Wall clock time and date at job start Tue Mar 31 2020 02:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99453 * 2 1 4 4 N 1.34771 * 120.00152 * 180.02562 * 2 1 3 5 5 C 1.47023 * 125.64904 * 359.97180 * 4 2 1 6 6 C 1.54320 * 107.26941 * 178.98883 * 5 4 2 7 7 C 1.55155 * 102.94566 * 337.80789 * 6 5 4 8 8 H 1.09004 * 111.00050 * 277.39082 * 7 6 5 9 9 C 1.50698 * 111.00882 * 153.57871 * 7 6 5 10 10 O 1.21286 * 119.99758 * 359.97438 * 9 7 6 11 11 N 1.34770 * 120.00019 * 180.02562 * 9 7 6 12 12 C 1.46507 * 119.99912 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47485 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 N 1.46505 * 109.47212 * 179.97438 * 14 13 12 16 16 C 1.36936 * 119.99992 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99834 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00093 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00176 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00265 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46951 * 89.99797 * 20 18 16 22 22 H 1.48500 * 109.47313 * 210.00112 * 20 18 16 23 23 H 1.48501 * 109.46991 * 330.00153 * 20 18 16 24 24 C 1.47424 * 125.64715 * 180.02562 * 4 2 1 25 25 H 1.09000 * 109.47072 * 269.99565 * 1 2 3 26 26 H 1.08996 * 109.47453 * 29.99560 * 1 2 3 27 27 H 1.09000 * 109.47126 * 149.99590 * 1 2 3 28 28 H 1.09004 * 109.88084 * 59.57010 * 5 4 2 29 29 H 1.08999 * 109.88221 * 298.40641 * 5 4 2 30 30 H 1.09004 * 110.71836 * 219.44448 * 6 5 4 31 31 H 1.09006 * 110.72382 * 96.17295 * 6 5 4 32 32 H 0.96992 * 120.00518 * 359.97438 * 11 9 7 33 33 H 1.09002 * 109.47280 * 59.99618 * 12 11 9 34 34 H 1.09001 * 109.46702 * 299.99811 * 12 11 9 35 35 H 1.09002 * 109.47103 * 59.99596 * 13 12 11 36 36 H 1.08998 * 109.46862 * 300.00408 * 13 12 11 37 37 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 38 38 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 39 39 H 0.96996 * 119.99606 * 0.02562 * 15 14 13 40 40 H 0.97001 * 120.00803 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.36303 * 85.24199 * 24 4 2 42 42 H 1.08998 * 110.36584 * 322.91943 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5748 -2.5066 -0.0005 6 6 2.7282 -3.5314 -0.0272 7 6 3.9084 -2.7113 -0.6118 8 1 3.8595 -2.6777 -1.7002 9 6 5.2319 -3.2649 -0.1504 10 8 5.2628 -4.2303 0.5831 11 7 6.3811 -2.6865 -0.5520 12 6 7.6678 -3.2251 -0.1038 13 6 8.8046 -2.3922 -0.6993 14 6 10.1482 -2.9542 -0.2307 15 7 11.2368 -2.1569 -0.8015 16 6 12.5387 -2.4742 -0.5193 17 1 12.7629 -3.3125 0.1238 18 6 13.5700 -1.7186 -1.0596 19 7 13.2967 -0.6967 -1.8428 20 14 15.3460 -2.1518 -0.6752 21 1 15.8517 -3.1122 -1.6887 22 1 16.1737 -0.9193 -0.7046 23 1 15.4242 -2.7685 0.6735 24 6 3.6480 -1.3122 -0.0001 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5139 28 1 0.9485 -2.6301 -0.8842 29 1 0.9781 -2.6434 0.9013 30 1 2.4829 -4.3713 -0.6773 31 1 2.9604 -3.8771 0.9801 32 1 6.3564 -1.9143 -1.1382 33 1 7.7638 -4.2593 -0.4344 34 1 7.7191 -3.1852 0.9843 35 1 8.7087 -1.3578 -0.3690 36 1 8.7530 -2.4323 -1.7873 37 1 10.2443 -3.9886 -0.5607 38 1 10.1995 -2.9136 0.8573 39 1 11.0353 -1.4039 -1.3787 40 1 14.0173 -0.1683 -2.2201 41 1 4.0334 -1.2658 1.0185 42 1 4.1059 -0.5378 -0.6155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174827088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:45 Heat of formation + Delta-G solvation = -96.987489 kcal Electronic energy + Delta-G solvation = -21497.427097 eV Core-core repulsion = 18090.128283 eV Total energy + Delta-G solvation = -3407.298814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52178 -40.41472 -38.23944 -37.45964 -35.93205 -33.86809 -33.21279 -31.38566 -30.74867 -29.67821 -27.02218 -25.17493 -24.34892 -22.94561 -22.59432 -20.97617 -20.34167 -19.21451 -18.46818 -18.09442 -17.17134 -17.02080 -16.75813 -16.45294 -16.32495 -15.73668 -15.32017 -15.30630 -14.95578 -14.52072 -14.48144 -14.04455 -13.78879 -13.63152 -13.33046 -13.27912 -12.98484 -12.82846 -12.69095 -12.55422 -12.45410 -12.30423 -12.08154 -12.06134 -11.85275 -11.80194 -11.13826 -10.96060 -10.88168 -10.14778 -9.76604 -9.03664 -7.97950 -5.27464 1.46247 1.46800 1.48660 1.57267 1.57595 1.88991 2.21381 2.55284 3.26950 3.35866 3.44621 3.74229 3.78162 3.87240 4.06759 4.14261 4.20035 4.26174 4.27446 4.45109 4.50333 4.54981 4.63550 4.71129 4.71782 4.75959 4.80860 4.87511 4.97242 5.09372 5.13937 5.24483 5.27520 5.29992 5.39821 5.47387 6.24686 6.45374 6.48269 7.08175 7.15813 7.30976 8.05813 8.29256 9.25569 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.002360 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.687112 B =11861.986018 C =12599.691946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.516 3.484 3 O -0.603 6.603 4 N -0.620 5.620 5 C 0.100 3.900 6 C -0.111 4.111 7 C -0.114 4.114 8 H 0.137 0.863 9 C 0.523 3.477 10 O -0.575 6.575 11 N -0.717 5.717 12 C 0.133 3.867 13 C -0.120 4.120 14 C 0.152 3.848 15 N -0.748 5.748 16 C -0.249 4.249 17 H 0.076 0.924 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.976 3.024 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.270 1.270 24 C 0.115 3.885 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.414 0.586 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.021 0.979 39 H 0.375 0.625 40 H 0.252 0.748 41 H 0.058 0.942 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.166 -4.831 1.344 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.308 3.692 3 O -0.485 6.485 4 N -0.354 5.354 5 C -0.021 4.021 6 C -0.149 4.149 7 C -0.136 4.136 8 H 0.154 0.846 9 C 0.309 3.691 10 O -0.455 6.455 11 N -0.369 5.369 12 C 0.008 3.992 13 C -0.158 4.158 14 C 0.025 3.975 15 N -0.391 5.391 16 C -0.381 4.381 17 H 0.094 0.906 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.805 3.195 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.195 1.195 24 C -0.009 4.009 25 H 0.127 0.873 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.251 0.749 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.207 0.793 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -30.754 -5.013 1.965 31.222 hybrid contribution 1.512 0.652 -0.256 1.666 sum -29.242 -4.361 1.709 29.615 Atomic orbital electron populations 1.21916 0.87400 1.06395 1.06216 1.21431 0.92236 0.81227 0.74320 1.90732 1.72210 1.32704 1.52805 1.48691 1.06752 1.07162 1.72839 1.22369 0.96197 0.79004 1.04548 1.22582 0.91566 0.97713 1.03041 1.22507 0.91817 0.95445 1.03831 0.84561 1.20657 0.86012 0.82819 0.79594 1.90706 1.88079 1.28721 1.37952 1.46020 1.05405 1.34094 1.51366 1.21101 0.81440 0.97536 0.99082 1.21709 0.92725 0.99883 1.01472 1.20687 0.86825 0.94111 0.95885 1.42561 1.01852 1.35931 1.58741 1.19652 0.84404 1.10472 1.23584 0.90640 1.25616 1.02298 0.98343 1.00660 1.69808 1.32219 1.21738 1.38216 0.85104 0.79694 0.76651 0.78089 1.21209 1.22048 1.19460 1.22013 0.82315 0.95826 1.00750 0.87253 0.88814 0.87147 0.87814 0.89040 0.87345 0.90735 0.74933 0.91558 0.92026 0.91075 0.90678 0.95816 0.96088 0.79282 0.93888 0.92405 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.90 71.24 0.71 -0.44 16 2 C 0.52 9.11 7.96 87.66 0.70 9.81 16 3 O -0.60 -17.36 17.36 -3.04 -0.05 -17.41 16 4 N -0.62 -8.75 3.33 -811.80 -2.70 -11.45 16 5 C 0.10 0.65 6.16 86.73 0.53 1.19 16 6 C -0.11 -1.13 6.08 31.78 0.19 -0.94 16 7 C -0.11 -1.52 3.43 -10.15 -0.03 -1.55 16 8 H 0.14 1.20 8.14 -2.38 -0.02 1.18 16 9 C 0.52 11.02 7.14 87.66 0.63 11.65 16 10 O -0.58 -16.69 15.71 -3.05 -0.05 -16.74 16 11 N -0.72 -14.57 5.56 -463.06 -2.57 -17.15 16 12 C 0.13 3.37 5.67 86.38 0.49 3.86 16 13 C -0.12 -3.51 5.44 30.59 0.17 -3.34 16 14 C 0.15 5.98 6.26 86.38 0.54 6.52 16 15 N -0.75 -38.33 5.60 -343.45 -1.92 -40.25 16 16 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 19 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 20 Si 0.98 46.47 29.55 68.60 2.03 48.49 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.11 1.88 6.36 86.85 0.55 2.44 16 25 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.11 0.12 7.07 -2.39 -0.02 0.11 16 28 H 0.10 0.14 7.77 -2.38 -0.02 0.12 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.10 7.39 -2.38 -0.02 1.08 16 32 H 0.41 6.49 8.47 -92.71 -0.79 5.71 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.38 20.17 7.67 -92.71 -0.71 19.46 16 40 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.06 1.14 8.03 -2.39 -0.02 1.12 16 42 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 Total: -1.00 -79.61 351.52 0.32 -79.29 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.47 Total: 22.71 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.78 Total: 11.88 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -6.91 Total: -128.22 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.10 Total: -34.15 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -79.61 0.32 -79.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174827088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.693 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds