278 -0.0005 28 1 2.2491 -1.6316 -1.1528 29 1 3.5701 -1.2844 -3.4089 30 1 1.9670 -2.3558 -4.9218 31 1 0.7523 -1.8635 -3.6637 32 1 0.5093 0.3711 -4.6430 33 1 1.0502 -0.4527 -6.1694 34 1 2.8050 1.2285 -4.6093 35 1 3.4159 -0.1742 -5.5881 36 1 1.1493 0.5387 2.5436 37 1 1.8310 -1.9687 3.6503 38 1 3.2847 -0.9415 3.6507 39 1 2.0493 0.8078 4.9000 40 1 0.5953 -0.2188 4.9000 41 1 2.7293 -1.7004 6.0069 42 1 2.3092 -1.1061 10.4605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153694197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:56 Heat of formation + Delta-G solvation = -44.566270 kcal Electronic energy + Delta-G solvation = -21781.099289 eV Core-core repulsion = 18376.073630 eV Total energy + Delta-G solvation = -3405.025659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96567 -39.84277 -37.63043 -36.05126 -35.14695 -34.11286 -31.76824 -30.99184 -28.19297 -26.90788 -26.02816 -24.80275 -23.25674 -21.72230 -21.56737 -20.38529 -19.70698 -17.99458 -17.55508 -17.00666 -16.52889 -15.84334 -15.80815 -15.52283 -14.87835 -14.79403 -14.35758 -14.08402 -13.81718 -13.67601 -13.58298 -12.86859 -12.84901 -12.69035 -12.65980 -12.46440 -11.95461 -11.64661 -11.56542 -11.37346 -11.02901 -10.89314 -10.80701 -10.78948 -10.20793 -10.13602 -10.02568 -9.66561 -9.45696 -9.17045 -8.96147 -7.35243 -5.83841 -3.21748 2.25586 2.41641 2.56495 3.18711 3.34823 3.38100 3.42821 4.10883 4.19066 4.27672 4.42532 4.45731 4.53672 4.71507 4.77855 4.86378 5.20139 5.21393 5.26254 5.28624 5.36573 5.38849 5.43977 5.50749 5.53370 5.58116 5.67740 5.71524 5.78791 5.87081 5.98189 6.04235 6.24246 6.51262 6.51762 7.18466 7.32936 7.88785 7.90000 8.00651 8.33960 9.11327 9.83549 10.01421 11.33861 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.046681 B = 0.002497 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.672771 B =11208.679902 C =11520.762457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.115 0.885 4 N -0.710 5.710 5 C 0.536 3.464 6 O -0.538 6.538 7 C -0.142 4.142 8 C -0.125 4.125 9 C -0.142 4.142 10 C -0.121 4.121 11 C 0.509 3.491 12 O -0.539 6.539 13 N -0.715 5.715 14 C 0.107 3.893 15 C 0.148 3.852 16 N -0.752 5.752 17 C -0.250 4.250 18 H 0.092 0.908 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.276 1.276 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.411 0.589 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.404 0.596 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.363 0.637 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -0.417 -29.845 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 H 0.133 0.867 4 N -0.364 5.364 5 C 0.323 3.677 6 O -0.415 6.415 7 C -0.163 4.163 8 C -0.163 4.163 9 C -0.179 4.179 10 C -0.159 4.159 11 C 0.294 3.706 12 O -0.417 6.417 13 N -0.366 5.366 14 C -0.017 4.017 15 C 0.020 3.980 16 N -0.399 5.399 17 C -0.380 4.380 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.578 5.578 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.248 0.752 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.239 0.761 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.196 0.804 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.673 -0.143 -29.732 29.780 hybrid contribution 0.685 -1.218 0.298 1.428 sum -0.989 -1.361 -29.434 29.482 Atomic orbital electron populations 1.22140 0.92610 1.03288 1.03773 1.20770 0.95824 0.98174 0.83631 0.86694 1.45730 1.67357 1.14933 1.08350 1.20095 0.76906 0.86888 0.83834 1.90694 1.49884 1.15890 1.84984 1.22422 1.01021 0.99693 0.93174 1.22872 0.97599 0.97149 0.98667 1.22925 0.97511 0.97063 1.00429 1.22758 0.97306 1.00778 0.95047 1.20504 0.80474 0.84820 0.84811 1.90704 1.37977 1.26379 1.86596 1.45824 1.53239 1.32095 1.05474 1.21653 0.99732 0.96803 0.83475 1.20735 0.97304 0.95215 0.84725 1.42525 1.62501 1.32985 1.01867 1.19003 1.27289 1.10370 0.81295 0.89057 1.24686 1.00288 0.98925 0.95037 1.69700 1.49419 1.41865 0.96802 0.86536 0.81048 0.83829 0.77056 1.20911 1.21563 1.20212 0.90614 0.90792 0.91647 0.75211 0.87950 0.88952 0.91014 0.89766 0.91192 0.89906 0.89407 0.76138 0.91142 0.91174 0.94790 0.94847 0.80388 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.38 37.16 0.35 -0.94 16 2 C 0.12 1.23 2.98 -69.08 -0.21 1.02 16 3 H 0.12 1.16 7.58 -51.93 -0.39 0.76 16 4 N -0.71 -6.86 4.95 -54.93 -0.27 -7.13 16 5 C 0.54 5.45 7.04 -10.99 -0.08 5.37 16 6 O -0.54 -7.06 15.49 5.55 0.09 -6.98 16 7 C -0.14 -1.05 4.34 -90.96 -0.39 -1.44 16 8 C -0.13 -0.74 7.68 -25.82 -0.20 -0.94 16 9 C -0.14 -0.95 7.76 -25.82 -0.20 -1.15 16 10 C -0.12 -0.86 7.46 -25.92 -0.19 -1.05 16 11 C 0.51 6.28 7.22 -10.99 -0.08 6.20 16 12 O -0.54 -8.44 15.84 5.56 0.09 -8.35 16 13 N -0.71 -8.45 5.45 -60.29 -0.33 -8.77 16 14 C 0.11 1.62 5.79 -4.04 -0.02 1.60 16 15 C 0.15 2.64 6.37 -4.04 -0.03 2.62 16 16 N -0.75 -17.49 5.41 -59.91 -0.32 -17.82 16 17 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 21 Si 0.89 21.93 27.74 -169.99 -4.71 17.21 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 25 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.41 3.74 7.79 -40.82 -0.32 3.43 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.73 7.41 -51.93 -0.38 0.35 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.40 3.69 7.89 -40.82 -0.32 3.37 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.36 8.30 5.53 -40.82 -0.23 8.08 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -34.21 349.36 -7.43 -41.64 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.70 Total: 8.81 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.30 Total: 4.26 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.15 Total: -61.87 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.17 Total: -15.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.21 -7.43 -41.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153694197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.925 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds