Wall clock time and date at job start Tue Mar 31 2020 02:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47139 * 2 1 4 4 C 1.36930 * 120.00220 * 275.72850 * 3 2 1 5 5 H 1.08003 * 119.99683 * 33.27271 * 4 3 2 6 6 C 1.38812 * 120.00630 * 213.26857 * 4 3 2 7 7 N 1.31618 * 119.99489 * 17.27893 * 6 4 3 8 8 Si 1.86797 * 120.00354 * 197.27424 * 6 4 3 9 9 H 1.48504 * 109.46987 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46894 * 120.00183 * 8 6 4 11 11 H 1.48499 * 109.47118 * 240.00086 * 8 6 4 12 12 C 1.46504 * 119.99756 * 95.73155 * 3 2 1 13 13 H 1.09003 * 109.46532 * 180.08306 * 12 3 2 14 14 C 1.53001 * 109.47591 * 60.08175 * 12 3 2 15 15 C 1.53002 * 109.47088 * 300.07964 * 12 3 2 16 16 N 1.46497 * 109.47202 * 305.00256 * 15 12 3 17 17 C 1.34777 * 120.00192 * 180.02562 * 16 15 12 18 18 O 1.21277 * 119.99902 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00135 * 180.02562 * 17 16 15 20 20 H 1.08993 * 110.43347 * 57.45589 * 19 17 16 21 21 C 1.54627 * 110.48484 * 179.97438 * 19 17 16 22 22 C 1.54477 * 101.76336 * 93.88005 * 21 19 17 23 23 N 1.46755 * 105.47618 * 25.41479 * 22 21 19 24 24 C 1.34423 * 111.30378 * 342.98362 * 23 22 21 25 25 O 1.21277 * 124.94675 * 180.44305 * 24 23 22 26 26 H 1.09003 * 109.46640 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47091 * 300.00391 * 1 2 3 28 28 H 1.08994 * 109.46734 * 60.00471 * 1 2 3 29 29 H 1.08995 * 109.47821 * 239.99502 * 2 1 3 30 30 H 1.09000 * 109.47042 * 119.99766 * 2 1 3 31 31 H 0.97004 * 120.00168 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.46760 * 59.99548 * 14 12 3 33 33 H 1.08991 * 109.47395 * 179.97438 * 14 12 3 34 34 H 1.09001 * 109.46567 * 300.00250 * 14 12 3 35 35 H 1.09002 * 109.46874 * 185.00704 * 15 12 3 36 36 H 1.09002 * 109.47159 * 65.00319 * 15 12 3 37 37 H 0.97006 * 120.00126 * 0.02562 * 16 15 12 38 38 H 1.08998 * 110.96617 * 211.99826 * 21 19 17 39 39 H 1.09002 * 110.97022 * 335.72732 * 21 19 17 40 40 H 1.09005 * 110.24888 * 144.41475 * 22 21 19 41 41 H 1.09005 * 110.24693 * 266.32608 * 22 21 19 42 42 H 0.97001 * 124.35434 * 162.98596 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0662 -1.1799 5 1 1.4370 1.8810 -1.9830 6 6 3.1502 2.9987 -1.3438 7 7 4.1872 2.9917 -0.5334 8 14 3.0445 4.2632 -2.7146 9 1 1.7882 4.0599 -3.4799 10 1 3.0524 5.6284 -2.1304 11 1 4.2088 4.1069 -3.6231 12 6 2.3820 2.0296 1.2624 13 1 2.7190 3.0471 1.0643 14 6 3.5076 1.2412 1.9351 15 6 1.1629 2.0669 2.1862 16 7 0.0466 2.7175 1.4957 17 6 -1.1387 2.8642 2.1202 18 8 -1.2813 2.4572 3.2537 19 6 -2.2871 3.5330 1.4096 20 1 -2.5164 3.0102 0.4811 21 6 -3.5333 3.5834 2.3236 22 6 -3.3923 4.9786 2.9717 23 7 -2.6031 5.7730 2.0231 24 6 -1.9673 4.9864 1.1378 25 8 -1.2422 5.3839 0.2506 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.8965 3.6435 -0.6476 32 1 4.3761 1.2146 1.2769 33 1 3.7784 1.7238 2.8740 34 1 3.1705 0.2237 2.1330 35 1 1.4079 2.6270 3.0886 36 1 0.8799 1.0493 2.4557 37 1 0.1606 3.0428 0.5889 38 1 -4.4499 3.5164 1.7375 39 1 -3.4963 2.7970 3.0775 40 1 -4.3745 5.4290 3.1152 41 1 -2.8708 4.9004 3.9257 42 1 -2.5474 6.7414 2.0336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154601521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:08 Heat of formation + Delta-G solvation = -53.365433 kcal Electronic energy + Delta-G solvation = -24083.019627 eV Core-core repulsion = 20677.612408 eV Total energy + Delta-G solvation = -3405.407219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79531 -38.65408 -36.96034 -36.18009 -33.64049 -31.84563 -31.66025 -30.87695 -28.24745 -27.92013 -25.36031 -23.88361 -22.30312 -21.67272 -21.30855 -19.58417 -19.14325 -17.48911 -17.42880 -16.76922 -15.61115 -15.48442 -15.10364 -14.62337 -14.47097 -14.09524 -13.69450 -13.56720 -13.33097 -13.05039 -12.75541 -12.67317 -12.29846 -12.07222 -11.83053 -11.59578 -11.49153 -11.35238 -11.02664 -10.89171 -10.73622 -10.65058 -10.22174 -10.03193 -9.92672 -9.60784 -9.50615 -9.39658 -9.17178 -8.46759 -8.39539 -6.62214 -5.82053 -3.30594 2.43398 2.91338 3.31550 3.40612 3.49927 3.52699 3.73108 4.30134 4.34759 4.50702 4.76626 5.00588 5.20626 5.33560 5.38321 5.43417 5.50214 5.74320 5.90578 5.93502 6.07024 6.18650 6.26501 6.38986 6.49026 6.55932 6.63998 6.67706 6.69998 6.85043 6.89754 6.93201 7.04660 7.17970 7.51694 7.60872 7.84421 8.09748 8.19684 8.48993 8.64841 9.22092 9.83491 10.39341 11.24603 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.006639 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.454422 B = 4216.578941 C = 5125.683508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.261 4.261 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.292 1.292 12 C 0.175 3.825 13 H 0.100 0.900 14 C -0.143 4.143 15 C 0.101 3.899 16 N -0.689 5.689 17 C 0.522 3.478 18 O -0.553 6.553 19 C -0.152 4.152 20 H 0.130 0.870 21 C -0.118 4.118 22 C 0.102 3.898 23 N -0.732 5.732 24 C 0.528 3.472 25 O -0.510 6.510 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.253 0.747 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.418 0.582 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 1.353 6.862 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.303 5.303 4 C -0.390 4.390 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.219 1.219 12 C 0.068 3.932 13 H 0.118 0.882 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.339 5.339 17 C 0.306 3.694 18 O -0.433 6.433 19 C -0.176 4.176 20 H 0.148 0.852 21 C -0.156 4.156 22 C -0.023 4.023 23 N -0.388 5.388 24 C 0.312 3.688 25 O -0.384 6.384 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.256 0.744 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.168 1.238 7.147 15.033 hybrid contribution 0.037 1.260 -1.104 1.676 sum -13.131 2.497 6.043 14.669 Atomic orbital electron populations 1.22462 1.00182 0.98950 1.01479 1.20753 0.91645 0.87474 0.98737 1.43874 1.75972 1.08222 1.02257 1.19102 1.08495 1.18135 0.93307 0.91827 1.25124 0.94509 1.01181 0.97870 1.70012 1.07925 1.35910 1.39655 0.86323 0.77426 0.81814 0.81813 1.20088 1.21464 1.21872 1.20505 0.88840 0.99663 0.84221 0.88213 1.22016 1.01144 0.97882 0.99215 1.22222 0.88183 0.96190 0.95821 1.46026 1.10552 1.57816 1.19534 1.19625 0.83614 0.79893 0.86316 1.90638 1.82952 1.51498 1.18205 1.22152 0.96834 0.95770 1.02889 0.85208 1.22567 0.95724 0.97886 0.99430 1.22089 0.95855 0.91370 0.92948 1.46146 1.50406 1.09623 1.32673 1.20368 0.79206 0.88121 0.81115 1.90857 1.36176 1.79194 1.32144 0.94832 0.93106 0.93388 0.94063 0.94523 0.93680 0.90247 0.94888 0.95142 0.92979 0.92610 0.74427 0.89569 0.87339 0.90193 0.90598 0.75022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.87 37.16 0.37 -2.72 16 2 C 0.14 2.87 5.67 -4.04 -0.02 2.84 16 3 N -0.58 -13.44 1.85 -165.66 -0.31 -13.75 16 4 C -0.26 -6.75 9.26 -15.06 -0.14 -6.89 16 5 H 0.06 1.67 7.89 -52.48 -0.41 1.25 16 6 C 0.01 0.35 4.85 -17.43 -0.08 0.27 16 7 N -0.89 -24.57 10.61 55.49 0.59 -23.98 16 8 Si 0.90 21.78 29.59 -169.99 -5.03 16.76 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 C 0.18 3.88 1.92 -67.93 -0.13 3.75 16 13 H 0.10 2.56 6.04 -51.93 -0.31 2.24 16 14 C -0.14 -2.98 9.05 37.16 0.34 -2.65 16 15 C 0.10 1.99 4.34 -4.04 -0.02 1.98 16 16 N -0.69 -13.12 3.97 -60.29 -0.24 -13.36 16 17 C 0.52 8.98 6.92 -10.98 -0.08 8.90 16 18 O -0.55 -10.39 15.47 5.56 0.09 -10.31 16 19 C -0.15 -2.08 3.33 -91.78 -0.31 -2.39 16 20 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 21 C -0.12 -1.17 6.50 -25.10 -0.16 -1.33 16 22 C 0.10 0.91 7.78 -3.13 -0.02 0.88 16 23 N -0.73 -8.26 6.24 -59.20 -0.37 -8.63 16 24 C 0.53 8.06 7.72 -10.86 -0.08 7.98 16 25 O -0.51 -10.05 18.03 5.56 0.10 -9.95 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.93 4.99 -51.93 -0.26 0.67 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 30 H 0.04 0.72 6.45 -51.93 -0.33 0.38 16 31 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.08 1.88 7.40 -51.93 -0.38 1.49 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.09 7.05 -51.93 -0.37 0.73 16 37 H 0.42 8.70 7.90 -40.82 -0.32 8.38 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.11 1.15 6.96 -51.93 -0.36 0.79 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.41 3.89 8.96 -40.82 -0.37 3.52 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -30.65 336.11 -6.85 -37.50 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.40 Total: 10.03 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -0.34 Total: 10.62 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.33 Total: -59.71 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.19 Total: -20.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.65 -6.85 -37.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154601521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.864 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds