Wall clock time and date at job start Tue Mar 31 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00503 * 2 1 4 4 C 1.34781 * 119.99583 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99975 * 4.60381 * 4 2 1 6 6 C 1.50697 * 119.99879 * 184.31747 * 4 2 1 7 7 C 1.50692 * 115.55388 * 293.69873 * 6 4 2 8 8 O 1.21283 * 120.00316 * 116.85381 * 7 6 4 9 9 N 1.34775 * 120.00312 * 296.86164 * 7 6 4 10 10 C 1.46501 * 120.00416 * 174.84255 * 9 7 6 11 11 C 1.52998 * 109.47283 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47168 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47185 * 179.97438 * 12 11 10 14 14 C 1.36934 * 120.00173 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00062 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00206 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99940 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00339 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46754 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46986 * 119.99707 * 18 16 14 21 21 H 1.48491 * 109.46986 * 239.99912 * 18 16 14 22 22 C 1.53004 * 117.49678 * 148.02674 * 6 4 2 23 23 C 1.53009 * 117.49446 * 79.37068 * 6 4 2 24 24 H 1.08998 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47716 * 300.00679 * 1 2 3 26 26 H 1.09005 * 109.46961 * 60.00149 * 1 2 3 27 27 H 1.09000 * 109.46662 * 264.78177 * 3 2 1 28 28 H 1.08996 * 109.46783 * 24.77986 * 3 2 1 29 29 H 1.08997 * 109.47496 * 144.77882 * 3 2 1 30 30 H 0.97006 * 119.99790 * 354.84077 * 9 7 6 31 31 H 1.08992 * 109.47175 * 299.99783 * 10 9 7 32 32 H 1.09004 * 109.46749 * 59.99858 * 10 9 7 33 33 H 1.09005 * 109.47345 * 300.00379 * 11 10 9 34 34 H 1.08999 * 109.47046 * 59.99909 * 11 10 9 35 35 H 1.09000 * 109.47433 * 299.99941 * 12 11 10 36 36 H 1.08999 * 109.47168 * 60.00036 * 12 11 10 37 37 H 0.96999 * 120.00045 * 0.02562 * 13 12 11 38 38 H 0.97004 * 120.00290 * 180.02562 * 17 16 14 39 39 H 1.09000 * 117.50009 * 359.97438 * 22 6 4 40 40 H 1.08998 * 117.49849 * 145.02609 * 22 6 4 41 41 H 1.09001 * 117.49440 * 214.97865 * 23 6 4 42 42 H 1.08991 * 117.49643 * 359.97438 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5353 -2.2159 -0.0833 6 6 3.6426 -1.1692 0.0988 7 6 4.3718 -0.5776 -1.0799 8 8 5.0547 0.4141 -0.9350 9 7 4.2650 -1.1506 -2.2951 10 6 4.8804 -0.5135 -3.4620 11 6 4.6133 -1.3623 -4.7066 12 6 5.2554 -0.6966 -5.9254 13 7 5.0002 -1.5097 -7.1170 14 6 5.4814 -1.1095 -8.3349 15 1 6.0495 -0.1946 -8.4170 16 6 5.2392 -1.8796 -9.4641 17 7 4.5465 -2.9943 -9.3642 18 14 5.8962 -1.3340 -11.1255 19 1 6.6363 -0.0561 -10.9696 20 1 6.8107 -2.3739 -11.6619 21 1 4.7636 -1.1381 -12.0656 22 6 4.3020 -2.3473 0.8187 23 6 4.2602 -0.9695 1.4844 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.4602 1.5365 -1.0234 28 1 1.5713 2.0498 0.4307 29 1 3.1063 1.1635 0.5927 30 1 3.7807 -1.9848 -2.3971 31 1 4.4537 0.4798 -3.6009 32 1 5.9556 -0.4283 -3.3046 33 1 5.0403 -2.3556 -4.5675 34 1 3.5382 -1.4479 -4.8642 35 1 4.8280 0.2964 -6.0643 36 1 6.3306 -0.6107 -5.7681 37 1 4.4897 -2.3312 -7.0434 38 1 4.3775 -3.5327 -10.1532 39 1 3.6481 -3.1207 1.2215 40 1 5.2634 -2.6942 0.4399 41 1 5.1941 -0.4105 1.5432 42 1 3.5789 -0.8364 2.3246 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170740626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:26 Heat of formation + Delta-G solvation = -33.223620 kcal Electronic energy + Delta-G solvation = -22213.659929 eV Core-core repulsion = 18809.126124 eV Total energy + Delta-G solvation = -3404.533805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09981 -39.25750 -36.66844 -36.04211 -35.68891 -34.38507 -31.99525 -29.68557 -28.72820 -27.04519 -25.81780 -24.16297 -22.89925 -22.52831 -21.36416 -21.07788 -19.22911 -18.10302 -17.01261 -16.64969 -16.46599 -16.06828 -15.69144 -15.58372 -14.94369 -14.66577 -14.33438 -13.93998 -13.37829 -13.30259 -13.29304 -13.00443 -12.89567 -12.80187 -12.50901 -12.33034 -12.02629 -11.70902 -11.46848 -11.04081 -10.96626 -10.93732 -10.77420 -10.64884 -10.34798 -10.05115 -9.87737 -9.71154 -9.16221 -9.06920 -8.89392 -6.94416 -5.77742 -3.06994 2.03621 2.30227 2.54415 2.86137 3.40508 3.43207 3.48788 3.51179 4.01985 4.33116 4.38421 4.47537 4.58291 4.79868 4.96066 5.02888 5.06807 5.18067 5.25858 5.26226 5.29781 5.43138 5.48945 5.49437 5.56527 5.58769 5.69035 5.91248 6.01855 6.04316 6.16521 6.29843 6.34947 6.76317 6.80631 6.88382 7.32175 7.69704 7.72768 7.98205 8.40942 9.52146 10.09138 10.43744 11.45253 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.002858 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.396733 B = 9794.874743 C =10042.120712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.075 3.925 4 C 0.558 3.442 5 O -0.528 6.528 6 C -0.198 4.198 7 C 0.556 3.444 8 O -0.530 6.530 9 N -0.718 5.718 10 C 0.123 3.877 11 C -0.139 4.139 12 C 0.157 3.843 13 N -0.734 5.734 14 C -0.240 4.240 15 H 0.072 0.928 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.127 4.127 23 C -0.129 4.129 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.405 0.595 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 5.824 25.155 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.346 5.346 3 C -0.068 4.068 4 C 0.344 3.656 5 O -0.404 6.404 6 C -0.205 4.205 7 C 0.340 3.660 8 O -0.407 6.407 9 N -0.368 5.368 10 C 0.000 4.000 11 C -0.177 4.177 12 C 0.029 3.971 13 N -0.378 5.378 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.165 4.165 23 C -0.167 4.167 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.240 0.760 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.975 6.124 25.041 26.255 hybrid contribution -0.169 -0.277 -1.140 1.185 sum -5.144 5.846 23.901 25.138 Atomic orbital electron populations 1.21758 0.78603 1.04419 1.01613 1.47638 1.07302 1.06435 1.73257 1.21935 0.97491 0.84552 1.02853 1.19127 0.87004 0.83499 0.75979 1.90720 1.69264 1.31153 1.49261 1.21457 0.92919 1.09880 0.96215 1.18953 0.80758 0.83572 0.82758 1.90717 1.40081 1.25541 1.84335 1.46065 1.56022 1.27298 1.07432 1.21421 0.98446 0.96665 0.83511 1.21956 1.02145 0.99697 0.93896 1.20508 0.96795 0.94042 0.85728 1.42349 1.65767 1.26841 1.02872 1.19287 1.27372 1.05300 0.85194 0.91036 1.24763 1.00960 0.97290 0.98048 1.69673 1.44586 1.15227 1.28735 0.86095 0.78060 0.77673 0.84248 1.20499 1.21819 1.21837 1.23130 1.02004 0.91422 0.99903 1.23100 1.02863 0.99582 0.91118 0.89361 0.91958 0.91843 0.92208 0.90654 0.89997 0.76049 0.91292 0.90986 0.91133 0.91273 0.96098 0.96018 0.78267 0.93527 0.86763 0.87136 0.86551 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.66 59.85 0.64 1.25 16 2 N -0.61 -5.95 3.27 -189.52 -0.62 -6.57 16 3 C 0.07 0.61 9.34 59.84 0.56 1.17 16 4 C 0.56 6.45 6.94 -10.98 -0.08 6.38 16 5 O -0.53 -7.55 16.06 5.56 0.09 -7.46 16 6 C -0.20 -2.04 1.21 -156.81 -0.19 -2.23 16 7 C 0.56 6.85 5.97 -10.99 -0.07 6.79 16 8 O -0.53 -7.73 16.08 5.55 0.09 -7.64 16 9 N -0.72 -8.81 5.55 -60.30 -0.33 -9.14 16 10 C 0.12 1.66 5.68 -4.04 -0.02 1.64 16 11 C -0.14 -2.16 5.44 -26.73 -0.15 -2.31 16 12 C 0.16 3.15 6.26 -4.04 -0.03 3.12 16 13 N -0.73 -18.85 5.60 -59.91 -0.34 -19.18 16 14 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 15 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 18 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 C -0.13 -1.06 9.76 -26.69 -0.26 -1.32 16 23 C -0.13 -1.01 8.89 -26.69 -0.24 -1.24 16 24 H 0.09 0.81 6.91 -51.93 -0.36 0.45 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.07 0.43 8.03 -51.93 -0.42 0.02 16 29 H 0.08 0.70 5.81 -51.93 -0.30 0.39 16 30 H 0.40 4.63 8.48 -40.82 -0.35 4.28 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 38 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.11 0.93 8.02 -51.93 -0.42 0.52 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.12 0.90 7.95 -51.93 -0.41 0.49 16 42 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -34.17 354.66 -6.90 -41.06 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.76 Total: 8.07 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.07 Total: 5.74 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.57 Total: -62.67 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.18 Total: -15.10 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.17 -6.90 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170740626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.841 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds