Wall clock time and date at job start Tue Mar 31 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46548 * 2 1 4 4 N 1.46502 * 109.46983 * 240.01134 * 2 1 3 5 5 C 1.34768 * 120.00739 * 84.99790 * 4 2 1 6 6 O 1.21288 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00434 * 179.97438 * 5 4 2 8 8 C 1.53786 * 113.61519 * 80.85965 * 7 5 4 9 9 C 1.53962 * 87.01719 * 89.23113 * 8 7 5 10 10 C 1.53781 * 113.61630 * 178.46913 * 7 5 4 11 11 C 1.50693 * 109.47520 * 120.00464 * 2 1 3 12 12 O 1.21276 * 120.00268 * 120.00258 * 11 2 1 13 13 N 1.34783 * 119.99667 * 300.00515 * 11 2 1 14 14 C 1.46501 * 119.99558 * 179.97438 * 13 11 2 15 15 C 1.53003 * 109.46774 * 179.97438 * 14 13 11 16 16 N 1.46501 * 109.46774 * 179.97438 * 15 14 13 17 17 C 1.36942 * 119.99832 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99611 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99888 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99788 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00156 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46820 * 90.00202 * 21 19 17 23 23 H 1.48493 * 109.47063 * 210.00550 * 21 19 17 24 24 H 1.48501 * 109.46874 * 330.00432 * 21 19 17 25 25 H 1.09002 * 109.47188 * 299.99410 * 1 2 3 26 26 H 1.08999 * 109.47689 * 59.99727 * 1 2 3 27 27 H 1.09006 * 109.46499 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99261 * 264.98864 * 4 2 1 29 29 H 1.09002 * 112.84782 * 309.66555 * 7 5 4 30 30 H 1.08993 * 113.61491 * 203.75234 * 8 7 5 31 31 H 1.09000 * 113.61138 * 334.65572 * 8 7 5 32 32 H 1.08997 * 113.53543 * 270.80998 * 9 8 7 33 33 H 1.08994 * 113.66446 * 139.93200 * 9 8 7 34 34 H 1.09001 * 113.61695 * 25.34764 * 10 7 5 35 35 H 1.08996 * 113.61580 * 156.17042 * 10 7 5 36 36 H 0.96997 * 120.00240 * 359.97438 * 13 11 2 37 37 H 1.09004 * 109.46911 * 299.99516 * 14 13 11 38 38 H 1.08997 * 109.47312 * 59.99899 * 14 13 11 39 39 H 1.08994 * 109.47330 * 299.99601 * 15 14 13 40 40 H 1.08997 * 109.47132 * 59.99975 * 15 14 13 41 41 H 0.96997 * 120.00202 * 359.97438 * 16 15 14 42 42 H 0.97001 * 119.99779 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8581 1.1587 -2.4116 7 6 2.6499 -0.7281 -3.5876 8 6 1.5675 -1.5447 -4.3132 9 6 1.2556 -0.2679 -5.1151 10 6 2.7040 0.1672 -4.8367 11 6 2.0324 -0.7105 1.2303 12 8 2.7297 -1.6964 1.1190 13 7 1.7068 -0.2501 2.4545 14 6 2.1947 -0.9411 3.6506 15 6 1.6853 -0.2196 4.8999 16 7 2.1727 -0.9110 6.0960 17 6 1.8418 -0.4433 7.3398 18 1 1.2218 0.4354 7.4389 19 6 2.3041 -1.0981 8.4731 20 7 1.9864 -0.6484 9.6686 21 14 3.3771 -2.6176 8.3016 22 1 4.8051 -2.2125 8.2563 23 1 3.1537 -3.5150 9.4633 24 1 3.0255 -3.3329 7.0486 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0278 -0.0005 28 1 2.2491 -1.6316 -1.1528 29 1 3.5701 -1.2844 -3.4089 30 1 1.9670 -2.3558 -4.9218 31 1 0.7523 -1.8635 -3.6637 32 1 0.5093 0.3711 -4.6430 33 1 1.0502 -0.4527 -6.1694 34 1 2.8050 1.2285 -4.6093 35 1 3.4159 -0.1742 -5.5881 36 1 1.1493 0.5387 2.5436 37 1 1.8310 -1.9687 3.6503 38 1 3.2847 -0.9415 3.6507 39 1 2.0493 0.8078 4.9000 40 1 0.5953 -0.2188 4.9000 41 1 2.7293 -1.7004 6.0069 42 1 2.3092 -1.1061 10.4605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153694197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:55 Heat of formation + Delta-G solvation = -70.736795 kcal Electronic energy + Delta-G solvation = -21782.234128 eV Core-core repulsion = 18376.073630 eV Total energy + Delta-G solvation = -3406.160498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76539 -40.77017 -38.32991 -37.50481 -36.04604 -35.63759 -33.54902 -32.07551 -29.67869 -27.52011 -26.53061 -25.96332 -24.70223 -23.17134 -22.48372 -21.33769 -20.47926 -19.84645 -18.40662 -17.94096 -17.47494 -16.88905 -16.67336 -16.52279 -16.24927 -15.72625 -15.63286 -15.53355 -15.12387 -14.80627 -14.56816 -14.30787 -13.73938 -13.48615 -13.36160 -13.28189 -13.18261 -13.04184 -12.74614 -12.65491 -12.60425 -12.08713 -11.93961 -11.83221 -11.32775 -11.32220 -11.10561 -11.04130 -10.85268 -10.31340 -10.20444 -9.36774 -8.05378 -5.40975 1.38852 1.39206 1.41265 1.48056 1.50114 1.70397 2.29300 2.46663 3.26323 3.40155 3.55283 3.66300 3.73158 3.79426 3.93847 3.95968 3.99293 4.04640 4.19640 4.27252 4.53371 4.62097 4.69418 4.75156 4.83128 4.89516 4.97439 5.03966 5.08784 5.11115 5.13839 5.18523 5.26774 5.28253 5.47922 5.72348 6.17340 6.36391 6.42761 7.01163 7.04285 7.13281 7.77451 7.94872 9.15293 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.046681 B = 0.002497 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.672771 B =11208.679902 C =11520.762457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 H 0.115 0.885 4 N -0.708 5.708 5 C 0.533 3.467 6 O -0.573 6.573 7 C -0.146 4.146 8 C -0.114 4.114 9 C -0.145 4.145 10 C -0.122 4.122 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.123 3.877 15 C 0.148 3.852 16 N -0.758 5.758 17 C -0.238 4.238 18 H 0.063 0.937 19 C -0.062 4.062 20 N -0.980 5.980 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.251 1.251 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.415 0.585 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.419 0.581 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.367 0.633 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -1.759 -32.062 32.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.132 0.868 4 N -0.361 5.361 5 C 0.321 3.679 6 O -0.452 6.452 7 C -0.167 4.167 8 C -0.152 4.152 9 C -0.182 4.182 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.451 6.451 13 N -0.357 5.357 14 C -0.002 4.002 15 C 0.022 3.978 16 N -0.405 5.405 17 C -0.368 4.368 18 H 0.081 0.919 19 C -0.254 4.254 20 N -0.630 5.630 21 Si 0.781 3.219 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.176 1.176 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.252 0.748 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.256 0.744 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.200 0.800 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.327 -1.472 -32.007 32.069 hybrid contribution 0.515 -0.689 0.940 1.275 sum -0.811 -2.161 -31.067 31.153 Atomic orbital electron populations 1.22113 0.91004 1.03626 1.04443 1.20757 0.96925 0.97624 0.82572 0.86753 1.45771 1.67042 1.15068 1.08202 1.20615 0.76157 0.86557 0.84551 1.90678 1.51513 1.17457 1.85546 1.22490 1.02153 1.00039 0.91983 1.22893 0.96869 0.97149 0.98264 1.22908 0.96715 0.97238 1.01348 1.22817 0.98193 0.99406 0.95522 1.20850 0.79659 0.84283 0.85254 1.90693 1.39423 1.27901 1.87039 1.45642 1.53214 1.32349 1.04500 1.21274 0.99154 0.96392 0.83345 1.20850 0.97700 0.95276 0.84005 1.42537 1.62672 1.33428 1.01863 1.19002 1.25555 1.08992 0.83296 0.91904 1.25523 1.02526 1.02674 0.94689 1.69874 1.51568 1.43843 0.97721 0.85425 0.78971 0.79793 0.77706 1.20452 1.22117 1.17604 0.88935 0.91159 0.91434 0.74757 0.86325 0.86616 0.91251 0.91862 0.89646 0.92253 0.87151 0.74404 0.91574 0.91897 0.94139 0.93907 0.79987 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.38 71.98 0.68 -1.53 16 2 C 0.13 2.38 2.98 44.24 0.13 2.51 16 3 H 0.11 2.17 7.58 -2.39 -0.02 2.15 16 4 N -0.71 -12.83 4.95 -446.10 -2.21 -15.04 16 5 C 0.53 10.42 7.04 87.66 0.62 11.04 16 6 O -0.57 -15.03 15.49 -3.05 -0.05 -15.08 16 7 C -0.15 -1.92 4.34 -11.01 -0.05 -1.97 16 8 C -0.11 -1.10 7.68 31.18 0.24 -0.86 16 9 C -0.14 -1.75 7.76 31.18 0.24 -1.50 16 10 C -0.12 -1.57 7.46 31.12 0.23 -1.34 16 11 C 0.51 11.77 7.22 87.65 0.63 12.41 16 12 O -0.57 -17.00 15.84 -3.02 -0.05 -17.05 16 13 N -0.70 -15.14 5.45 -463.05 -2.52 -17.66 16 14 C 0.12 3.46 5.79 86.38 0.50 3.96 16 15 C 0.15 5.03 6.37 86.38 0.55 5.58 16 16 N -0.76 -34.15 5.41 -343.45 -1.86 -36.01 16 17 C -0.24 -13.25 10.47 84.03 0.88 -12.36 16 18 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 19 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 20 N -0.98 -62.04 13.97 21.65 0.30 -61.74 16 21 Si 0.95 44.93 27.74 68.60 1.90 46.83 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 25 H 0.09 1.01 7.56 -2.39 -0.02 0.99 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.41 6.98 7.79 -92.71 -0.72 6.25 16 29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 1.06 7.41 -2.39 -0.02 1.04 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.42 6.61 7.89 -92.71 -0.73 5.88 16 37 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.37 15.94 5.53 -92.71 -0.51 15.42 16 42 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -74.12 349.36 -0.34 -74.47 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.99 Total: 28.51 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.12 Total: 12.77 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -6.29 Total: -130.44 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.10 Total: -32.13 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Total: -74.12 -0.34 -74.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153694197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.729 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds