Wall clock time and date at job start Tue Mar 31 2020 03:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45758 * 117.94208 * 2 1 4 4 C 1.52917 * 110.48729 * 199.07380 * 3 2 1 5 5 H 1.09001 * 109.60369 * 69.17303 * 4 3 2 6 6 C 1.50703 * 109.60430 * 189.49394 * 4 3 2 7 7 O 1.21273 * 119.99963 * 120.00309 * 6 4 3 8 8 N 1.34779 * 119.99944 * 300.00148 * 6 4 3 9 9 C 1.46499 * 119.99872 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.46840 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36939 * 120.00037 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00126 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99653 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99966 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99758 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46700 * 60.00563 * 17 15 13 19 19 H 1.48496 * 109.46956 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47581 * 300.00489 * 17 15 13 21 21 C 1.53344 * 108.67722 * 309.25109 * 4 3 2 22 22 C 1.53061 * 108.43565 * 67.51770 * 21 4 3 23 23 C 1.33346 * 117.94918 * 179.97438 * 2 1 3 24 24 O 1.21284 * 118.24684 * 357.74742 * 23 2 1 25 25 H 1.09004 * 109.47060 * 89.99811 * 1 2 3 26 26 H 1.09001 * 109.46992 * 209.99376 * 1 2 3 27 27 H 1.08997 * 109.47667 * 329.99283 * 1 2 3 28 28 H 1.09006 * 109.29775 * 78.76672 * 3 2 1 29 29 H 1.08998 * 109.30492 * 319.38795 * 3 2 1 30 30 H 0.97005 * 119.99680 * 359.97438 * 8 6 4 31 31 H 1.09001 * 109.46813 * 60.00258 * 9 8 6 32 32 H 1.08992 * 109.47397 * 300.00319 * 9 8 6 33 33 H 1.09002 * 109.47398 * 300.00326 * 10 9 8 34 34 H 1.09001 * 109.47194 * 60.00507 * 10 9 8 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 38 38 H 0.97001 * 119.99359 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.67446 * 187.25760 * 21 4 3 40 40 H 1.08996 * 109.67761 * 307.79663 * 21 4 3 41 41 H 1.09003 * 109.39974 * 190.98975 * 22 21 4 42 42 H 1.08997 * 109.33588 * 71.20182 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5948 1.1261 -0.4681 5 1 3.6101 0.8757 -1.5289 6 6 4.3462 2.4126 -0.2414 7 8 5.3197 2.4269 0.4816 8 7 3.9363 3.5473 -0.8423 9 6 4.6665 4.7980 -0.6215 10 6 3.9994 5.9245 -1.4133 11 6 4.7623 7.2306 -1.1833 12 7 4.1233 8.3094 -1.9409 13 6 4.6344 9.5788 -1.8885 14 1 5.5089 9.7845 -1.2891 15 6 4.0292 10.6008 -2.6069 16 7 2.9638 10.3500 -3.3379 17 14 4.7260 12.3325 -2.5349 18 1 6.1252 12.3240 -3.0326 19 1 3.9047 13.2322 -3.3841 20 1 4.7027 12.8176 -1.1316 21 6 4.2493 -0.0011 0.3396 22 6 3.5839 -1.3239 -0.0483 23 6 2.0900 -1.1779 0.0005 24 8 1.4159 -2.1853 0.0430 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8899 0.5139 28 1 2.1397 1.6998 1.0091 29 1 1.6270 1.9719 -0.6696 30 1 3.1579 3.5357 -1.4210 31 1 5.6974 4.6807 -0.9556 32 1 4.6544 5.0432 0.4404 33 1 4.0119 5.6790 -2.4753 34 1 2.9684 6.0420 -1.0797 35 1 4.7502 7.4763 -0.1213 36 1 5.7932 7.1130 -1.5171 37 1 3.3376 8.1247 -2.4790 38 1 2.5407 11.0643 -3.8395 39 1 5.3142 -0.0453 0.1117 40 1 4.1088 0.1814 1.4050 41 1 3.8943 -2.1031 0.6478 42 1 3.8883 -1.5984 -1.0582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177007532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:04 Heat of formation + Delta-G solvation = -71.617269 kcal Electronic energy + Delta-G solvation = -21742.015838 eV Core-core repulsion = 18335.817159 eV Total energy + Delta-G solvation = -3406.198678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14077 -39.74318 -36.75282 -36.11996 -34.53028 -34.34537 -32.16086 -30.69025 -29.31292 -27.57115 -25.58511 -24.90011 -23.38064 -22.33003 -21.31767 -20.41998 -19.16429 -17.77478 -17.02838 -17.00730 -16.62527 -16.12792 -15.77545 -15.69644 -14.90205 -14.75534 -14.58045 -14.04892 -13.87723 -13.65011 -13.32389 -13.08787 -13.02140 -12.68351 -12.54620 -12.22847 -12.12303 -11.80854 -11.61615 -11.40393 -11.03165 -10.96319 -10.84074 -10.67566 -10.19115 -10.05898 -10.00467 -9.74045 -9.22259 -9.17528 -8.91828 -6.98428 -5.81449 -3.10606 2.24479 2.28826 2.59398 2.93857 3.41769 3.46048 3.47125 4.03889 4.10221 4.18251 4.27694 4.55121 4.74432 4.76003 4.83692 4.88572 5.01143 5.06257 5.12617 5.21618 5.23248 5.37630 5.47722 5.52963 5.53807 5.55446 5.73115 5.88319 5.91170 5.97675 6.11588 6.25478 6.30425 6.72170 6.76400 6.97860 7.27616 7.65703 7.75215 7.97222 8.37577 9.48681 10.05206 10.39716 11.41475 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035939 B = 0.002403 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.903192 B =11651.359323 C =12269.564356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.123 3.877 4 C -0.126 4.126 5 H 0.109 0.891 6 C 0.520 3.480 7 O -0.533 6.533 8 N -0.725 5.725 9 C 0.121 3.879 10 C -0.138 4.138 11 C 0.156 3.844 12 N -0.734 5.734 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.935 5.935 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.104 4.104 22 C -0.134 4.134 23 C 0.515 3.485 24 O -0.554 6.554 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.401 0.599 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.383 0.617 38 H 0.256 0.744 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 -22.447 5.617 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C -0.001 4.001 4 C -0.147 4.147 5 H 0.127 0.873 6 C 0.305 3.695 7 O -0.409 6.409 8 N -0.376 5.376 9 C -0.002 4.002 10 C -0.176 4.176 11 C 0.028 3.972 12 N -0.378 5.378 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.142 4.142 22 C -0.174 4.174 23 C 0.304 3.696 24 O -0.433 6.433 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.235 0.765 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.217 0.783 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.941 -22.787 6.206 23.697 hybrid contribution -0.334 1.161 -0.588 1.343 sum -2.275 -21.627 5.618 22.460 Atomic orbital electron populations 1.21749 0.79022 1.03621 1.02345 1.47177 1.07684 1.05789 1.73316 1.21353 0.91055 0.85035 1.02644 1.21676 0.94894 0.94851 1.03312 0.87331 1.20158 0.84800 0.84545 0.80016 1.90734 1.27086 1.85740 1.37331 1.46138 1.32782 1.08959 1.49768 1.21403 0.96037 0.81988 1.00810 1.21950 1.00506 0.94882 1.00271 1.20517 0.94900 0.86389 0.95389 1.42328 1.34438 1.04812 1.56238 1.19197 1.09087 0.85441 1.23555 0.91133 1.24758 0.98040 0.98277 0.99934 1.69648 1.22287 1.32228 1.34181 0.86236 0.78099 0.84303 0.77370 1.21203 1.21650 1.21198 1.21501 1.01044 0.91030 1.00609 1.21699 0.90673 0.99783 1.05215 1.20263 0.91126 0.82612 0.75641 1.90722 1.66571 1.35702 1.50303 0.92322 0.89983 0.90967 0.90707 0.89713 0.76487 0.91198 0.91176 0.91263 0.91263 0.96060 0.96052 0.78306 0.93420 0.89150 0.90290 0.87590 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.24 59.85 0.61 1.12 16 2 N -0.61 -4.71 3.21 -182.85 -0.59 -5.30 16 3 C 0.12 0.74 5.47 -4.48 -0.02 0.72 16 4 C -0.13 -0.85 2.60 -91.64 -0.24 -1.09 16 5 H 0.11 0.58 8.13 -51.93 -0.42 0.16 16 6 C 0.52 5.16 7.14 -10.98 -0.08 5.08 16 7 O -0.53 -7.44 15.89 5.56 0.09 -7.35 16 8 N -0.73 -6.68 5.46 -60.30 -0.33 -7.01 16 9 C 0.12 1.44 5.67 -4.04 -0.02 1.42 16 10 C -0.14 -1.91 5.44 -26.73 -0.15 -2.06 16 11 C 0.16 2.97 6.26 -4.04 -0.03 2.94 16 12 N -0.73 -18.16 5.60 -59.91 -0.34 -18.50 16 13 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 17 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.10 -0.73 4.72 -26.52 -0.13 -0.86 16 22 C -0.13 -0.91 6.03 -28.10 -0.17 -1.08 16 23 C 0.51 4.95 7.47 -11.87 -0.09 4.86 16 24 O -0.55 -7.43 16.18 5.55 0.09 -7.34 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.68 7.13 -51.93 -0.37 0.31 16 27 H 0.07 0.35 8.01 -51.93 -0.42 -0.07 16 28 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 29 H 0.08 0.36 7.80 -51.93 -0.40 -0.04 16 30 H 0.40 2.68 8.09 -40.82 -0.33 2.35 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 9.85 7.67 -40.82 -0.31 9.54 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 40 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 41 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -35.06 347.19 -7.55 -42.61 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.86 Total: 3.98 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -0.55 Total: 3.70 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.53 Total: -57.97 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.18 Total: -14.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.06 -7.55 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177007532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.010 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds