Wall clock time and date at job start Tue Mar 31 2020 03:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00306 * 2 1 4 4 H 1.48499 * 109.47433 * 270.00193 * 3 2 1 5 5 H 1.48511 * 109.46835 * 30.00089 * 3 2 1 6 6 H 1.48501 * 109.47183 * 149.99841 * 3 2 1 7 7 C 1.38814 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00178 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99607 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9 13 13 N 1.46497 * 109.46983 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 14 19 19 N 1.46901 * 109.47859 * 179.97438 * 18 17 16 20 20 C 1.48533 * 110.99670 * 52.60024 * 19 18 17 21 21 C 1.54936 * 103.22827 * 159.72645 * 20 19 18 22 22 C 1.54602 * 102.91755 * 322.58844 * 21 20 19 23 23 C 1.47895 * 111.00585 * 169.99973 * 19 18 17 24 24 H 0.97006 * 119.99942 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00490 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.48027 * 59.99428 * 10 9 7 27 27 H 1.09002 * 109.46704 * 299.99128 * 10 9 7 28 28 H 1.09001 * 109.46812 * 59.99364 * 11 10 9 29 29 H 1.09002 * 109.46935 * 299.99706 * 11 10 9 30 30 H 1.09001 * 109.46832 * 59.99801 * 12 11 10 31 31 H 1.09002 * 109.47153 * 299.99992 * 12 11 10 32 32 H 0.96995 * 120.00423 * 359.97438 * 13 12 11 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 36 36 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 37 37 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 38 38 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 39 39 H 1.09002 * 110.67270 * 278.16471 * 20 19 18 40 40 H 1.08998 * 110.66667 * 41.29259 * 20 19 18 41 41 H 1.09002 * 110.72666 * 204.23420 * 21 20 19 42 42 H 1.08998 * 110.72369 * 80.94172 * 21 20 19 43 43 H 1.09001 * 110.30688 * 263.03605 * 22 21 20 44 44 H 1.08996 * 110.30747 * 140.87557 * 22 21 20 45 45 H 1.08994 * 109.91810 * 333.51090 * 23 19 18 46 46 H 1.08999 * 109.91451 * 94.60787 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8198 0.0001 12 6 1.8286 -6.1448 -0.0005 13 7 0.8765 -7.2582 0.0007 14 6 1.3258 -8.5289 0.0009 15 8 2.5181 -8.7507 -0.0004 16 6 0.3464 -9.6744 0.0016 17 6 1.1113 -10.9994 0.0011 18 6 0.1172 -12.1623 0.0024 19 7 0.8515 -13.4346 0.0013 20 6 1.8486 -13.4745 1.1015 21 6 2.1205 -14.9895 1.2787 22 6 0.7269 -15.6196 1.0525 23 6 -0.0607 -14.5734 0.2423 24 1 -0.4850 0.8401 -0.0004 25 1 0.3555 -2.3881 0.0002 26 1 2.6847 -3.7147 0.8893 27 1 2.6845 -3.7145 -0.8906 28 1 0.4366 -4.7621 -0.8896 29 1 0.4374 -4.7618 0.8904 30 1 2.4559 -6.2026 0.8890 31 1 2.4546 -6.2025 -0.8910 32 1 -0.0771 -7.0810 0.0021 33 1 -0.2799 -9.6163 0.8918 34 1 -0.2806 -9.6169 -0.8882 35 1 1.7374 -11.0572 -0.8893 36 1 1.7387 -11.0572 0.8906 37 1 -0.5086 -12.1043 0.8931 38 1 -0.5104 -12.1047 -0.8869 39 1 2.7604 -12.9511 0.8137 40 1 1.4315 -13.0492 2.0143 41 1 2.4809 -15.2016 2.2853 42 1 2.8300 -15.3441 0.5310 43 1 0.2364 -15.8059 2.0079 44 1 0.8182 -16.5464 0.4862 45 1 -0.9287 -14.2400 0.8110 46 1 -0.3812 -15.0000 -0.7082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176879501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:43 Heat of formation + Delta-G solvation = -67.530438 kcal Electronic energy + Delta-G solvation = -21187.796873 eV Core-core repulsion = 17917.608507 eV Total energy + Delta-G solvation = -3270.188366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81775 -39.82667 -37.55206 -35.93549 -35.30371 -33.76393 -32.11733 -31.10333 -29.80142 -27.72143 -26.37161 -24.42544 -23.28003 -22.58134 -21.74954 -21.44552 -20.93944 -19.19267 -17.99456 -17.25494 -17.14536 -16.84617 -16.69153 -16.32756 -16.27096 -15.37245 -15.30406 -15.11307 -14.90857 -14.49579 -14.12514 -13.91947 -13.61328 -13.33025 -13.26467 -12.82928 -12.76567 -12.57530 -12.43473 -12.35821 -12.23866 -12.10613 -12.07715 -12.04686 -11.95595 -11.79906 -11.61842 -11.40865 -10.95599 -10.88726 -10.08982 -9.36388 -9.02964 -7.97592 -5.26855 1.47501 1.49167 1.57781 1.66984 2.19404 2.55904 3.06187 3.36281 3.67516 3.76142 3.77290 3.85687 4.02265 4.05878 4.08566 4.20538 4.28300 4.35023 4.40000 4.52700 4.53453 4.62779 4.70224 4.71696 4.73031 4.75199 4.76865 4.89291 4.91945 4.97106 5.07418 5.13249 5.23971 5.27283 5.29329 5.30595 5.33551 5.46480 5.48070 5.95283 6.12016 6.25148 6.58946 7.28528 7.31697 8.06115 8.30380 9.25792 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.069719 B = 0.001788 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.517789 B =15654.900494 C =15908.873514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.132 3.868 13 N -0.719 5.719 14 C 0.505 3.495 15 O -0.591 6.591 16 C -0.129 4.129 17 C -0.098 4.098 18 C 0.051 3.949 19 N -0.537 5.537 20 C 0.030 3.970 21 C -0.125 4.125 22 C -0.129 4.129 23 C 0.032 3.968 24 H 0.252 0.748 25 H 0.376 0.624 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.417 0.583 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 -31.944 2.128 32.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.389 5.389 10 C 0.024 3.976 11 C -0.155 4.155 12 C 0.007 3.993 13 N -0.372 5.372 14 C 0.293 3.707 15 O -0.472 6.472 16 C -0.169 4.169 17 C -0.136 4.136 18 C -0.077 4.077 19 N -0.262 5.262 20 C -0.097 4.097 21 C -0.163 4.163 22 C -0.167 4.167 23 C -0.096 4.096 24 H 0.061 0.939 25 H 0.208 0.792 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.254 0.746 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.305 -32.033 1.619 32.157 hybrid contribution -0.589 1.491 0.692 1.746 sum -2.894 -30.543 2.311 30.766 Atomic orbital electron populations 1.69807 1.06544 1.26208 1.59236 1.25584 0.96483 1.01136 1.03404 0.85116 0.77678 0.79295 0.77509 1.21282 1.21915 1.19565 1.19661 0.91583 0.85482 1.41705 0.90769 1.42528 1.05721 1.01117 1.89562 1.20690 0.94158 0.84875 0.97890 1.21692 0.98417 0.92144 1.03275 1.21052 0.91871 0.84753 1.01593 1.45990 1.11216 1.05194 1.74791 1.21405 0.89838 0.84819 0.74598 1.90695 1.19376 1.85482 1.51626 1.21642 0.97547 0.90780 1.06920 1.21273 0.97686 0.92234 1.02424 1.22303 0.95293 0.88162 1.01899 1.64780 1.14366 1.03162 1.43880 1.23247 0.96320 0.97540 0.92620 1.22507 0.97597 0.93875 1.02326 1.22409 0.95307 0.98607 1.00413 1.22935 0.94766 0.91590 1.00280 0.93874 0.79200 0.96128 0.96120 0.90701 0.90684 0.92325 0.92336 0.74636 0.86328 0.86130 0.92592 0.92676 0.93500 0.89524 0.91123 0.93629 0.90048 0.91175 0.90644 0.90299 0.93142 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -38.11 5.60 -343.44 -1.92 -40.03 16 10 C 0.15 6.00 6.26 86.38 0.54 6.54 16 11 C -0.12 -3.44 5.44 30.60 0.17 -3.27 16 12 C 0.13 3.50 5.67 86.38 0.49 3.99 16 13 N -0.72 -14.98 5.56 -463.06 -2.57 -17.55 16 14 C 0.51 11.59 7.83 87.66 0.69 12.28 16 15 O -0.59 -19.38 15.98 -3.03 -0.05 -19.43 16 16 C -0.13 -1.74 5.70 29.85 0.17 -1.57 16 17 C -0.10 -1.65 4.16 30.59 0.13 -1.52 16 18 C 0.05 0.68 5.03 86.30 0.43 1.11 16 19 N -0.54 -8.37 5.40 -883.07 -4.76 -13.14 16 20 C 0.03 0.46 5.10 86.65 0.44 0.90 16 21 C -0.12 -1.48 7.06 31.80 0.22 -1.25 16 22 C -0.13 -1.27 6.93 31.47 0.22 -1.06 16 23 C 0.03 0.38 6.69 86.45 0.58 0.96 16 24 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 25 H 0.38 20.00 7.67 -92.71 -0.71 19.29 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.42 6.04 8.47 -92.71 -0.79 5.25 16 33 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.05 1.10 6.75 -2.39 -0.02 1.09 16 37 H 0.05 0.52 7.81 -2.39 -0.02 0.50 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.26 7.67 -2.39 -0.02 1.24 16 40 H 0.05 0.67 8.00 -2.39 -0.02 0.65 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 0.52 7.57 -2.39 -0.02 0.50 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.98 370.00 -2.17 -74.15 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.55 Total: 26.56 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.38 Total: -0.16 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -8.98 Total: -129.36 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.98 -2.17 -74.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176879501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.619 kcal (2) G-P(sol) polarization free energy of solvation -71.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds