Wall clock time and date at job start Tue Mar 31 2020 03:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.33354 * 117.94948 * 2 1 4 4 O 1.21284 * 118.24288 * 2.24418 * 3 2 1 5 5 C 1.50175 * 123.50872 * 182.21979 * 3 2 1 6 6 C 1.53062 * 109.89586 * 342.41611 * 5 3 2 7 7 C 1.53350 * 108.42288 * 48.89704 * 6 5 3 8 8 C 1.45764 * 117.94709 * 179.97438 * 2 1 3 9 9 H 1.09001 * 109.30008 * 281.24339 * 8 2 1 10 10 C 1.50698 * 109.12903 * 40.72324 * 8 2 1 11 11 O 1.21274 * 120.00152 * 28.91870 * 10 8 2 12 12 N 1.34777 * 119.99693 * 208.91843 * 10 8 2 13 13 C 1.46492 * 120.00190 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47751 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.47694 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47305 * 179.97438 * 15 14 13 17 17 C 1.36933 * 119.99966 * 179.97438 * 16 15 14 18 18 H 1.08008 * 120.00342 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00095 * 180.02562 * 17 16 15 20 20 N 1.31614 * 119.99992 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99680 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46828 * 90.00275 * 21 19 17 23 23 H 1.48498 * 109.46767 * 210.00103 * 21 19 17 24 24 H 1.48497 * 109.46933 * 329.99842 * 21 19 17 25 25 H 1.09004 * 109.47464 * 204.76225 * 1 2 3 26 26 H 1.09000 * 109.47265 * 324.76989 * 1 2 3 27 27 H 1.08998 * 109.46898 * 84.76438 * 1 2 3 28 28 H 1.09004 * 109.40048 * 222.28910 * 5 3 2 29 29 H 1.09001 * 109.39847 * 102.54910 * 5 3 2 30 30 H 1.09003 * 109.67416 * 289.17238 * 6 5 3 31 31 H 1.08995 * 109.68025 * 168.63423 * 6 5 3 32 32 H 1.08999 * 109.60393 * 172.71097 * 7 6 5 33 33 H 1.09009 * 109.73631 * 52.30989 * 7 6 5 34 34 H 0.97000 * 119.99737 * 359.97438 * 12 10 8 35 35 H 1.09006 * 109.47158 * 299.99916 * 13 12 10 36 36 H 1.09004 * 109.47661 * 59.99452 * 13 12 10 37 37 H 1.09007 * 109.46448 * 299.99868 * 14 13 12 38 38 H 1.09004 * 109.46878 * 59.99104 * 14 13 12 39 39 H 1.09007 * 109.46690 * 300.00171 * 15 14 13 40 40 H 1.09001 * 109.47248 * 59.99334 * 15 14 13 41 41 H 0.96995 * 119.99874 * 0.02562 * 16 15 14 42 42 H 0.97006 * 119.99598 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.0900 1.1780 0.0000 4 8 1.4158 2.1854 0.0418 5 6 3.5838 1.3239 -0.0485 6 6 4.2492 0.0013 0.3398 7 6 3.5948 -1.1260 -0.4680 8 6 2.1481 -1.2876 0.0006 9 1 2.1397 -1.6995 1.0098 10 6 1.4263 -2.2300 -0.9279 11 8 0.8198 -1.7939 -1.8833 12 7 1.4548 -3.5574 -0.6964 13 6 0.7537 -4.4736 -1.5992 14 6 0.9439 -5.9124 -1.1147 15 6 0.2111 -6.8692 -2.0572 16 7 0.3938 -8.2468 -1.5935 17 6 -0.1759 -9.2829 -2.2841 18 1 -0.7604 -9.0845 -3.1704 19 6 -0.0033 -10.5882 -1.8444 20 7 -0.5505 -11.5841 -2.5085 21 14 1.0070 -10.9313 -0.3110 22 1 0.1209 -10.9104 0.8804 23 1 1.6471 -12.2661 -0.4285 24 1 2.0560 -9.8903 -0.1662 25 1 -0.3634 -0.9332 0.4304 26 1 -0.3634 0.8394 0.5928 27 1 -0.3633 0.0938 -1.0234 28 1 3.8943 2.1034 0.6474 29 1 3.8880 1.5996 -1.0582 30 1 4.1086 -0.1813 1.4052 31 1 5.3142 0.0455 0.1120 32 1 4.1383 -2.0564 -0.3040 33 1 3.6102 -0.8755 -1.5288 34 1 1.9402 -3.9062 0.0675 35 1 -0.3090 -4.2310 -1.6098 36 1 1.1593 -4.3731 -2.6060 37 1 2.0067 -6.1547 -1.1045 38 1 0.5386 -6.0132 -0.1078 39 1 -0.8515 -6.6266 -2.0670 40 1 0.6161 -6.7684 -3.0641 41 1 0.9178 -8.4249 -0.7969 42 1 -0.4301 -12.4962 -2.2010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174943372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:43 Heat of formation + Delta-G solvation = -91.321410 kcal Electronic energy + Delta-G solvation = -22076.539636 eV Core-core repulsion = 18669.486522 eV Total energy + Delta-G solvation = -3407.053114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.04638 -40.39938 -37.79608 -37.24917 -36.02829 -35.01462 -33.90887 -32.12021 -30.78752 -28.20615 -27.34868 -25.83047 -23.94909 -23.26900 -22.69163 -21.72282 -19.78543 -19.62342 -18.51896 -17.83167 -17.59261 -16.95106 -16.73417 -16.55997 -16.19060 -15.69642 -15.53566 -15.25556 -15.03965 -14.79502 -14.48415 -14.42902 -13.99579 -13.78021 -13.57081 -13.23447 -13.03522 -12.87000 -12.60160 -12.53260 -12.49442 -12.07168 -12.00013 -11.98422 -11.84189 -11.80184 -11.31449 -10.97337 -10.71300 -10.17505 -9.82170 -9.31578 -8.02813 -5.38116 1.35507 1.39169 1.45289 1.48728 1.52733 1.85737 2.18002 2.50133 3.28447 3.43783 3.52805 3.58853 3.65939 3.84890 4.01682 4.09676 4.18180 4.25331 4.25717 4.29128 4.51582 4.54181 4.71827 4.72891 4.77499 4.81618 4.84588 4.89922 4.95449 5.03120 5.22050 5.25462 5.29456 5.30102 5.38379 5.74930 6.20626 6.28460 6.49552 7.01893 7.07950 7.16613 7.82207 8.03433 9.18733 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.037618 B = 0.002624 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.140571 B =10668.911822 C =11049.261089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.590 5.590 3 C 0.509 3.491 4 O -0.603 6.603 5 C -0.133 4.133 6 C -0.111 4.111 7 C -0.127 4.127 8 C 0.129 3.871 9 H 0.135 0.865 10 C 0.500 3.500 11 O -0.573 6.573 12 N -0.706 5.706 13 C 0.131 3.869 14 C -0.121 4.121 15 C 0.152 3.848 16 N -0.758 5.758 17 C -0.243 4.243 18 H 0.051 0.949 19 C -0.070 4.070 20 N -0.986 5.986 21 Si 0.965 3.035 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.242 1.242 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.421 0.579 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.022 0.978 40 H 0.023 0.977 41 H 0.370 0.630 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.445 24.313 12.113 30.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.322 5.322 3 C 0.300 3.700 4 O -0.485 6.485 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.165 4.165 8 C 0.022 3.978 9 H 0.152 0.848 10 C 0.285 3.715 11 O -0.452 6.452 12 N -0.359 5.359 13 C 0.007 3.993 14 C -0.159 4.159 15 C 0.026 3.974 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.069 0.931 19 C -0.261 4.261 20 N -0.637 5.637 21 Si 0.791 3.209 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.166 1.166 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.259 0.741 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.203 0.797 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.561 25.042 11.275 30.628 hybrid contribution -0.182 -0.948 0.356 1.029 sum 13.379 24.094 11.631 29.913 Atomic orbital electron populations 1.21603 0.79917 1.02778 1.01519 1.47095 1.07479 1.05695 1.71922 1.21033 0.92762 0.81720 0.74520 1.90698 1.68065 1.37064 1.52668 1.21761 0.87653 1.01950 1.05833 1.21672 1.01426 0.90574 1.01148 1.21972 0.90542 1.03103 1.00860 1.21317 0.93814 0.82088 1.00592 0.84752 1.21223 0.80743 0.83512 0.85998 1.90753 1.44856 1.77644 1.31923 1.45836 1.53704 1.05356 1.31015 1.21084 0.96953 0.87809 0.93472 1.21759 1.02151 0.91973 1.00061 1.20668 0.97620 0.82800 0.96339 1.42633 1.63260 1.02510 1.31991 1.19038 1.24781 0.86780 1.06770 0.93117 1.25670 1.02334 0.95054 1.03014 1.69914 1.51085 0.99216 1.43442 0.85272 0.79193 0.77479 0.78979 1.20240 1.22456 1.16586 0.90113 0.91296 0.93986 0.86885 0.87611 0.89125 0.87233 0.85789 0.91773 0.74149 0.92232 0.92086 0.89562 0.89699 0.95961 0.95918 0.79652 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.83 8.68 127.77 1.11 2.94 16 2 N -0.59 -11.01 2.94 -831.51 -2.45 -13.46 16 3 C 0.51 10.55 7.47 87.71 0.66 11.21 16 4 O -0.60 -18.20 16.27 -3.04 -0.05 -18.25 16 5 C -0.13 -1.40 6.03 29.70 0.18 -1.22 16 6 C -0.11 -0.42 6.03 30.73 0.19 -0.23 16 7 C -0.13 -0.83 5.29 30.69 0.16 -0.67 16 8 C 0.13 1.47 3.07 44.36 0.14 1.60 16 9 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 10 C 0.50 8.99 5.96 87.66 0.52 9.51 16 11 O -0.57 -16.34 15.04 -3.01 -0.05 -16.38 16 12 N -0.71 -9.92 5.56 -463.07 -2.57 -12.49 16 13 C 0.13 2.68 5.67 86.38 0.49 3.17 16 14 C -0.12 -2.67 5.44 30.59 0.17 -2.51 16 15 C 0.15 5.30 6.26 86.38 0.54 5.84 16 16 N -0.76 -33.64 5.41 -343.44 -1.86 -35.49 16 17 C -0.24 -13.75 10.47 84.03 0.88 -12.87 16 18 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 19 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 20 N -0.99 -62.99 13.97 21.65 0.30 -62.69 16 21 Si 0.96 43.42 27.74 68.60 1.90 45.33 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.24 -9.35 6.52 99.48 0.65 -8.71 16 25 H 0.08 1.42 7.54 -2.39 -0.02 1.41 16 26 H 0.07 1.55 7.31 -2.39 -0.02 1.54 16 27 H 0.04 1.12 7.43 -2.39 -0.02 1.10 16 28 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 0.14 8.13 -2.39 -0.02 0.12 16 31 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.06 0.70 8.10 -2.38 -0.02 0.68 16 34 H 0.42 2.76 8.47 -92.71 -0.79 1.98 16 35 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.37 14.97 5.53 -92.71 -0.51 14.46 16 42 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 Total: -1.00 -84.08 341.98 0.39 -83.69 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -0.34 Total: 16.56 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 5.49 Total: 13.18 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -6.57 Total: -124.13 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.09 Total: -34.63 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.90 Total: 45.33 kcal Total: -84.08 0.39 -83.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174943372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.631 kcal (2) G-P(sol) polarization free energy of solvation -84.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds