Wall clock time and date at job start Tue Mar 31 2020 03:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00055 * 2 1 4 4 H 1.48497 * 109.47232 * 239.99981 * 3 2 1 5 5 H 1.48493 * 109.47421 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46638 * 120.00476 * 3 2 1 7 7 C 1.38809 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99681 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00396 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00099 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47109 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47125 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47369 * 180.02562 * 12 11 10 14 14 C 1.34770 * 120.00477 * 180.02562 * 13 12 11 15 15 O 1.21289 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00595 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.47487 * 179.97438 * 16 14 13 18 18 N 1.46898 * 109.46850 * 180.02562 * 17 16 14 19 19 C 1.46845 * 111.00565 * 45.79157 * 18 17 16 20 20 C 1.53034 * 109.52676 * 185.84030 * 19 18 17 21 21 C 1.53126 * 109.27454 * 300.81918 * 20 19 18 22 22 C 1.53119 * 109.16048 * 57.65518 * 21 20 19 23 23 C 1.46850 * 110.99813 * 170.00223 * 18 17 16 24 24 H 0.97000 * 119.99515 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99918 * 0.02562 * 9 7 2 26 26 H 1.09006 * 109.46917 * 60.00427 * 10 9 7 27 27 H 1.09001 * 109.47073 * 300.00937 * 10 9 7 28 28 H 1.09004 * 109.47173 * 60.00863 * 11 10 9 29 29 H 1.08995 * 109.47488 * 300.00250 * 11 10 9 30 30 H 1.08997 * 109.47155 * 60.00068 * 12 11 10 31 31 H 1.09006 * 109.47235 * 299.99948 * 12 11 10 32 32 H 0.97007 * 119.99619 * 359.97438 * 13 12 11 33 33 H 1.09006 * 109.46822 * 60.00018 * 16 14 13 34 34 H 1.08999 * 109.46918 * 300.00498 * 16 14 13 35 35 H 1.08995 * 109.46637 * 59.99964 * 17 16 14 36 36 H 1.09001 * 109.46762 * 299.99921 * 17 16 14 37 37 H 1.08995 * 109.46315 * 65.81881 * 19 18 17 38 38 H 1.09005 * 109.45975 * 305.85394 * 19 18 17 39 39 H 1.08997 * 109.50792 * 180.88024 * 20 19 18 40 40 H 1.09006 * 109.50471 * 60.75677 * 20 19 18 41 41 H 1.08999 * 109.52028 * 177.55723 * 21 20 19 42 42 H 1.08993 * 109.52259 * 297.74866 * 21 20 19 43 43 H 1.09004 * 109.50440 * 62.28501 * 22 21 20 44 44 H 1.09003 * 109.50154 * 182.40625 * 22 21 20 45 45 H 1.09005 * 109.46186 * 54.13967 * 23 18 17 46 46 H 1.08998 * 109.46012 * 294.17361 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0636 -4.8197 -0.0021 12 6 1.8286 -6.1448 -0.0026 13 7 0.8766 -7.2582 -0.0036 14 6 1.3257 -8.5289 -0.0037 15 8 2.5181 -8.7506 -0.0034 16 6 0.3464 -9.6743 -0.0041 17 6 1.1113 -10.9994 -0.0048 18 7 0.1566 -12.1159 -0.0059 19 6 -0.9116 -11.8940 -0.9887 20 6 -1.9618 -12.9998 -0.8610 21 6 -1.2970 -14.3584 -1.0999 22 6 -0.1570 -14.5437 -0.0947 23 6 0.8409 -13.3931 -0.2445 24 1 -0.4849 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.6852 -3.7150 0.8879 27 1 2.6840 -3.7141 -0.8921 28 1 0.4367 -4.7614 -0.8919 29 1 0.4373 -4.7625 0.8881 30 1 2.4552 -6.2029 0.8873 31 1 2.4552 -6.2022 -0.8927 32 1 -0.0772 -7.0809 -0.0034 33 1 -0.2800 -9.6164 -0.8943 34 1 -0.2805 -9.6167 0.8856 35 1 1.7380 -11.0575 0.8851 36 1 1.7379 -11.0567 -0.8949 37 1 -0.4894 -11.9083 -1.9934 38 1 -1.3789 -10.9265 -0.8050 39 1 -2.7466 -12.8436 -1.6011 40 1 -2.3943 -12.9772 0.1393 41 1 -2.0322 -15.1520 -0.9673 42 1 -0.8983 -14.3955 -2.1137 43 1 -0.5611 -14.5454 0.9177 44 1 0.3477 -15.4904 -0.2873 45 1 1.6465 -13.5144 0.4796 46 1 1.2549 -13.4004 -1.2528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176930065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:51 Heat of formation + Delta-G solvation = -67.129680 kcal Electronic energy + Delta-G solvation = -21527.759358 eV Core-core repulsion = 18257.588370 eV Total energy + Delta-G solvation = -3270.170987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95638 -39.77714 -37.53800 -35.92559 -35.19661 -33.77219 -32.09324 -31.56075 -30.57871 -27.18592 -25.88552 -24.42062 -23.95162 -22.73295 -22.56765 -21.05592 -20.54972 -19.19125 -18.24724 -17.17833 -17.07523 -16.61660 -16.47747 -16.27900 -15.80913 -15.33597 -15.26271 -15.22778 -15.05870 -14.51793 -14.37460 -14.21860 -13.72706 -13.53579 -13.30703 -13.05339 -12.79179 -12.72402 -12.56049 -12.43847 -12.23019 -12.10411 -12.08155 -12.04276 -11.80138 -11.56816 -11.25462 -11.16198 -10.94331 -10.90470 -10.11025 -9.30554 -9.02618 -7.97050 -5.26367 1.47521 1.50594 1.56819 1.62313 2.11718 2.55965 2.96417 3.36529 3.73628 3.76924 3.85624 3.96417 3.99941 4.07878 4.08800 4.18083 4.28749 4.34392 4.45660 4.48472 4.52833 4.65427 4.68311 4.72267 4.73481 4.79811 4.87934 4.93684 4.94881 4.96368 5.09102 5.11811 5.26053 5.27963 5.30972 5.31505 5.43358 5.47955 5.50167 6.06221 6.14595 6.25590 6.55391 7.24260 7.32047 8.06666 8.30769 9.26127 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.053128 B = 0.001953 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.897950 B =14332.324338 C =14750.154267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.132 3.868 13 N -0.717 5.717 14 C 0.510 3.490 15 O -0.590 6.590 16 C -0.132 4.132 17 C 0.076 3.924 18 N -0.541 5.541 19 C 0.040 3.960 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.113 4.113 23 C 0.052 3.948 24 H 0.253 0.747 25 H 0.376 0.624 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.417 0.583 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.028 0.972 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 -30.486 -1.535 30.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.389 5.389 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.008 3.992 13 N -0.370 5.370 14 C 0.297 3.703 15 O -0.471 6.471 16 C -0.172 4.172 17 C -0.052 4.052 18 N -0.266 5.266 19 C -0.087 4.087 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.151 4.151 23 C -0.076 4.076 24 H 0.061 0.939 25 H 0.208 0.792 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.254 0.746 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.416 -30.560 -1.076 30.896 hybrid contribution 0.294 1.328 -0.795 1.576 sum -4.122 -29.231 -1.871 29.580 Atomic orbital electron populations 1.69802 1.06530 1.26286 1.59189 1.25597 0.96502 1.01170 1.03438 0.85182 0.77220 0.78976 0.78196 1.20400 1.21889 1.20404 1.19619 0.91566 0.85473 1.41768 0.90774 1.42525 1.05728 1.01121 1.89573 1.20688 0.94150 0.84855 0.97902 1.21693 0.98429 0.92134 1.03299 1.21069 0.91817 0.84629 1.01716 1.45952 1.11290 1.05100 1.74617 1.21190 0.89595 0.84745 0.74723 1.90700 1.19206 1.85475 1.51687 1.21777 0.97763 0.90654 1.06971 1.21690 0.93506 0.89043 1.00960 1.62059 1.12368 1.01845 1.50345 1.22371 0.92889 1.00671 0.92805 1.21596 0.97227 0.93829 1.02691 1.21606 0.97924 0.97751 0.98803 1.21569 0.96250 0.96998 1.00281 1.22139 0.96766 0.89350 0.99358 0.93866 0.79198 0.96094 0.96121 0.90684 0.90679 0.92173 0.92221 0.74610 0.86399 0.85911 0.91222 0.95684 0.95408 0.88908 0.90403 0.91256 0.90856 0.92530 0.91353 0.90596 0.90970 0.95411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.98 46.17 29.55 68.60 2.03 48.19 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -38.01 5.60 -343.45 -1.92 -39.93 16 10 C 0.15 5.96 6.26 86.38 0.54 6.50 16 11 C -0.12 -3.42 5.44 30.59 0.17 -3.25 16 12 C 0.13 3.45 5.67 86.38 0.49 3.94 16 13 N -0.72 -14.79 5.56 -463.06 -2.57 -17.36 16 14 C 0.51 11.65 7.83 87.66 0.69 12.34 16 15 O -0.59 -19.01 15.98 -3.06 -0.05 -19.05 16 16 C -0.13 -1.96 4.95 29.85 0.15 -1.81 16 17 C 0.08 1.39 4.56 86.30 0.39 1.78 16 18 N -0.54 -8.33 4.81 -896.37 -4.31 -12.64 16 19 C 0.04 0.49 4.85 86.33 0.42 0.91 16 20 C -0.12 -1.18 6.09 30.65 0.19 -1.00 16 21 C -0.12 -1.23 6.00 30.68 0.18 -1.05 16 22 C -0.11 -1.26 6.09 30.65 0.19 -1.08 16 23 C 0.05 0.75 5.42 86.32 0.47 1.22 16 24 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 25 H 0.38 19.95 7.67 -92.71 -0.71 19.24 16 26 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.42 6.03 8.47 -92.70 -0.79 5.24 16 33 H 0.12 1.25 6.21 -2.38 -0.01 1.24 16 34 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 36 H 0.02 0.53 8.04 -2.39 -0.02 0.52 16 37 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.09 0.91 5.81 -2.38 -0.01 0.89 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 1.07 8.12 -2.38 -0.02 1.05 16 46 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -70.35 365.24 -1.91 -72.26 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.55 Total: 25.93 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 5.18 Total: 1.24 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -8.52 Total: -128.57 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -70.35 -1.91 -72.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176930065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.130 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds