Wall clock time and date at job start Tue Mar 31 2020 03:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45758 * 117.94208 * 2 1 4 4 C 1.52917 * 110.48729 * 199.07380 * 3 2 1 5 5 H 1.09001 * 109.60369 * 69.17303 * 4 3 2 6 6 C 1.50703 * 109.60430 * 189.49394 * 4 3 2 7 7 O 1.21273 * 119.99963 * 120.00309 * 6 4 3 8 8 N 1.34779 * 119.99944 * 300.00148 * 6 4 3 9 9 C 1.46499 * 119.99872 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.46840 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36939 * 120.00037 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00126 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99653 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99966 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99758 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46700 * 60.00563 * 17 15 13 19 19 H 1.48496 * 109.46956 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47581 * 300.00489 * 17 15 13 21 21 C 1.53344 * 108.67722 * 309.25109 * 4 3 2 22 22 C 1.53061 * 108.43565 * 67.51770 * 21 4 3 23 23 C 1.33346 * 117.94918 * 179.97438 * 2 1 3 24 24 O 1.21284 * 118.24684 * 357.74742 * 23 2 1 25 25 H 1.09004 * 109.47060 * 89.99811 * 1 2 3 26 26 H 1.09001 * 109.46992 * 209.99376 * 1 2 3 27 27 H 1.08997 * 109.47667 * 329.99283 * 1 2 3 28 28 H 1.09006 * 109.29775 * 78.76672 * 3 2 1 29 29 H 1.08998 * 109.30492 * 319.38795 * 3 2 1 30 30 H 0.97005 * 119.99680 * 359.97438 * 8 6 4 31 31 H 1.09001 * 109.46813 * 60.00258 * 9 8 6 32 32 H 1.08992 * 109.47397 * 300.00319 * 9 8 6 33 33 H 1.09002 * 109.47398 * 300.00326 * 10 9 8 34 34 H 1.09001 * 109.47194 * 60.00507 * 10 9 8 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 38 38 H 0.97001 * 119.99359 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.67446 * 187.25760 * 21 4 3 40 40 H 1.08996 * 109.67761 * 307.79663 * 21 4 3 41 41 H 1.09003 * 109.39974 * 190.98975 * 22 21 4 42 42 H 1.08997 * 109.33588 * 71.20182 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5948 1.1261 -0.4681 5 1 3.6101 0.8757 -1.5289 6 6 4.3462 2.4126 -0.2414 7 8 5.3197 2.4269 0.4816 8 7 3.9363 3.5473 -0.8423 9 6 4.6665 4.7980 -0.6215 10 6 3.9994 5.9245 -1.4133 11 6 4.7623 7.2306 -1.1833 12 7 4.1233 8.3094 -1.9409 13 6 4.6344 9.5788 -1.8885 14 1 5.5089 9.7845 -1.2891 15 6 4.0292 10.6008 -2.6069 16 7 2.9638 10.3500 -3.3379 17 14 4.7260 12.3325 -2.5349 18 1 6.1252 12.3240 -3.0326 19 1 3.9047 13.2322 -3.3841 20 1 4.7027 12.8176 -1.1316 21 6 4.2493 -0.0011 0.3396 22 6 3.5839 -1.3239 -0.0483 23 6 2.0900 -1.1779 0.0005 24 8 1.4159 -2.1853 0.0430 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8899 0.5139 28 1 2.1397 1.6998 1.0091 29 1 1.6270 1.9719 -0.6696 30 1 3.1579 3.5357 -1.4210 31 1 5.6974 4.6807 -0.9556 32 1 4.6544 5.0432 0.4404 33 1 4.0119 5.6790 -2.4753 34 1 2.9684 6.0420 -1.0797 35 1 4.7502 7.4763 -0.1213 36 1 5.7932 7.1130 -1.5171 37 1 3.3376 8.1247 -2.4790 38 1 2.5407 11.0643 -3.8395 39 1 5.3142 -0.0453 0.1117 40 1 4.1088 0.1814 1.4050 41 1 3.8943 -2.1031 0.6478 42 1 3.8883 -1.5984 -1.0582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177007532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:03 Heat of formation + Delta-G solvation = -97.669228 kcal Electronic energy + Delta-G solvation = -21743.145535 eV Core-core repulsion = 18335.817159 eV Total energy + Delta-G solvation = -3407.328376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82944 -40.56906 -37.67009 -37.26674 -35.93262 -35.00283 -33.77296 -31.80178 -30.55084 -28.14457 -27.01334 -25.62629 -24.66948 -23.44277 -22.55015 -21.31708 -19.78291 -19.19647 -18.34538 -17.69989 -17.34511 -17.02735 -16.73603 -16.63056 -16.30274 -15.77485 -15.34937 -15.24677 -15.13824 -14.75254 -14.53267 -14.29889 -13.74082 -13.61650 -13.30080 -13.24281 -12.87872 -12.79539 -12.73292 -12.60467 -12.40588 -12.25941 -12.08929 -12.01006 -11.94855 -11.78268 -10.92637 -10.91528 -10.78937 -10.09838 -9.81449 -9.00724 -7.96144 -5.24856 1.48610 1.51158 1.51481 1.56211 1.57345 1.95039 2.16349 2.57047 3.37882 3.43786 3.51995 3.63511 3.69752 3.80020 4.12830 4.18294 4.22039 4.31963 4.33858 4.40724 4.47751 4.53731 4.62097 4.72169 4.77177 4.77526 4.86295 4.93127 4.94885 5.00889 5.17647 5.30927 5.33597 5.35067 5.44246 5.49732 6.26972 6.34398 6.53787 7.06582 7.21604 7.33563 8.09014 8.32221 9.27118 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.035939 B = 0.002403 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.903192 B =11651.359323 C =12269.564356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.603 5.603 3 C 0.122 3.878 4 C -0.115 4.115 5 H 0.132 0.868 6 C 0.524 3.476 7 O -0.575 6.575 8 N -0.714 5.714 9 C 0.133 3.867 10 C -0.119 4.119 11 C 0.150 3.850 12 N -0.747 5.747 13 C -0.250 4.250 14 H 0.074 0.926 15 C -0.074 4.074 16 N -0.968 5.968 17 Si 0.973 3.027 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.278 1.278 21 C -0.099 4.099 22 C -0.125 4.125 23 C 0.507 3.493 24 O -0.600 6.600 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.021 0.979 36 H 0.021 0.979 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -22.478 5.446 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C -0.001 4.001 4 C -0.137 4.137 5 H 0.150 0.850 6 C 0.310 3.690 7 O -0.454 6.454 8 N -0.366 5.366 9 C 0.008 3.992 10 C -0.157 4.157 11 C 0.024 3.976 12 N -0.390 5.390 13 C -0.382 4.382 14 H 0.092 0.908 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.802 3.198 18 H -0.204 1.204 19 H -0.220 1.220 20 H -0.204 1.204 21 C -0.137 4.137 22 C -0.165 4.165 23 C 0.297 3.703 24 O -0.483 6.483 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.819 -22.814 6.043 23.671 hybrid contribution -0.347 1.148 -0.490 1.295 sum -2.166 -21.666 5.554 22.471 Atomic orbital electron populations 1.21838 0.78514 1.03770 1.02934 1.47263 1.08221 1.05921 1.72076 1.21476 0.90671 0.84526 1.03387 1.21625 0.94701 0.92735 1.04633 0.85037 1.20597 0.84224 0.85247 0.78917 1.90726 1.29114 1.86377 1.39209 1.45964 1.32947 1.07910 1.49800 1.21090 0.95697 0.82472 0.99937 1.21705 1.00171 0.92868 1.00947 1.20698 0.95185 0.87318 0.94439 1.42541 1.34431 1.05318 1.56725 1.19604 1.08889 0.86890 1.22775 0.90778 1.25567 0.98743 1.02109 1.00271 1.69792 1.23686 1.33050 1.35349 0.85219 0.77472 0.79676 0.77447 1.20427 1.22022 1.20394 1.21437 1.00971 0.91257 1.00076 1.21670 0.88720 0.99715 1.06362 1.20751 0.92068 0.82488 0.74970 1.90703 1.67632 1.37251 1.52687 0.91513 0.91920 0.88738 0.90754 0.87084 0.74643 0.91984 0.91810 0.90731 0.90525 0.96068 0.96146 0.79193 0.93895 0.89341 0.91353 0.87244 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 10.24 127.77 1.31 2.17 16 2 N -0.60 -8.26 3.21 -851.60 -2.73 -10.99 16 3 C 0.12 1.14 5.47 86.49 0.47 1.61 16 4 C -0.12 -1.26 2.60 -11.45 -0.03 -1.29 16 5 H 0.13 0.91 8.13 -2.39 -0.02 0.89 16 6 C 0.52 9.26 7.14 87.66 0.63 9.88 16 7 O -0.58 -15.40 15.89 -3.01 -0.05 -15.45 16 8 N -0.71 -11.28 5.46 -463.07 -2.53 -13.81 16 9 C 0.13 2.91 5.67 86.38 0.49 3.40 16 10 C -0.12 -3.07 5.44 30.59 0.17 -2.90 16 11 C 0.15 5.57 6.26 86.38 0.54 6.11 16 12 N -0.75 -36.62 5.60 -343.46 -1.92 -38.55 16 13 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 14 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 16 N -0.97 -57.90 13.06 21.65 0.28 -57.62 16 17 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 C -0.10 -1.24 4.72 30.73 0.14 -1.09 16 22 C -0.13 -1.51 6.03 29.71 0.18 -1.34 16 23 C 0.51 9.22 7.47 87.72 0.66 9.88 16 24 O -0.60 -16.11 16.18 -3.04 -0.05 -16.16 16 25 H 0.07 0.70 8.14 -2.38 -0.02 0.69 16 26 H 0.06 1.02 7.13 -2.39 -0.02 1.01 16 27 H 0.09 0.69 8.01 -2.39 -0.02 0.67 16 28 H 0.07 0.76 8.11 -2.38 -0.02 0.74 16 29 H 0.11 0.50 7.80 -2.39 -0.02 0.48 16 30 H 0.42 4.10 8.09 -92.70 -0.75 3.35 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.38 19.24 7.67 -92.71 -0.71 18.53 16 38 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.09 1.18 7.89 -2.39 -0.02 1.16 16 40 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -75.71 347.19 0.45 -75.26 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.44 Total: 20.21 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.86 Total: 9.78 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -6.90 Total: -120.97 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.10 Total: -31.61 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -75.71 0.45 -75.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177007532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.407 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds