Wall clock time and date at job start Tue Mar 31 2020 02:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46492 * 109.47324 * 2 1 4 4 C 1.36936 * 120.00476 * 85.64002 * 3 2 1 5 5 H 1.08009 * 119.99719 * 32.46287 * 4 3 2 6 6 C 1.38812 * 120.00530 * 212.47432 * 4 3 2 7 7 N 1.31619 * 119.99496 * 17.74531 * 6 4 3 8 8 Si 1.86794 * 120.00052 * 197.74921 * 6 4 3 9 9 H 1.48501 * 109.47519 * 359.97438 * 8 6 4 10 10 H 1.48508 * 109.47018 * 119.99340 * 8 6 4 11 11 H 1.48501 * 109.47162 * 239.99367 * 8 6 4 12 12 C 1.46501 * 119.99852 * 265.63515 * 3 2 1 13 13 H 1.09001 * 109.47175 * 184.09549 * 12 3 2 14 14 C 1.52998 * 109.47204 * 64.09359 * 12 3 2 15 15 C 1.53001 * 109.47492 * 304.09411 * 12 3 2 16 16 N 1.46507 * 109.46752 * 304.99961 * 15 12 3 17 17 C 1.34782 * 119.99493 * 179.97438 * 16 15 12 18 18 O 1.21275 * 120.00215 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99592 * 180.02562 * 17 16 15 20 20 H 1.09003 * 115.54918 * 11.75869 * 19 17 16 21 21 C 1.52999 * 117.49641 * 157.42803 * 19 17 16 22 22 C 1.52998 * 60.00093 * 107.48991 * 21 19 17 23 23 H 1.09003 * 117.49959 * 107.48679 * 22 21 19 24 24 C 1.50700 * 117.49686 * 252.51240 * 22 21 19 25 25 N 1.34777 * 120.00086 * 136.51475 * 24 22 21 26 26 O 1.21278 * 119.99778 * 316.50814 * 24 22 21 27 27 H 1.09001 * 109.46641 * 300.00471 * 1 2 3 28 28 H 1.08999 * 109.47004 * 59.99375 * 1 2 3 29 29 H 1.08994 * 109.47766 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46641 * 239.99529 * 2 1 3 31 31 H 1.09004 * 109.46618 * 120.00400 * 2 1 3 32 32 H 0.97004 * 119.99819 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47210 * 300.00170 * 14 12 3 34 34 H 1.09008 * 109.47128 * 60.00139 * 14 12 3 35 35 H 1.09002 * 109.47379 * 179.97438 * 14 12 3 36 36 H 1.09001 * 109.47020 * 64.99816 * 15 12 3 37 37 H 1.08995 * 109.47417 * 185.00237 * 15 12 3 38 38 H 0.96992 * 120.00341 * 0.02562 * 16 15 12 39 39 H 1.09000 * 117.49477 * 214.98089 * 21 19 17 40 40 H 1.08997 * 117.49850 * 359.97438 * 21 19 17 41 41 H 0.97001 * 119.99841 * 359.97438 * 25 24 22 42 42 H 0.97007 * 119.99965 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1616 2.0568 1.1824 5 1 2.4340 1.5220 2.0804 6 6 1.9567 3.4290 1.2271 7 7 1.2996 4.0280 0.2566 8 14 2.6133 4.4251 2.6643 9 1 3.3097 3.5220 3.6155 10 1 3.5669 5.4475 2.1634 11 1 1.4850 5.0978 3.3569 12 6 2.3536 2.0395 -1.2651 13 1 2.7649 3.0283 -1.0622 14 6 1.0912 2.1774 -2.1184 15 6 3.3888 1.2012 -2.0177 16 7 4.5496 0.9687 -1.1547 17 6 5.5940 0.2484 -1.6097 18 8 5.5731 -0.2067 -2.7336 19 6 6.7879 0.0087 -0.7218 20 1 6.6538 0.2720 0.3275 21 6 7.6740 -1.1973 -1.0398 22 6 8.1753 0.2184 -1.3316 23 1 8.9544 0.6200 -0.6836 24 6 8.2435 0.6489 -2.7742 25 7 7.8141 1.8752 -3.1325 26 8 8.6848 -0.1080 -3.6126 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.1567 4.9870 0.2876 33 1 0.6799 1.1886 -2.3213 34 1 0.3536 2.7748 -1.5822 35 1 1.3405 2.6677 -3.0595 36 1 2.9473 0.2450 -2.2984 37 1 3.7042 1.7333 -2.9152 38 1 4.5662 1.3323 -0.2557 39 1 8.1232 -1.7272 -0.1998 40 1 7.3932 -1.8176 -1.8910 41 1 7.4608 2.4805 -2.4619 42 1 7.8576 2.1521 -4.0612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155268948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:02 Heat of formation + Delta-G solvation = -58.125622 kcal Electronic energy + Delta-G solvation = -23489.554201 eV Core-core repulsion = 20083.940564 eV Total energy + Delta-G solvation = -3405.613637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47867 -39.98602 -38.62984 -36.84263 -35.25745 -34.52117 -33.68921 -32.42841 -30.10207 -27.78769 -25.92429 -25.59924 -24.22174 -23.23653 -21.50314 -21.09339 -20.54682 -19.02634 -18.56681 -17.90412 -17.34824 -16.89485 -16.53746 -16.37156 -16.15661 -15.52678 -15.33979 -15.04736 -14.69593 -14.36377 -14.13619 -13.97648 -13.63605 -13.25455 -13.08247 -12.98500 -12.97114 -12.78979 -12.61278 -12.17703 -12.02272 -11.74448 -11.72627 -11.56119 -11.25221 -11.20320 -11.06805 -10.80423 -10.65436 -10.43569 -9.88233 -8.52364 -7.77889 -5.25749 1.34456 1.52196 1.59059 1.65306 1.74631 2.25849 2.58135 2.60025 2.89807 3.37722 3.63992 3.65927 3.77249 3.90981 4.08595 4.27209 4.36469 4.47888 4.54180 4.72550 4.79871 4.84722 4.87076 4.90287 4.92897 5.05554 5.11178 5.12328 5.18517 5.35563 5.57687 5.61041 5.77111 5.79524 5.85824 5.95494 6.41316 6.53472 6.75725 7.28078 7.31751 7.37230 7.96033 8.48745 9.26861 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.005150 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.860642 B = 5435.357691 C = 6001.349427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 N -0.588 5.588 4 C -0.258 4.258 5 H 0.065 0.935 6 C -0.031 4.031 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.292 1.292 11 H -0.306 1.306 12 C 0.190 3.810 13 H 0.070 0.930 14 C -0.137 4.137 15 C 0.117 3.883 16 N -0.693 5.693 17 C 0.524 3.476 18 O -0.586 6.586 19 C -0.172 4.172 20 H 0.164 0.836 21 C -0.115 4.115 22 C -0.154 4.154 23 H 0.182 0.818 24 C 0.547 3.453 25 N -0.836 5.836 26 O -0.591 6.591 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.246 0.754 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.413 0.587 39 H 0.151 0.849 40 H 0.078 0.922 41 H 0.412 0.588 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 -3.684 0.832 10.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 N -0.310 5.310 4 C -0.388 4.388 5 H 0.082 0.918 6 C -0.229 4.229 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.190 1.190 10 H -0.218 1.218 11 H -0.235 1.235 12 C 0.083 3.917 13 H 0.088 0.912 14 C -0.197 4.197 15 C -0.009 4.009 16 N -0.342 5.342 17 C 0.312 3.688 18 O -0.467 6.467 19 C -0.193 4.193 20 H 0.181 0.819 21 C -0.153 4.153 22 C -0.175 4.175 23 H 0.199 0.801 24 C 0.333 3.667 25 N -0.398 5.398 26 O -0.472 6.472 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.250 0.750 39 H 0.169 0.831 40 H 0.097 0.903 41 H 0.242 0.758 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.358 -4.428 -0.342 11.269 hybrid contribution -0.621 1.516 0.741 1.798 sum 9.737 -2.911 0.399 10.170 Atomic orbital electron populations 1.22287 0.99373 0.99672 1.00435 1.20865 0.92179 0.86636 0.98702 1.44067 1.74474 1.10277 1.02182 1.19327 1.40106 0.90276 0.89087 0.91775 1.25674 0.98729 0.99258 0.99206 1.70157 1.41707 1.08998 1.35111 0.85463 0.77267 0.78911 0.80181 1.19004 1.21839 1.23451 1.20254 0.91639 0.94969 0.84870 0.91219 1.22033 0.99756 0.99626 0.98267 1.21782 0.86737 0.99390 0.93020 1.45804 1.16830 1.52802 1.18785 1.20165 0.84111 0.77716 0.86854 1.90713 1.81767 1.52359 1.21899 1.22472 0.88198 1.07103 1.01517 0.81866 1.23074 0.98716 0.89432 1.04036 1.22406 0.98013 1.03520 0.93593 0.80116 1.20028 0.75211 0.81305 0.90191 1.43690 1.65594 1.16421 1.14054 1.90685 1.48562 1.54047 1.53876 0.95176 0.94106 0.92562 0.93697 0.93962 0.94421 0.94317 0.92810 0.93986 0.93619 0.92836 0.74971 0.83074 0.90300 0.75818 0.76578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 10.02 71.98 0.72 -5.09 16 2 C 0.14 5.32 5.78 86.38 0.50 5.82 16 3 N -0.59 -24.55 1.82 -678.04 -1.23 -25.78 16 4 C -0.26 -11.92 9.51 84.03 0.80 -11.12 16 5 H 0.06 2.96 7.89 -2.91 -0.02 2.93 16 6 C -0.03 -1.51 4.83 84.86 0.41 -1.10 16 7 N -0.92 -47.14 10.24 21.65 0.22 -46.92 16 8 Si 0.95 39.58 29.59 68.60 2.03 41.61 16 9 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 10 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.31 -13.47 7.11 99.48 0.71 -12.77 16 12 C 0.19 7.63 1.93 44.99 0.09 7.72 16 13 H 0.07 3.20 6.21 -2.39 -0.01 3.19 16 14 C -0.14 -5.50 8.25 71.98 0.59 -4.91 16 15 C 0.12 4.13 4.84 86.38 0.42 4.55 16 16 N -0.69 -21.65 5.39 -463.04 -2.50 -24.14 16 17 C 0.52 15.97 6.97 87.66 0.61 16.59 16 18 O -0.59 -22.70 15.14 -3.02 -0.05 -22.75 16 19 C -0.17 -3.62 6.19 -11.54 -0.07 -3.70 16 20 H 0.16 2.42 8.14 -2.39 -0.02 2.40 16 21 C -0.11 -2.38 9.65 30.59 0.30 -2.08 16 22 C -0.15 -3.06 6.14 -11.54 -0.07 -3.13 16 23 H 0.18 2.05 8.14 -2.39 -0.02 2.03 16 24 C 0.55 15.24 5.82 87.66 0.51 15.75 16 25 N -0.84 -18.44 8.68 -173.53 -1.51 -19.95 16 26 O -0.59 -22.17 17.81 -3.02 -0.05 -22.23 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.56 5.88 -2.39 -0.01 1.54 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.61 6.32 -2.39 -0.02 1.60 16 31 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 32 H 0.25 12.62 8.31 -92.71 -0.77 11.85 16 33 H 0.04 1.45 6.38 -2.39 -0.02 1.43 16 34 H 0.05 2.50 6.98 -2.38 -0.02 2.49 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.70 6.75 -2.39 -0.02 1.69 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 12.70 8.11 -92.71 -0.75 11.95 16 39 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 2.23 7.85 -2.39 -0.02 2.21 16 41 H 0.41 7.18 8.83 -92.71 -0.82 6.36 16 42 H 0.40 8.51 8.93 -92.70 -0.83 7.68 16 Total: -1.00 -66.10 343.41 0.38 -65.72 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -1.34 Total: 35.14 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 4.80 Total: 19.29 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -5.01 Total: -116.79 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.10 Total: -44.97 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -66.10 0.38 -65.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155268948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.593 kcal (2) G-P(sol) polarization free energy of solvation -66.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds