Wall clock time and date at job start Tue Mar 31 2020 02:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47139 * 2 1 4 4 C 1.36930 * 120.00220 * 275.72850 * 3 2 1 5 5 H 1.08003 * 119.99683 * 33.27271 * 4 3 2 6 6 C 1.38812 * 120.00630 * 213.26857 * 4 3 2 7 7 N 1.31618 * 119.99489 * 17.27893 * 6 4 3 8 8 Si 1.86797 * 120.00354 * 197.27424 * 6 4 3 9 9 H 1.48504 * 109.46987 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46894 * 120.00183 * 8 6 4 11 11 H 1.48499 * 109.47118 * 240.00086 * 8 6 4 12 12 C 1.46504 * 119.99756 * 95.73155 * 3 2 1 13 13 H 1.09003 * 109.46532 * 180.08306 * 12 3 2 14 14 C 1.53001 * 109.47591 * 60.08175 * 12 3 2 15 15 C 1.53002 * 109.47088 * 300.07964 * 12 3 2 16 16 N 1.46497 * 109.47202 * 305.00256 * 15 12 3 17 17 C 1.34777 * 120.00192 * 180.02562 * 16 15 12 18 18 O 1.21277 * 119.99902 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00135 * 180.02562 * 17 16 15 20 20 H 1.08993 * 110.43347 * 57.45589 * 19 17 16 21 21 C 1.54627 * 110.48484 * 179.97438 * 19 17 16 22 22 C 1.54477 * 101.76336 * 93.88005 * 21 19 17 23 23 N 1.46755 * 105.47618 * 25.41479 * 22 21 19 24 24 C 1.34423 * 111.30378 * 342.98362 * 23 22 21 25 25 O 1.21277 * 124.94675 * 180.44305 * 24 23 22 26 26 H 1.09003 * 109.46640 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47091 * 300.00391 * 1 2 3 28 28 H 1.08994 * 109.46734 * 60.00471 * 1 2 3 29 29 H 1.08995 * 109.47821 * 239.99502 * 2 1 3 30 30 H 1.09000 * 109.47042 * 119.99766 * 2 1 3 31 31 H 0.97004 * 120.00168 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.46760 * 59.99548 * 14 12 3 33 33 H 1.08991 * 109.47395 * 179.97438 * 14 12 3 34 34 H 1.09001 * 109.46567 * 300.00250 * 14 12 3 35 35 H 1.09002 * 109.46874 * 185.00704 * 15 12 3 36 36 H 1.09002 * 109.47159 * 65.00319 * 15 12 3 37 37 H 0.97006 * 120.00126 * 0.02562 * 16 15 12 38 38 H 1.08998 * 110.96617 * 211.99826 * 21 19 17 39 39 H 1.09002 * 110.97022 * 335.72732 * 21 19 17 40 40 H 1.09005 * 110.24888 * 144.41475 * 22 21 19 41 41 H 1.09005 * 110.24693 * 266.32608 * 22 21 19 42 42 H 0.97001 * 124.35434 * 162.98596 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0662 -1.1799 5 1 1.4370 1.8810 -1.9830 6 6 3.1502 2.9987 -1.3438 7 7 4.1872 2.9917 -0.5334 8 14 3.0445 4.2632 -2.7146 9 1 1.7882 4.0599 -3.4799 10 1 3.0524 5.6284 -2.1304 11 1 4.2088 4.1069 -3.6231 12 6 2.3820 2.0296 1.2624 13 1 2.7190 3.0471 1.0643 14 6 3.5076 1.2412 1.9351 15 6 1.1629 2.0669 2.1862 16 7 0.0466 2.7175 1.4957 17 6 -1.1387 2.8642 2.1202 18 8 -1.2813 2.4572 3.2537 19 6 -2.2871 3.5330 1.4096 20 1 -2.5164 3.0102 0.4811 21 6 -3.5333 3.5834 2.3236 22 6 -3.3923 4.9786 2.9717 23 7 -2.6031 5.7730 2.0231 24 6 -1.9673 4.9864 1.1378 25 8 -1.2422 5.3839 0.2506 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8900 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.8965 3.6435 -0.6476 32 1 4.3761 1.2146 1.2769 33 1 3.7784 1.7238 2.8740 34 1 3.1705 0.2237 2.1330 35 1 1.4079 2.6270 3.0886 36 1 0.8799 1.0493 2.4557 37 1 0.1606 3.0428 0.5889 38 1 -4.4499 3.5164 1.7375 39 1 -3.4963 2.7970 3.0775 40 1 -4.3745 5.4290 3.1152 41 1 -2.8708 4.9004 3.9257 42 1 -2.5474 6.7414 2.0336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154601521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:08 Heat of formation + Delta-G solvation = -75.255175 kcal Electronic energy + Delta-G solvation = -24083.968838 eV Core-core repulsion = 20677.612408 eV Total energy + Delta-G solvation = -3406.356430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.95358 -40.04288 -38.60890 -37.35599 -35.23541 -33.73033 -32.96399 -32.25439 -29.95201 -29.03602 -26.83888 -25.79459 -23.55332 -23.05808 -22.45268 -21.07739 -20.70785 -18.93876 -18.50678 -18.39132 -17.13867 -16.80189 -16.63034 -16.20086 -15.98411 -15.44097 -15.23430 -14.72773 -14.63728 -14.43126 -14.30983 -13.96816 -13.82201 -13.56991 -13.49217 -13.16795 -12.84810 -12.72907 -12.56061 -12.50685 -12.32457 -12.24507 -12.06271 -11.87454 -11.36267 -11.20213 -11.15995 -10.87829 -10.45020 -10.12743 -9.93599 -8.53813 -7.84610 -5.33135 1.20937 1.43225 1.50187 1.56290 1.61988 2.29330 2.46165 2.52362 3.29568 3.31124 3.44989 3.63928 3.77830 4.06905 4.22138 4.27944 4.47132 4.52283 4.56696 4.67299 4.75923 4.81394 4.87504 4.92850 4.98205 5.03773 5.06928 5.15055 5.22552 5.34122 5.49228 5.60702 5.68728 5.73832 5.75731 5.87575 5.92169 6.48409 6.62200 7.12150 7.18862 7.24229 7.92744 8.42562 9.19078 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.006639 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.454422 B = 4216.578941 C = 5125.683508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.255 4.255 5 H 0.059 0.941 6 C -0.030 4.030 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.272 1.272 10 H -0.300 1.300 11 H -0.292 1.292 12 C 0.179 3.821 13 H 0.062 0.938 14 C -0.133 4.133 15 C 0.115 3.885 16 N -0.698 5.698 17 C 0.522 3.478 18 O -0.567 6.567 19 C -0.151 4.151 20 H 0.140 0.860 21 C -0.109 4.109 22 C 0.099 3.901 23 N -0.717 5.717 24 C 0.519 3.481 25 O -0.566 6.566 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.247 0.753 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.409 0.591 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.071 0.929 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.220 0.925 7.831 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.385 4.385 5 H 0.076 0.924 6 C -0.228 4.228 7 N -0.558 5.558 8 Si 0.775 3.225 9 H -0.197 1.197 10 H -0.228 1.228 11 H -0.219 1.219 12 C 0.072 3.928 13 H 0.080 0.920 14 C -0.193 4.193 15 C -0.011 4.011 16 N -0.347 5.347 17 C 0.308 3.692 18 O -0.448 6.448 19 C -0.176 4.176 20 H 0.157 0.843 21 C -0.147 4.147 22 C -0.024 4.024 23 N -0.372 5.372 24 C 0.304 3.696 25 O -0.445 6.445 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.245 0.755 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.090 0.910 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -15.790 0.800 8.165 17.794 hybrid contribution 0.772 1.363 -1.332 2.056 sum -15.018 2.164 6.833 16.641 Atomic orbital electron populations 1.22270 0.97979 1.00486 1.00842 1.20866 0.93206 0.85883 0.98816 1.43975 1.76132 1.09332 1.01790 1.19225 1.07522 1.17849 0.93948 0.92380 1.25609 0.94750 1.02785 0.99632 1.70120 1.08384 1.36367 1.40918 0.85560 0.77270 0.79619 0.80076 1.19659 1.22776 1.21945 1.20354 0.90224 0.97755 0.84489 0.91973 1.21865 0.99433 0.98885 0.99069 1.21931 0.87548 0.96584 0.95011 1.46082 1.11210 1.58290 1.19138 1.20135 0.83681 0.79290 0.86125 1.90626 1.83245 1.52096 1.18841 1.22213 0.96899 0.94500 1.03953 0.84262 1.22670 0.94965 0.98207 0.98868 1.22351 0.97454 0.90871 0.91741 1.46192 1.49128 1.10243 1.31619 1.20668 0.78831 0.89113 0.80996 1.90826 1.38775 1.80145 1.34706 0.92150 0.93339 0.94358 0.95013 0.93375 0.94336 0.93389 0.93200 0.93441 0.92927 0.92039 0.75509 0.86227 0.87746 0.85893 0.91038 0.73972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 9.87 71.98 0.71 -4.64 16 2 C 0.14 5.48 5.67 86.38 0.49 5.97 16 3 N -0.59 -27.34 1.85 -678.02 -1.25 -28.60 16 4 C -0.25 -13.36 9.26 84.03 0.78 -12.58 16 5 H 0.06 3.07 7.89 -2.91 -0.02 3.05 16 6 C -0.03 -1.66 4.85 84.86 0.41 -1.24 16 7 N -0.91 -51.69 10.61 21.65 0.23 -51.46 16 8 Si 0.94 45.86 29.59 68.60 2.03 47.89 16 9 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 12 C 0.18 7.99 1.92 44.99 0.09 8.07 16 13 H 0.06 3.28 6.04 -2.39 -0.01 3.27 16 14 C -0.13 -5.53 9.05 71.98 0.65 -4.87 16 15 C 0.11 4.46 4.34 86.38 0.37 4.83 16 16 N -0.70 -26.37 3.97 -463.06 -1.84 -28.21 16 17 C 0.52 17.34 6.92 87.66 0.61 17.95 16 18 O -0.57 -20.36 15.47 -3.02 -0.05 -20.41 16 19 C -0.15 -3.87 3.33 -11.54 -0.04 -3.91 16 20 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 21 C -0.11 -1.78 6.50 31.65 0.21 -1.57 16 22 C 0.10 1.41 7.78 86.83 0.68 2.08 16 23 N -0.72 -14.60 6.24 -459.81 -2.87 -17.47 16 24 C 0.52 15.36 7.72 87.90 0.68 16.03 16 25 O -0.57 -22.62 18.03 -3.02 -0.05 -22.67 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.68 4.99 -2.39 -0.01 1.67 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.03 1.31 8.09 -2.39 -0.02 1.29 16 30 H 0.05 1.80 6.45 -2.39 -0.02 1.78 16 31 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 32 H 0.05 2.29 7.40 -2.38 -0.02 2.27 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.76 6.67 -2.39 -0.02 1.75 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 2.32 7.05 -2.39 -0.02 2.30 16 37 H 0.41 17.24 7.90 -92.70 -0.73 16.51 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.87 6.96 -2.39 -0.02 1.86 16 40 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.42 7.11 8.96 -92.71 -0.83 6.28 16 Total: -1.00 -67.72 336.11 1.31 -66.41 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.52 Total: 28.40 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 5.63 Total: 26.11 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.73 Total: -125.73 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.10 Total: -43.08 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -67.72 1.31 -66.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154601521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.849 kcal (2) G-P(sol) polarization free energy of solvation -67.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds