Wall clock time and date at job start Tue Mar 31 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34414 * 124.34881 * 2 1 4 4 O 1.21283 * 124.94790 * 359.55020 * 3 2 1 5 5 C 1.51287 * 110.11346 * 179.58811 * 3 2 1 6 6 C 1.54625 * 104.19667 * 343.74448 * 5 3 2 7 7 C 1.46825 * 124.33333 * 179.97438 * 2 1 3 8 8 H 1.08998 * 110.23857 * 78.01832 * 7 2 1 9 9 C 1.53001 * 110.28198 * 316.00547 * 7 2 1 10 10 C 1.50699 * 109.47383 * 68.96366 * 9 7 2 11 11 O 1.21283 * 119.99645 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99730 * 180.02562 * 10 9 7 13 13 C 1.46503 * 119.99744 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47177 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47286 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47533 * 179.97438 * 15 14 13 17 17 C 1.36932 * 119.99977 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00373 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99681 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99873 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47205 * 60.00527 * 21 19 17 23 23 H 1.48504 * 109.47234 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47414 * 300.00508 * 21 19 17 25 25 H 1.09000 * 109.46778 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47150 * 119.97558 * 1 2 3 27 27 H 1.08998 * 109.46928 * 239.97491 * 1 2 3 28 28 H 1.09010 * 110.48420 * 225.06755 * 5 3 2 29 29 H 1.09001 * 110.48806 * 102.43078 * 5 3 2 30 30 H 1.09002 * 110.96933 * 142.91876 * 6 5 3 31 31 H 1.09003 * 110.97286 * 266.64443 * 6 5 3 32 32 H 1.09002 * 109.47026 * 188.96787 * 9 7 2 33 33 H 1.09009 * 109.46837 * 308.96154 * 9 7 2 34 34 H 0.96996 * 120.00391 * 0.02562 * 12 10 9 35 35 H 1.09004 * 109.46613 * 299.99981 * 13 12 10 36 36 H 1.08999 * 109.47469 * 59.99171 * 13 12 10 37 37 H 1.09004 * 109.47408 * 299.99585 * 14 13 12 38 38 H 1.09001 * 109.47278 * 60.00033 * 14 13 12 39 39 H 1.09002 * 109.47457 * 300.00198 * 15 14 13 40 40 H 1.09009 * 109.47110 * 59.99997 * 15 14 13 41 41 H 0.97000 * 119.99476 * 0.02562 * 16 15 14 42 42 H 0.96998 * 120.00220 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7947 2.2442 -0.0078 5 6 3.6898 0.7377 0.0102 6 6 3.7010 -0.7487 0.4359 7 6 2.2931 -1.2124 0.0005 8 1 2.3305 -1.6440 -0.9997 9 6 1.7397 -2.2323 0.9978 10 6 0.4225 -2.7637 0.4942 11 8 -0.0293 -2.3656 -0.5586 12 7 -0.2537 -3.6806 1.2142 13 6 -1.5340 -4.1977 0.7243 14 6 -2.0874 -5.2173 1.7216 15 6 -3.4247 -5.7569 1.2103 16 7 -3.9544 -6.7337 2.1650 17 6 -5.1500 -7.3538 1.9178 18 1 -5.7023 -7.1231 1.0189 19 6 -5.6521 -8.2790 2.8227 20 7 -4.9793 -8.5598 3.9185 21 14 -7.2827 -9.1255 2.4852 22 1 -7.1931 -9.8824 1.2108 23 1 -7.5943 -10.0606 3.5960 24 1 -8.3574 -8.1060 2.3808 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5135 -0.8902 27 1 -0.3633 -0.5142 0.8898 28 1 4.2327 1.3459 0.7339 29 1 4.1196 0.8529 -0.9849 30 1 4.4754 -1.3011 -0.0963 31 1 3.8274 -0.8447 1.5143 32 1 2.4462 -3.0552 1.1057 33 1 1.5917 -1.7513 1.9649 34 1 0.1071 -3.9982 2.0566 35 1 -2.2405 -3.3747 0.6156 36 1 -1.3855 -4.6790 -0.2424 37 1 -1.3808 -6.0402 1.8299 38 1 -2.2359 -4.7363 2.6884 39 1 -4.1312 -4.9339 1.1024 40 1 -3.2767 -6.2378 0.2434 41 1 -3.4585 -6.9407 2.9726 42 1 -5.3299 -9.2066 4.5506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163797598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:33 Heat of formation + Delta-G solvation = -89.163470 kcal Electronic energy + Delta-G solvation = -21816.784532 eV Core-core repulsion = 18409.824993 eV Total energy + Delta-G solvation = -3406.959539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78691 -40.39994 -37.84500 -37.32468 -35.86825 -33.88064 -33.56703 -32.30580 -30.96468 -27.56617 -27.35790 -25.96983 -24.21976 -22.56943 -22.38478 -21.42071 -20.21819 -19.18902 -18.24079 -17.65840 -17.61257 -17.09533 -16.80415 -16.55072 -16.12043 -15.63640 -15.29939 -15.28209 -14.83292 -14.61610 -14.55540 -13.89752 -13.85836 -13.50640 -13.30175 -13.23835 -13.18577 -12.80628 -12.62633 -12.44091 -12.39832 -12.30148 -12.10090 -11.97611 -11.84189 -11.79560 -10.94712 -10.88794 -10.77579 -10.00775 -9.68804 -9.03059 -7.97663 -5.26794 1.47236 1.50061 1.53911 1.56253 1.69230 2.09191 2.22325 2.55859 3.36049 3.39785 3.48908 3.78366 3.79987 3.92031 4.09455 4.20941 4.29154 4.35051 4.35403 4.45451 4.50382 4.55195 4.59826 4.74119 4.74916 4.87904 4.88932 4.91363 4.94711 5.13506 5.26248 5.30254 5.31893 5.47543 5.51555 5.53857 6.19220 6.25198 6.61514 7.13289 7.31600 7.32495 8.06547 8.30215 9.25567 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.049177 B = 0.002285 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.232343 B =12250.628617 C =12517.762714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.611 5.611 3 C 0.495 3.505 4 O -0.597 6.597 5 C -0.147 4.147 6 C -0.112 4.112 7 C 0.138 3.862 8 H 0.084 0.916 9 C -0.142 4.142 10 C 0.499 3.501 11 O -0.573 6.573 12 N -0.719 5.719 13 C 0.135 3.865 14 C -0.118 4.118 15 C 0.151 3.849 16 N -0.747 5.747 17 C -0.251 4.251 18 H 0.074 0.926 19 C -0.075 4.075 20 N -0.968 5.968 21 Si 0.975 3.025 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.279 1.279 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.114 0.886 34 H 0.415 0.585 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.376 0.624 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.103 13.724 -5.117 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.344 5.344 3 C 0.285 3.715 4 O -0.478 6.478 5 C -0.186 4.186 6 C -0.150 4.150 7 C 0.035 3.965 8 H 0.102 0.898 9 C -0.182 4.182 10 C 0.287 3.713 11 O -0.454 6.454 12 N -0.372 5.372 13 C 0.010 3.990 14 C -0.156 4.156 15 C 0.024 3.976 16 N -0.390 5.390 17 C -0.383 4.383 18 H 0.092 0.908 19 C -0.267 4.267 20 N -0.618 5.618 21 Si 0.803 3.197 22 H -0.203 1.203 23 H -0.219 1.219 24 H -0.205 1.205 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.167 0.833 33 H 0.132 0.868 34 H 0.252 0.748 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.208 0.792 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 22.308 14.521 -5.969 27.279 hybrid contribution -1.322 -0.739 0.533 1.605 sum 20.986 13.781 -5.437 25.689 Atomic orbital electron populations 1.21684 0.78989 1.00810 1.02408 1.48399 1.06474 1.07877 1.71608 1.21897 0.91684 0.83664 0.74206 1.90681 1.80180 1.23382 1.53596 1.22395 0.90901 0.99215 1.06121 1.22782 0.94301 0.93394 1.04481 1.21770 0.90775 0.84039 0.99921 0.89827 1.22113 0.94152 1.01143 1.00806 1.21271 0.87277 0.78435 0.84282 1.90685 1.70795 1.58843 1.25031 1.45977 1.22250 1.43040 1.25912 1.21011 0.84893 0.96070 0.96993 1.21694 0.96385 0.98497 0.99044 1.20690 0.93436 0.91021 0.92418 1.42538 1.23389 1.48537 1.24546 1.19602 0.97715 1.16787 1.04201 0.90819 1.25586 1.02657 1.01375 0.97095 1.69788 1.40972 1.38415 1.12655 0.85200 0.79578 0.78046 0.76870 1.20337 1.21912 1.20466 0.93050 0.90542 0.92755 0.86711 0.86451 0.85707 0.87618 0.83294 0.86763 0.74806 0.92430 0.92088 0.90647 0.90968 0.96305 0.96099 0.79205 0.93849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.44 8.96 127.77 1.14 3.59 16 2 N -0.61 -11.97 3.19 -818.72 -2.61 -14.58 16 3 C 0.50 10.80 8.02 87.90 0.71 11.50 16 4 O -0.60 -19.18 17.35 -3.04 -0.05 -19.23 16 5 C -0.15 -1.41 6.86 30.59 0.21 -1.20 16 6 C -0.11 -0.41 6.68 31.65 0.21 -0.19 16 7 C 0.14 1.53 3.00 45.44 0.14 1.66 16 8 H 0.08 1.09 7.91 -2.39 -0.02 1.07 16 9 C -0.14 -1.17 5.04 29.85 0.15 -1.02 16 10 C 0.50 8.74 6.26 87.66 0.55 9.29 16 11 O -0.57 -14.67 12.02 -3.04 -0.04 -14.70 16 12 N -0.72 -12.12 5.56 -463.06 -2.57 -14.69 16 13 C 0.14 3.15 5.67 86.38 0.49 3.65 16 14 C -0.12 -3.24 5.44 30.59 0.17 -3.07 16 15 C 0.15 5.80 6.26 86.38 0.54 6.34 16 16 N -0.75 -37.44 5.60 -343.44 -1.92 -39.37 16 17 C -0.25 -14.05 9.99 84.04 0.84 -13.21 16 18 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 20 N -0.97 -58.46 13.06 21.65 0.28 -58.17 16 21 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H 0.05 1.35 7.53 -2.39 -0.02 1.33 16 26 H 0.08 2.05 6.03 -2.39 -0.01 2.04 16 27 H 0.05 1.20 6.75 -2.39 -0.02 1.19 16 28 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.11 0.04 7.91 -2.39 -0.02 0.02 16 32 H 0.15 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.11 0.71 8.14 -2.38 -0.02 0.70 16 34 H 0.42 4.66 8.47 -92.71 -0.79 3.88 16 35 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.38 19.65 7.67 -92.71 -0.71 18.94 16 42 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -79.43 343.33 0.26 -79.17 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.47 Total: 20.22 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.61 Total: 13.53 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -6.82 Total: -126.81 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.09 Total: -33.93 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -79.43 0.26 -79.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163797598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.995 kcal (2) G-P(sol) polarization free energy of solvation -79.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds