Wall clock time and date at job start Tue Mar 31 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34414 * 124.34881 * 2 1 4 4 O 1.21283 * 124.94790 * 359.55020 * 3 2 1 5 5 C 1.51287 * 110.11346 * 179.58811 * 3 2 1 6 6 C 1.54625 * 104.19667 * 343.74448 * 5 3 2 7 7 C 1.46825 * 124.33333 * 179.97438 * 2 1 3 8 8 H 1.08998 * 110.23857 * 78.01832 * 7 2 1 9 9 C 1.53001 * 110.28198 * 316.00547 * 7 2 1 10 10 C 1.50699 * 109.47383 * 68.96366 * 9 7 2 11 11 O 1.21283 * 119.99645 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99730 * 180.02562 * 10 9 7 13 13 C 1.46503 * 119.99744 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47177 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47286 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47533 * 179.97438 * 15 14 13 17 17 C 1.36932 * 119.99977 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00373 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99681 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99873 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47205 * 60.00527 * 21 19 17 23 23 H 1.48504 * 109.47234 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47414 * 300.00508 * 21 19 17 25 25 H 1.09000 * 109.46778 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47150 * 119.97558 * 1 2 3 27 27 H 1.08998 * 109.46928 * 239.97491 * 1 2 3 28 28 H 1.09010 * 110.48420 * 225.06755 * 5 3 2 29 29 H 1.09001 * 110.48806 * 102.43078 * 5 3 2 30 30 H 1.09002 * 110.96933 * 142.91876 * 6 5 3 31 31 H 1.09003 * 110.97286 * 266.64443 * 6 5 3 32 32 H 1.09002 * 109.47026 * 188.96787 * 9 7 2 33 33 H 1.09009 * 109.46837 * 308.96154 * 9 7 2 34 34 H 0.96996 * 120.00391 * 0.02562 * 12 10 9 35 35 H 1.09004 * 109.46613 * 299.99981 * 13 12 10 36 36 H 1.08999 * 109.47469 * 59.99171 * 13 12 10 37 37 H 1.09004 * 109.47408 * 299.99585 * 14 13 12 38 38 H 1.09001 * 109.47278 * 60.00033 * 14 13 12 39 39 H 1.09002 * 109.47457 * 300.00198 * 15 14 13 40 40 H 1.09009 * 109.47110 * 59.99997 * 15 14 13 41 41 H 0.97000 * 119.99476 * 0.02562 * 16 15 14 42 42 H 0.96998 * 120.00220 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7947 2.2442 -0.0078 5 6 3.6898 0.7377 0.0102 6 6 3.7010 -0.7487 0.4359 7 6 2.2931 -1.2124 0.0005 8 1 2.3305 -1.6440 -0.9997 9 6 1.7397 -2.2323 0.9978 10 6 0.4225 -2.7637 0.4942 11 8 -0.0293 -2.3656 -0.5586 12 7 -0.2537 -3.6806 1.2142 13 6 -1.5340 -4.1977 0.7243 14 6 -2.0874 -5.2173 1.7216 15 6 -3.4247 -5.7569 1.2103 16 7 -3.9544 -6.7337 2.1650 17 6 -5.1500 -7.3538 1.9178 18 1 -5.7023 -7.1231 1.0189 19 6 -5.6521 -8.2790 2.8227 20 7 -4.9793 -8.5598 3.9185 21 14 -7.2827 -9.1255 2.4852 22 1 -7.1931 -9.8824 1.2108 23 1 -7.5943 -10.0606 3.5960 24 1 -8.3574 -8.1060 2.3808 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5135 -0.8902 27 1 -0.3633 -0.5142 0.8898 28 1 4.2327 1.3459 0.7339 29 1 4.1196 0.8529 -0.9849 30 1 4.4754 -1.3011 -0.0963 31 1 3.8274 -0.8447 1.5143 32 1 2.4462 -3.0552 1.1057 33 1 1.5917 -1.7513 1.9649 34 1 0.1071 -3.9982 2.0566 35 1 -2.2405 -3.3747 0.6156 36 1 -1.3855 -4.6790 -0.2424 37 1 -1.3808 -6.0402 1.8299 38 1 -2.2359 -4.7363 2.6884 39 1 -4.1312 -4.9339 1.1024 40 1 -3.2767 -6.2378 0.2434 41 1 -3.4585 -6.9407 2.9726 42 1 -5.3299 -9.2066 4.5506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163797598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:33 Heat of formation + Delta-G solvation = -62.135355 kcal Electronic energy + Delta-G solvation = -21815.612505 eV Core-core repulsion = 18409.824993 eV Total energy + Delta-G solvation = -3405.787512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07134 -39.56899 -36.92248 -36.04055 -34.44033 -33.00577 -32.24398 -31.35835 -29.49906 -26.77477 -26.23293 -24.74340 -22.66811 -21.79147 -21.29819 -20.51772 -19.46843 -17.65500 -17.21413 -16.82087 -16.74663 -16.15993 -15.81637 -15.28672 -14.75228 -14.63695 -14.29474 -14.01694 -13.72856 -13.33613 -13.18152 -13.09043 -12.91841 -12.71649 -12.62347 -12.46150 -11.90546 -11.68555 -11.57504 -11.45058 -11.01513 -10.93559 -10.82362 -10.65100 -10.16610 -10.03962 -9.94575 -9.72977 -9.13476 -8.91168 -8.86243 -6.97686 -5.80647 -3.09807 2.34741 2.42863 2.81629 2.99504 3.42369 3.46549 3.47692 3.94422 3.98635 4.23928 4.47728 4.55970 4.66399 4.80439 4.86033 4.99215 5.09277 5.20311 5.23744 5.25231 5.30799 5.41763 5.51841 5.53755 5.55474 5.64366 5.81553 5.96804 5.99403 6.13047 6.26551 6.28199 6.39689 6.73169 6.77454 6.93186 7.33737 7.66346 7.95085 8.05480 8.38296 9.49383 10.06008 10.40595 11.42274 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.049177 B = 0.002285 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.232343 B =12250.628617 C =12517.762714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.608 5.608 3 C 0.512 3.488 4 O -0.539 6.539 5 C -0.155 4.155 6 C -0.129 4.129 7 C 0.147 3.853 8 H 0.092 0.908 9 C -0.152 4.152 10 C 0.505 3.495 11 O -0.536 6.536 12 N -0.727 5.727 13 C 0.122 3.878 14 C -0.138 4.138 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.383 0.617 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.050 14.299 -5.334 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.342 5.342 3 C 0.299 3.701 4 O -0.417 6.417 5 C -0.195 4.195 6 C -0.167 4.167 7 C 0.042 3.958 8 H 0.109 0.891 9 C -0.193 4.193 10 C 0.291 3.709 11 O -0.413 6.413 12 N -0.378 5.378 13 C -0.001 4.001 14 C -0.176 4.176 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.217 0.783 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.217 15.114 -6.176 25.986 hybrid contribution -0.677 -0.945 0.671 1.342 sum 19.540 14.169 -5.504 24.756 Atomic orbital electron populations 1.21913 0.77403 1.02225 1.03009 1.48172 1.06936 1.06492 1.72558 1.20908 0.89358 0.84396 0.75411 1.90724 1.78777 1.21158 1.51007 1.22343 0.94913 0.97425 1.04792 1.22716 0.95860 0.95283 1.02857 1.21479 0.89490 0.85134 0.99648 0.89057 1.22059 0.95936 1.00340 1.00973 1.20513 0.86255 0.79209 0.84926 1.90682 1.69715 1.57703 1.23242 1.46113 1.23321 1.43060 1.25290 1.21364 0.83675 0.97097 0.97984 1.21944 0.98975 0.97966 0.98706 1.20518 0.91054 0.92252 0.93350 1.42327 1.23966 1.47666 1.23852 1.19197 0.96744 1.17001 1.04326 0.91140 1.24759 0.99100 1.00180 0.96996 1.69643 1.39353 1.37606 1.11738 0.86234 0.83541 0.79180 0.77036 1.21202 1.21649 1.21204 0.91302 0.89020 0.93119 0.88011 0.87769 0.88766 0.89602 0.87171 0.88200 0.76505 0.91372 0.91315 0.91297 0.91334 0.96090 0.96087 0.78309 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 8.96 59.85 0.54 1.62 16 2 N -0.61 -6.13 3.19 -172.65 -0.55 -6.68 16 3 C 0.51 5.66 8.02 -10.86 -0.09 5.57 16 4 O -0.54 -8.32 17.35 5.55 0.10 -8.23 16 5 C -0.15 -0.95 6.86 -26.74 -0.18 -1.13 16 6 C -0.13 -0.52 6.68 -25.09 -0.17 -0.69 16 7 C 0.15 1.01 3.00 -66.97 -0.20 0.81 16 8 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 9 C -0.15 -0.90 5.04 -27.88 -0.14 -1.04 16 10 C 0.50 4.88 6.26 -10.99 -0.07 4.82 16 11 O -0.54 -6.96 12.02 5.55 0.07 -6.89 16 12 N -0.73 -6.86 5.56 -60.29 -0.33 -7.19 16 13 C 0.12 1.49 5.67 -4.04 -0.02 1.47 16 14 C -0.14 -1.97 5.44 -26.73 -0.15 -2.11 16 15 C 0.16 3.02 6.26 -4.04 -0.03 3.00 16 16 N -0.73 -18.38 5.60 -59.90 -0.34 -18.71 16 17 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 21 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.07 0.83 7.53 -51.93 -0.39 0.44 16 26 H 0.09 1.16 6.03 -51.93 -0.31 0.85 16 27 H 0.05 0.55 6.75 -51.93 -0.35 0.20 16 28 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.25 7.91 -51.93 -0.41 -0.16 16 32 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.40 2.84 8.47 -40.82 -0.35 2.49 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.38 9.97 7.67 -40.82 -0.31 9.65 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -35.37 343.33 -7.67 -43.04 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.73 Total: 4.64 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.75 Total: 4.90 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.50 Total: -59.92 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.16 Total: -15.12 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.37 -7.67 -43.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163797598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.098 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds