Wall clock time and date at job start Tue Mar 31 2020 02:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36942 * 120.00017 * 88.25157 * 3 2 1 5 5 H 1.07999 * 119.99770 * 210.58133 * 4 3 2 6 6 C 1.38807 * 119.99924 * 30.59051 * 4 3 2 7 7 N 1.31621 * 120.00534 * 38.79944 * 6 4 3 8 8 Si 1.86802 * 119.99685 * 218.80665 * 6 4 3 9 9 H 1.48500 * 109.46932 * 269.99666 * 8 6 4 10 10 H 1.48502 * 109.47353 * 29.99614 * 8 6 4 11 11 H 1.48499 * 109.47060 * 149.99865 * 8 6 4 12 12 C 1.46502 * 120.00349 * 268.24690 * 3 2 1 13 13 H 1.08993 * 109.47631 * 180.02562 * 12 3 2 14 14 C 1.53007 * 109.46882 * 60.00197 * 12 3 2 15 15 C 1.52995 * 109.47037 * 300.00519 * 12 3 2 16 16 N 1.46500 * 109.47399 * 304.99522 * 15 12 3 17 17 C 1.34773 * 120.00257 * 180.02562 * 16 15 12 18 18 O 1.21284 * 120.00059 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99968 * 180.02562 * 17 16 15 20 20 H 1.08996 * 110.21860 * 40.69704 * 19 17 16 21 21 C 1.54478 * 110.24301 * 278.76698 * 19 17 16 22 22 C 1.54849 * 101.66459 * 266.39140 * 21 19 17 23 23 C 1.51281 * 104.20919 * 335.19158 * 22 21 19 24 24 O 1.21281 * 124.94237 * 196.28388 * 23 22 21 25 25 N 1.34418 * 110.11510 * 16.26763 * 23 22 21 26 26 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 27 27 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 29 29 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 30 30 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 31 31 H 0.97000 * 119.99257 * 5.85637 * 7 6 4 32 32 H 1.08993 * 109.46915 * 300.00349 * 14 12 3 33 33 H 1.08998 * 109.46908 * 59.99788 * 14 12 3 34 34 H 1.08998 * 109.47121 * 180.02562 * 14 12 3 35 35 H 1.08999 * 109.47479 * 64.99653 * 15 12 3 36 36 H 1.09004 * 109.47309 * 184.99597 * 15 12 3 37 37 H 0.96998 * 119.99804 * 0.02562 * 16 15 12 38 38 H 1.09004 * 110.96766 * 24.53917 * 21 19 17 39 39 H 1.09006 * 110.96740 * 148.29661 * 21 19 17 40 40 H 1.08999 * 110.47209 * 216.51944 * 22 21 19 41 41 H 1.08998 * 110.60597 * 93.93689 * 22 21 19 42 42 H 0.96995 * 124.35527 * 180.42462 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2123 2.0389 1.1854 5 1 2.0843 3.1101 1.2358 6 6 2.5736 1.3287 2.3220 7 7 3.4226 0.3271 2.2301 8 14 1.8547 1.7944 3.9821 9 1 2.7293 2.8011 4.6353 10 1 0.4979 2.3670 3.7910 11 1 1.7655 0.5853 4.8396 12 6 2.2989 2.0590 -1.2681 13 1 2.6507 3.0712 -1.0690 14 6 1.0215 2.1185 -2.1082 15 6 3.3761 1.2862 -2.0318 16 7 4.5579 1.1259 -1.1812 17 6 5.6404 0.4725 -1.6476 18 8 5.6360 0.0167 -2.7716 19 6 6.8560 0.3071 -0.7723 20 1 6.5556 0.0765 0.2498 21 6 7.7137 1.5915 -0.8005 22 6 8.7259 1.2674 -1.9266 23 6 8.7759 -0.2443 -1.9572 24 8 9.6421 -0.8999 -2.4964 25 7 7.7208 -0.7551 -1.2994 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8606 0.1387 1.3854 32 1 0.6701 1.1062 -2.3073 33 1 0.2541 2.6690 -1.5641 34 1 1.2305 2.6224 -3.0519 35 1 2.9917 0.3045 -2.3085 36 1 3.6486 1.8366 -2.9324 37 1 4.5614 1.4901 -0.2821 38 1 7.1072 2.4600 -1.0575 39 1 8.2233 1.7413 0.1514 40 1 9.7073 1.6766 -1.6866 41 1 8.3745 1.6568 -2.8821 42 1 7.5527 -1.7037 -1.1873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156470969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:00 Heat of formation + Delta-G solvation = -77.886274 kcal Electronic energy + Delta-G solvation = -23641.112075 eV Core-core repulsion = 20234.641552 eV Total energy + Delta-G solvation = -3406.470523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88898 -40.17628 -38.77131 -37.21653 -35.56410 -34.01417 -32.41348 -32.17607 -30.10974 -29.52792 -26.86254 -25.57332 -23.74391 -23.45045 -21.70405 -21.25623 -20.88883 -19.33549 -18.64391 -18.46517 -17.16407 -17.09004 -16.52730 -16.01581 -15.83407 -15.49280 -15.46878 -14.88582 -14.70582 -14.65189 -14.30326 -14.13000 -13.69764 -13.62080 -13.42848 -13.25314 -13.12592 -12.58105 -12.49535 -12.48608 -12.27472 -12.11713 -11.97596 -11.85978 -11.41651 -11.37898 -11.26954 -11.05786 -10.22673 -10.13977 -9.98990 -8.81242 -8.14700 -5.23792 1.39427 1.53897 1.65703 1.72638 1.89213 2.05403 2.50885 2.70084 3.19582 3.27951 3.45232 3.57287 3.73150 3.89750 4.03032 4.19396 4.30924 4.41763 4.43310 4.57372 4.68958 4.73289 4.76102 4.81688 4.85871 4.88304 4.98995 5.01935 5.09673 5.25880 5.35713 5.40800 5.54689 5.62525 5.62677 5.88971 6.11262 6.51931 6.60668 7.08425 7.15801 7.23291 7.89093 8.37543 9.05252 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.005278 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.622459 B = 5303.938617 C = 6182.358385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 N -0.589 5.589 4 C -0.364 4.364 5 H 0.041 0.959 6 C -0.040 4.040 7 N -0.906 5.906 8 Si 1.082 2.918 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.299 1.299 12 C 0.156 3.844 13 H 0.069 0.931 14 C -0.149 4.149 15 C 0.111 3.889 16 N -0.697 5.697 17 C 0.496 3.504 18 O -0.584 6.584 19 C 0.113 3.887 20 H 0.126 0.874 21 C -0.108 4.108 22 C -0.148 4.148 23 C 0.518 3.482 24 O -0.584 6.584 25 N -0.704 5.704 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.412 0.588 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 5.096 -3.959 7.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.014 3.986 3 N -0.312 5.312 4 C -0.493 4.493 5 H 0.059 0.941 6 C -0.243 4.243 7 N -0.545 5.545 8 Si 0.911 3.089 9 H -0.211 1.211 10 H -0.216 1.216 11 H -0.225 1.225 12 C 0.049 3.951 13 H 0.087 0.913 14 C -0.208 4.208 15 C -0.015 4.015 16 N -0.348 5.348 17 C 0.281 3.719 18 O -0.465 6.465 19 C 0.003 3.997 20 H 0.144 0.856 21 C -0.146 4.146 22 C -0.188 4.188 23 C 0.306 3.694 24 O -0.465 6.465 25 N -0.356 5.356 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.249 0.751 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.124 0.876 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.213 4.161 -3.428 6.276 hybrid contribution -0.420 -0.263 -1.101 1.207 sum 2.792 3.898 -4.528 6.595 Atomic orbital electron populations 1.22257 0.98174 1.00038 1.01142 1.20691 0.92854 0.86484 0.98605 1.44029 1.74533 1.11584 1.01030 1.19728 1.47745 0.93218 0.88629 0.94093 1.26322 0.95996 0.98144 1.03797 1.70891 1.21303 1.34466 1.27839 0.83310 0.76194 0.75262 0.74160 1.21132 1.21625 1.22550 1.20865 0.92688 0.95401 0.86187 0.91316 1.22146 0.97602 1.01569 0.99460 1.21861 0.86169 1.00038 0.93461 1.45943 1.13910 1.55889 1.19041 1.21370 0.85213 0.77634 0.87657 1.90667 1.83527 1.50623 1.21640 1.21709 0.89085 0.91014 0.97852 0.85587 1.22713 0.96168 0.94574 1.01115 1.22422 1.03773 0.90820 1.01797 1.21487 0.79908 0.92618 0.75344 1.90700 1.40142 1.68363 1.47260 1.45979 1.24196 1.09475 1.55998 0.92167 0.93176 0.94655 0.95111 0.94273 0.92421 0.93006 0.92914 0.91088 0.93963 0.91417 0.75061 0.87605 0.85767 0.85106 0.87570 0.74894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.68 9.98 71.98 0.72 -4.96 16 2 C 0.14 5.72 5.20 86.38 0.45 6.17 16 3 N -0.59 -23.89 1.72 -678.04 -1.17 -25.06 16 4 C -0.36 -16.85 8.93 84.03 0.75 -16.10 16 5 H 0.04 1.98 8.05 -2.91 -0.02 1.95 16 6 C -0.04 -1.93 4.53 84.86 0.38 -1.55 16 7 N -0.91 -45.46 12.21 21.65 0.26 -45.19 16 8 Si 1.08 45.38 30.05 68.60 2.06 47.44 16 9 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 10 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.30 -13.05 7.11 99.48 0.71 -12.34 16 12 C 0.16 5.24 2.87 44.99 0.13 5.37 16 13 H 0.07 2.35 7.89 -2.39 -0.02 2.33 16 14 C -0.15 -4.26 8.17 71.98 0.59 -3.67 16 15 C 0.11 3.63 4.92 86.38 0.43 4.06 16 16 N -0.70 -22.72 5.39 -463.06 -2.49 -25.21 16 17 C 0.50 15.98 7.00 87.66 0.61 16.60 16 18 O -0.58 -22.92 16.57 -3.04 -0.05 -22.97 16 19 C 0.11 2.85 3.92 44.70 0.18 3.03 16 20 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 21 C -0.11 -1.96 6.71 31.73 0.21 -1.75 16 22 C -0.15 -3.04 6.86 30.66 0.21 -2.83 16 23 C 0.52 15.36 8.43 87.90 0.74 16.10 16 24 O -0.58 -22.00 18.03 -3.03 -0.05 -22.05 16 25 N -0.70 -19.41 5.46 -442.97 -2.42 -21.83 16 26 H 0.06 1.97 5.63 -2.39 -0.01 1.96 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 1.22 6.53 -2.39 -0.02 1.20 16 30 H 0.04 1.88 5.67 -2.39 -0.01 1.86 16 31 H 0.27 12.95 7.49 -92.71 -0.69 12.26 16 32 H 0.05 1.50 6.30 -2.39 -0.02 1.49 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.52 6.87 -2.39 -0.02 1.51 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.41 14.21 7.36 -92.71 -0.68 13.53 16 38 H 0.11 1.77 7.89 -2.38 -0.02 1.75 16 39 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.11 2.21 8.14 -2.39 -0.02 2.20 16 42 H 0.41 11.09 8.96 -92.71 -0.83 10.26 16 Total: -1.00 -62.63 340.18 1.14 -61.49 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.40 Total: 32.93 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 5.40 Total: 20.46 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -5.81 Total: -117.29 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.11 Total: -45.02 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.06 Total: 47.44 kcal Total: -62.63 1.14 -61.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156470969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.398 kcal (2) G-P(sol) polarization free energy of solvation -62.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds