Wall clock time and date at job start Tue Mar 31 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99453 * 2 1 4 4 N 1.34771 * 120.00152 * 180.02562 * 2 1 3 5 5 C 1.47023 * 125.64904 * 359.97180 * 4 2 1 6 6 C 1.54320 * 107.26941 * 178.98883 * 5 4 2 7 7 C 1.55155 * 102.94566 * 337.80789 * 6 5 4 8 8 H 1.09004 * 111.00050 * 277.39082 * 7 6 5 9 9 C 1.50698 * 111.00882 * 153.57871 * 7 6 5 10 10 O 1.21286 * 119.99758 * 359.97438 * 9 7 6 11 11 N 1.34770 * 120.00019 * 180.02562 * 9 7 6 12 12 C 1.46507 * 119.99912 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47485 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47212 * 179.97438 * 14 13 12 16 16 C 1.36936 * 119.99992 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46951 * 89.99797 * 20 18 16 22 22 H 1.48500 * 109.47313 * 210.00112 * 20 18 16 23 23 H 1.48501 * 109.46991 * 330.00153 * 20 18 16 24 24 C 1.47424 * 125.64715 * 180.02562 * 4 2 1 25 25 H 1.09000 * 109.47072 * 269.99565 * 1 2 3 26 26 H 1.08996 * 109.47453 * 29.99560 * 1 2 3 27 27 H 1.09000 * 109.47126 * 149.99590 * 1 2 3 28 28 H 1.09004 * 109.88084 * 59.57010 * 5 4 2 29 29 H 1.08999 * 109.88221 * 298.40641 * 5 4 2 30 30 H 1.09004 * 110.71836 * 219.44448 * 6 5 4 31 31 H 1.09006 * 110.72382 * 96.17295 * 6 5 4 32 32 H 0.96992 * 120.00518 * 359.97438 * 11 9 7 33 33 H 1.09002 * 109.47280 * 59.99618 * 12 11 9 34 34 H 1.09001 * 109.46702 * 299.99811 * 12 11 9 35 35 H 1.09002 * 109.47103 * 59.99596 * 13 12 11 36 36 H 1.08998 * 109.46862 * 300.00408 * 13 12 11 37 37 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 38 38 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 39 39 H 0.96996 * 119.99606 * 0.02562 * 15 14 13 40 40 H 0.97001 * 120.00803 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.36303 * 85.24199 * 24 4 2 42 42 H 1.08998 * 110.36584 * 322.91943 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5748 -2.5066 -0.0005 6 6 2.7282 -3.5314 -0.0272 7 6 3.9084 -2.7113 -0.6118 8 1 3.8595 -2.6777 -1.7002 9 6 5.2319 -3.2649 -0.1504 10 8 5.2628 -4.2303 0.5831 11 7 6.3811 -2.6865 -0.5520 12 6 7.6678 -3.2251 -0.1038 13 6 8.8046 -2.3922 -0.6993 14 6 10.1482 -2.9542 -0.2307 15 7 11.2368 -2.1569 -0.8015 16 6 12.5387 -2.4742 -0.5193 17 1 12.7629 -3.3125 0.1238 18 6 13.5700 -1.7186 -1.0596 19 7 13.2967 -0.6967 -1.8428 20 14 15.3460 -2.1518 -0.6752 21 1 15.8517 -3.1122 -1.6887 22 1 16.1737 -0.9193 -0.7046 23 1 15.4242 -2.7685 0.6735 24 6 3.6480 -1.3122 -0.0001 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5139 28 1 0.9485 -2.6301 -0.8842 29 1 0.9781 -2.6434 0.9013 30 1 2.4829 -4.3713 -0.6773 31 1 2.9604 -3.8771 0.9801 32 1 6.3564 -1.9143 -1.1382 33 1 7.7638 -4.2593 -0.4344 34 1 7.7191 -3.1852 0.9843 35 1 8.7087 -1.3578 -0.3690 36 1 8.7530 -2.4323 -1.7873 37 1 10.2443 -3.9886 -0.5607 38 1 10.1995 -2.9136 0.8573 39 1 11.0353 -1.4039 -1.3787 40 1 14.0173 -0.1683 -2.2201 41 1 4.0334 -1.2658 1.0185 42 1 4.1059 -0.5378 -0.6155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174827088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:46 Heat of formation + Delta-G solvation = -69.513847 kcal Electronic energy + Delta-G solvation = -21496.235751 eV Core-core repulsion = 18090.128283 eV Total energy + Delta-G solvation = -3406.107467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78393 -39.56651 -37.46751 -36.05373 -34.40346 -32.70520 -31.92510 -30.28189 -29.90697 -28.87358 -25.48380 -24.24190 -22.99829 -22.00175 -21.23514 -20.07770 -19.73016 -17.82629 -17.47316 -16.99714 -16.21144 -16.06393 -15.79933 -15.50694 -14.89452 -14.60207 -14.33596 -13.91567 -13.76783 -13.33527 -13.28953 -13.16726 -13.02966 -12.90928 -12.49477 -12.38758 -12.09214 -11.80163 -11.59362 -11.33216 -10.98439 -10.93402 -10.79772 -10.63936 -10.33911 -10.11270 -9.94068 -9.70782 -9.15089 -9.12920 -8.88826 -6.94486 -5.77765 -3.06962 2.22488 2.32690 2.56462 3.05389 3.43708 3.48723 3.50618 3.84805 4.04055 4.38140 4.42537 4.58367 4.65337 4.75016 4.80368 4.82054 4.95499 5.05132 5.11278 5.26934 5.27954 5.35742 5.38725 5.50106 5.56637 5.59424 5.65759 5.80470 5.93787 6.02994 6.16819 6.30156 6.36908 6.76775 6.81071 7.04826 7.35024 7.69350 7.74315 8.03624 8.41090 9.52177 10.09112 10.43699 11.45198 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.002360 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.687112 B =11861.986018 C =12599.691946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.526 3.474 3 O -0.543 6.543 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.113 4.113 7 C -0.127 4.127 8 H 0.112 0.888 9 C 0.523 3.477 10 O -0.537 6.537 11 N -0.724 5.724 12 C 0.121 3.879 13 C -0.138 4.138 14 C 0.156 3.844 15 N -0.734 5.734 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.117 3.883 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.402 0.598 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.075 0.925 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.329 -3.689 1.613 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.420 6.420 4 N -0.357 5.357 5 C -0.024 4.024 6 C -0.151 4.151 7 C -0.149 4.149 8 H 0.130 0.870 9 C 0.308 3.692 10 O -0.414 6.414 11 N -0.375 5.375 12 C -0.002 4.002 13 C -0.177 4.177 14 C 0.028 3.972 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.006 4.006 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.236 0.764 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.872 -3.821 2.228 29.209 hybrid contribution 0.981 0.359 -0.382 1.112 sum -27.891 -3.462 1.845 28.166 Atomic orbital electron populations 1.21887 0.91122 1.04955 1.04865 1.20556 0.90470 0.81892 0.75560 1.90763 1.70756 1.30583 1.49883 1.48562 1.07056 1.06116 1.73958 1.22154 0.96586 0.81414 1.02201 1.22559 0.91752 0.96908 1.03857 1.22551 0.93533 0.96226 1.02579 0.87023 1.20087 0.85073 0.83531 0.80541 1.90720 1.87483 1.26895 1.36272 1.46116 1.06161 1.33817 1.51356 1.21398 0.80974 0.98094 0.99741 1.21950 0.94607 0.99886 1.01212 1.20518 0.85967 0.94501 0.96184 1.42340 1.01291 1.35568 1.58625 1.19241 0.82930 1.10739 1.24241 0.91087 1.24761 0.98088 0.98056 1.00198 1.69658 1.31275 1.20540 1.36822 0.86159 0.84884 0.77130 0.77845 1.21685 1.21738 1.20713 1.22101 0.81339 0.95409 1.01745 0.88734 0.88736 0.90110 0.90851 0.90743 0.89177 0.88766 0.76358 0.91228 0.91231 0.91215 0.91253 0.96068 0.96052 0.78285 0.93481 0.90688 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 9.90 36.01 0.36 -0.47 16 2 C 0.53 4.92 7.96 -10.99 -0.09 4.84 16 3 O -0.54 -7.66 17.36 5.56 0.10 -7.56 16 4 N -0.62 -4.90 3.33 -170.52 -0.57 -5.47 16 5 C 0.10 0.49 6.16 -3.07 -0.02 0.47 16 6 C -0.11 -0.71 6.08 -24.90 -0.15 -0.86 16 7 C -0.13 -0.95 3.43 -89.63 -0.31 -1.26 16 8 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 9 C 0.52 5.75 7.14 -10.99 -0.08 5.67 16 10 O -0.54 -7.89 15.71 5.55 0.09 -7.80 16 11 N -0.72 -7.69 5.56 -60.29 -0.33 -8.02 16 12 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 13 C -0.14 -2.07 5.44 -26.74 -0.15 -2.22 16 14 C 0.16 3.10 6.26 -4.04 -0.03 3.08 16 15 N -0.73 -18.72 5.60 -59.91 -0.34 -19.06 16 16 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 17 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.12 1.00 6.36 -2.53 -0.02 0.98 16 25 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.22 7.07 -51.93 -0.37 -0.15 16 28 H 0.07 0.23 7.77 -51.93 -0.40 -0.18 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.75 7.39 -51.93 -0.38 0.36 16 32 H 0.40 3.40 8.47 -40.82 -0.35 3.05 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 42 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -36.17 351.52 -7.64 -43.81 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.84 Total: 4.70 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.74 Total: 4.28 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.51 Total: -60.27 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.18 Total: -15.37 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.17 -7.64 -43.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174827088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.706 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds