Wall clock time and date at job start Tue Mar 31 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00503 * 2 1 4 4 C 1.34781 * 119.99583 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99975 * 4.60381 * 4 2 1 6 6 C 1.50697 * 119.99879 * 184.31747 * 4 2 1 7 7 C 1.50692 * 115.55388 * 293.69873 * 6 4 2 8 8 O 1.21283 * 120.00316 * 116.85381 * 7 6 4 9 9 N 1.34775 * 120.00312 * 296.86164 * 7 6 4 10 10 C 1.46501 * 120.00416 * 174.84255 * 9 7 6 11 11 C 1.52998 * 109.47283 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47168 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47185 * 179.97438 * 12 11 10 14 14 C 1.36934 * 120.00173 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00062 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00206 * 180.02562 * 14 13 12 17 17 N 1.31620 * 119.99940 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00339 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46754 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46986 * 119.99707 * 18 16 14 21 21 H 1.48491 * 109.46986 * 239.99912 * 18 16 14 22 22 C 1.53004 * 117.49678 * 148.02674 * 6 4 2 23 23 C 1.53009 * 117.49446 * 79.37068 * 6 4 2 24 24 H 1.08998 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47716 * 300.00679 * 1 2 3 26 26 H 1.09005 * 109.46961 * 60.00149 * 1 2 3 27 27 H 1.09000 * 109.46662 * 264.78177 * 3 2 1 28 28 H 1.08996 * 109.46783 * 24.77986 * 3 2 1 29 29 H 1.08997 * 109.47496 * 144.77882 * 3 2 1 30 30 H 0.97006 * 119.99790 * 354.84077 * 9 7 6 31 31 H 1.08992 * 109.47175 * 299.99783 * 10 9 7 32 32 H 1.09004 * 109.46749 * 59.99858 * 10 9 7 33 33 H 1.09005 * 109.47345 * 300.00379 * 11 10 9 34 34 H 1.08999 * 109.47046 * 59.99909 * 11 10 9 35 35 H 1.09000 * 109.47433 * 299.99941 * 12 11 10 36 36 H 1.08999 * 109.47168 * 60.00036 * 12 11 10 37 37 H 0.96999 * 120.00045 * 0.02562 * 13 12 11 38 38 H 0.97004 * 120.00290 * 180.02562 * 17 16 14 39 39 H 1.09000 * 117.50009 * 359.97438 * 22 6 4 40 40 H 1.08998 * 117.49849 * 145.02609 * 22 6 4 41 41 H 1.09001 * 117.49440 * 214.97865 * 23 6 4 42 42 H 1.08991 * 117.49643 * 359.97438 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5353 -2.2159 -0.0833 6 6 3.6426 -1.1692 0.0988 7 6 4.3718 -0.5776 -1.0799 8 8 5.0547 0.4141 -0.9350 9 7 4.2650 -1.1506 -2.2951 10 6 4.8804 -0.5135 -3.4620 11 6 4.6133 -1.3623 -4.7066 12 6 5.2554 -0.6966 -5.9254 13 7 5.0002 -1.5097 -7.1170 14 6 5.4814 -1.1095 -8.3349 15 1 6.0495 -0.1946 -8.4170 16 6 5.2392 -1.8796 -9.4641 17 7 4.5465 -2.9943 -9.3642 18 14 5.8962 -1.3340 -11.1255 19 1 6.6363 -0.0561 -10.9696 20 1 6.8107 -2.3739 -11.6619 21 1 4.7636 -1.1381 -12.0656 22 6 4.3020 -2.3473 0.8187 23 6 4.2602 -0.9695 1.4844 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 2.4602 1.5365 -1.0234 28 1 1.5713 2.0498 0.4307 29 1 3.1063 1.1635 0.5927 30 1 3.7807 -1.9848 -2.3971 31 1 4.4537 0.4798 -3.6009 32 1 5.9556 -0.4283 -3.3046 33 1 5.0403 -2.3556 -4.5675 34 1 3.5382 -1.4479 -4.8642 35 1 4.8280 0.2964 -6.0643 36 1 6.3306 -0.6107 -5.7681 37 1 4.4897 -2.3312 -7.0434 38 1 4.3775 -3.5327 -10.1532 39 1 3.6481 -3.1207 1.2215 40 1 5.2634 -2.6942 0.4399 41 1 5.1941 -0.4105 1.5432 42 1 3.5789 -0.8364 2.3246 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170740626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:25 Heat of formation + Delta-G solvation = -58.163321 kcal Electronic energy + Delta-G solvation = -22214.741396 eV Core-core repulsion = 18809.126124 eV Total energy + Delta-G solvation = -3405.615271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.96239 -40.21740 -37.74666 -37.08351 -36.63554 -35.92602 -33.77061 -31.37405 -29.40405 -27.90368 -27.18563 -25.48234 -24.06996 -23.49511 -22.62529 -22.21220 -20.18840 -19.20783 -18.81377 -17.49487 -17.38146 -17.09760 -16.70166 -16.68231 -16.36842 -15.73654 -15.52991 -15.32157 -15.03869 -14.74355 -14.19078 -14.05988 -13.86192 -13.51896 -13.42541 -13.34056 -13.01542 -12.85554 -12.67428 -12.61034 -12.46737 -12.22888 -12.11715 -12.05124 -11.83036 -11.67246 -11.20827 -10.97301 -10.83449 -10.21911 -9.82994 -9.03927 -7.97806 -5.27583 1.13974 1.39713 1.47256 1.48131 1.58527 1.82927 1.93131 2.54792 2.65508 3.27824 3.36299 3.49947 3.65755 3.71110 3.73761 4.03080 4.20288 4.23810 4.35139 4.40945 4.41547 4.55603 4.62941 4.66414 4.66638 4.69162 4.81551 4.82969 4.86179 4.87958 5.07862 5.21614 5.27387 5.30838 5.35225 5.47787 6.10926 6.24509 6.33488 6.90124 7.00108 7.30887 8.05377 8.28646 9.25996 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.002858 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.396733 B = 9794.874743 C =10042.120712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.612 5.612 3 C 0.075 3.925 4 C 0.554 3.446 5 O -0.563 6.563 6 C -0.212 4.212 7 C 0.559 3.441 8 O -0.553 6.553 9 N -0.716 5.716 10 C 0.135 3.865 11 C -0.121 4.121 12 C 0.154 3.846 13 N -0.749 5.749 14 C -0.249 4.249 15 H 0.077 0.923 16 C -0.076 4.076 17 N -0.970 5.970 18 Si 0.976 3.024 19 H -0.265 1.265 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.122 4.122 23 C -0.110 4.110 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.409 0.591 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.026 0.974 37 H 0.374 0.626 38 H 0.252 0.748 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 6.991 26.286 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.344 5.344 3 C -0.067 4.067 4 C 0.341 3.659 5 O -0.442 6.442 6 C -0.219 4.219 7 C 0.345 3.655 8 O -0.431 6.431 9 N -0.367 5.367 10 C 0.011 3.989 11 C -0.159 4.159 12 C 0.027 3.973 13 N -0.392 5.392 14 C -0.381 4.381 15 H 0.095 0.905 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.805 3.195 19 H -0.189 1.189 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.159 4.159 23 C -0.148 4.148 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.245 0.755 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.206 0.794 38 H 0.061 0.939 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.723 7.340 26.208 27.623 hybrid contribution -0.258 -0.581 -1.425 1.560 sum -4.981 6.760 24.783 26.167 Atomic orbital electron populations 1.21895 0.77615 1.03881 1.03333 1.47808 1.08141 1.06453 1.72025 1.22000 0.98025 0.84554 1.02139 1.19335 0.87451 0.83516 0.75643 1.90700 1.70005 1.32379 1.51142 1.21364 0.92107 1.11882 0.96526 1.19210 0.80296 0.83063 0.82977 1.90703 1.41209 1.26499 1.84704 1.46011 1.55940 1.27473 1.07255 1.21168 0.98494 0.96123 0.83074 1.21717 1.01527 0.99654 0.93011 1.20667 0.97328 0.93770 0.85515 1.42576 1.65550 1.27128 1.03896 1.19697 1.26698 1.05229 0.86429 0.90505 1.25617 1.01849 0.97620 1.01752 1.69825 1.46252 1.16493 1.29467 0.85037 0.77277 0.77665 0.79561 1.18943 1.21886 1.21918 1.23224 1.01996 0.91513 0.99214 1.23214 1.02842 0.98746 0.89973 0.91013 0.89313 0.91016 0.93693 0.87795 0.90145 0.75522 0.91351 0.91027 0.90974 0.91428 0.95781 0.95636 0.79375 0.93906 0.86561 0.86442 0.86244 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.66 127.77 1.36 2.42 16 2 N -0.61 -11.06 3.27 -871.90 -2.85 -13.92 16 3 C 0.08 1.10 9.34 127.77 1.19 2.30 16 4 C 0.55 12.35 6.94 87.66 0.61 12.96 16 5 O -0.56 -16.03 16.06 -3.03 -0.05 -16.08 16 6 C -0.21 -4.10 1.21 -53.67 -0.06 -4.17 16 7 C 0.56 13.22 5.97 87.65 0.52 13.74 16 8 O -0.55 -15.50 16.08 -3.04 -0.05 -15.55 16 9 N -0.72 -16.96 5.55 -463.08 -2.57 -19.53 16 10 C 0.14 3.52 5.68 86.38 0.49 4.01 16 11 C -0.12 -3.69 5.44 30.59 0.17 -3.52 16 12 C 0.15 6.07 6.26 86.38 0.54 6.61 16 13 N -0.75 -38.51 5.60 -343.46 -1.92 -40.43 16 14 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 15 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 17 N -0.97 -59.81 13.06 21.65 0.28 -59.52 16 18 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 C -0.12 -1.86 9.76 30.62 0.30 -1.56 16 23 C -0.11 -1.50 8.89 30.62 0.27 -1.23 16 24 H 0.07 1.29 6.91 -2.39 -0.02 1.27 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 28 H 0.10 0.91 8.03 -2.39 -0.02 0.89 16 29 H 0.08 1.22 5.81 -2.39 -0.01 1.21 16 30 H 0.41 9.09 8.48 -92.70 -0.79 8.30 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.37 20.34 7.67 -92.71 -0.71 19.63 16 38 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.12 1.75 8.02 -2.39 -0.02 1.74 16 40 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.12 1.60 7.95 -2.39 -0.02 1.58 16 42 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -72.56 354.66 1.09 -71.47 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -0.47 Total: 30.82 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.70 Total: 14.37 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -7.07 Total: -133.40 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.10 Total: -31.63 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -72.56 1.09 -71.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170740626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.310 kcal (2) G-P(sol) polarization free energy of solvation -72.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds