Wall clock time and date at job start Tue Mar 31 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.34777 * 119.99873 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99754 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00137 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47303 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46926 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00486 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99764 * 180.02562 * 8 7 6 11 11 C 1.47025 * 125.64998 * 0.02562 * 10 8 7 12 12 C 1.54324 * 107.27129 * 181.02615 * 11 10 8 13 13 C 1.55153 * 102.94474 * 22.19066 * 12 11 10 14 14 H 1.09006 * 111.00423 * 82.57134 * 13 12 11 15 15 N 1.46495 * 111.00568 * 206.38230 * 13 12 11 16 16 C 1.36932 * 120.00394 * 273.55140 * 15 13 12 17 17 H 1.08003 * 120.00004 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99990 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99868 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47502 * 89.99952 * 20 18 16 22 22 H 1.48500 * 109.47104 * 210.00399 * 20 18 16 23 23 H 1.48500 * 109.46999 * 329.99648 * 20 18 16 24 24 C 1.47429 * 125.65030 * 179.71392 * 10 8 7 25 25 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 27 27 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 30 30 H 0.96999 * 120.00080 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.46978 * 300.00347 * 6 4 3 32 32 H 1.08996 * 109.47197 * 59.99985 * 6 4 3 33 33 H 1.09000 * 109.46986 * 299.99851 * 7 6 4 34 34 H 1.08996 * 109.47407 * 59.99623 * 7 6 4 35 35 H 1.09005 * 109.87955 * 300.44166 * 11 10 8 36 36 H 1.08996 * 109.88146 * 61.60663 * 11 10 8 37 37 H 1.09002 * 110.72056 * 140.55707 * 12 11 10 38 38 H 1.09001 * 110.71552 * 263.82652 * 12 11 10 39 39 H 0.97003 * 119.99539 * 93.54827 * 15 13 12 40 40 H 0.97001 * 119.99186 * 179.97438 * 19 18 16 41 41 H 1.09002 * 110.36324 * 274.74276 * 24 10 8 42 42 H 1.08998 * 110.36216 * 37.06141 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8458 3.0483 0.0011 7 6 5.3758 3.0483 0.0010 8 6 5.8781 4.4691 0.0022 9 8 5.0900 5.3910 0.0026 10 7 7.2032 4.7154 0.0018 11 6 8.2639 3.6974 -0.0003 12 6 9.6148 4.4431 0.0264 13 6 9.2354 5.8285 0.6130 14 1 9.1875 5.7920 1.7014 15 7 10.1719 6.8624 0.1659 16 6 11.3308 7.0835 0.8609 17 1 11.5543 6.4959 1.7391 18 6 12.2184 8.0629 0.4368 19 7 11.9463 8.7787 -0.6337 20 14 13.7990 8.3650 1.3854 21 1 14.8770 7.5023 0.8389 22 1 14.1911 9.7911 1.2526 23 1 13.5853 8.0420 2.8190 24 6 7.8291 6.0502 -0.0031 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.3880 2.1185 0.0004 31 1 3.4827 3.5624 -0.8888 32 1 3.4822 3.5619 0.8911 33 1 5.7392 2.5341 0.8907 34 1 5.7391 2.5348 -0.8892 35 1 8.1723 3.0647 0.8826 36 1 8.1934 3.0904 -0.9029 37 1 10.3253 3.9310 0.6752 38 1 10.0172 4.5481 -0.9812 39 1 9.9710 7.3904 -0.6227 40 1 12.5664 9.4633 -0.9298 41 1 7.9140 6.4255 -1.0230 42 1 7.2515 6.7421 0.6098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181580024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:27 Heat of formation + Delta-G solvation = -70.294550 kcal Electronic energy + Delta-G solvation = -21696.911612 eV Core-core repulsion = 18290.770291 eV Total energy + Delta-G solvation = -3406.141321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.23707 -39.53443 -37.33895 -35.66356 -34.13880 -33.06360 -31.52894 -30.79771 -29.52929 -28.00967 -25.72855 -23.65814 -23.00679 -22.44460 -20.70196 -20.07822 -18.92524 -17.68796 -17.32036 -16.48044 -16.46362 -16.13823 -15.87975 -15.19842 -14.89092 -14.44606 -14.10336 -13.78842 -13.45136 -13.20612 -13.05428 -12.97882 -12.66508 -12.41545 -12.28384 -12.05885 -11.96025 -11.87332 -11.58164 -11.34897 -11.15307 -10.86022 -10.68271 -10.31130 -10.12188 -10.05548 -9.79075 -9.67608 -9.43297 -8.96575 -8.41161 -7.05528 -5.83060 -3.13607 2.38711 2.75852 2.76680 3.25217 3.40739 3.46353 3.47850 4.34582 4.54151 4.54588 4.64184 4.72368 4.87897 4.89705 4.91734 5.07309 5.29689 5.35663 5.37845 5.43194 5.45989 5.57408 5.59511 5.64067 5.67269 5.76059 5.76926 5.98967 6.08645 6.15187 6.24067 6.39026 6.55526 6.61306 6.91744 7.13938 7.64880 7.72602 7.92648 8.28577 8.34582 9.46026 10.00111 10.35065 11.39164 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.058479 B = 0.002424 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.690786 B =11548.165707 C =11819.987202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.735 5.735 4 C 0.513 3.487 5 O -0.541 6.541 6 C -0.124 4.124 7 C -0.119 4.119 8 C 0.525 3.475 9 O -0.552 6.552 10 N -0.612 5.612 11 C 0.100 3.900 12 C -0.155 4.155 13 C 0.171 3.829 14 H 0.063 0.937 15 N -0.715 5.715 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.099 3.901 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.402 0.598 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.069 0.931 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.645 -16.362 0.676 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.388 5.388 4 C 0.300 3.700 5 O -0.418 6.418 6 C -0.165 4.165 7 C -0.160 4.160 8 C 0.314 3.686 9 O -0.431 6.431 10 N -0.346 5.346 11 C -0.023 4.023 12 C -0.197 4.197 13 C 0.059 3.941 14 H 0.081 0.919 15 N -0.356 5.356 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.024 4.024 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.236 0.764 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.414 -16.533 0.798 26.282 hybrid contribution 0.591 0.593 0.136 0.848 sum -19.824 -15.940 0.934 25.455 Atomic orbital electron populations 1.22010 0.94425 1.03259 1.02610 1.21299 0.94241 0.83120 1.02425 1.46087 1.07347 1.08987 1.76405 1.20806 0.82081 0.91798 0.75277 1.90714 1.55258 1.46678 1.49154 1.21376 0.96042 0.93061 1.05998 1.21318 0.94829 0.94059 1.05762 1.20225 0.80815 0.91246 0.76299 1.90688 1.54459 1.46736 1.51192 1.48467 1.04880 1.09096 1.72127 1.22137 0.88030 0.91154 1.01010 1.23420 0.94101 0.99083 1.03054 1.21347 0.87343 0.88509 0.96853 0.91882 1.42257 1.20370 1.39839 1.33114 1.19209 0.95864 1.15079 1.07324 0.90964 1.24780 0.99158 0.98709 0.98089 1.69667 1.37473 1.25289 1.25356 0.86158 0.83446 0.77168 0.79196 1.21643 1.21727 1.20687 1.22575 0.94609 0.83699 1.01545 0.90794 0.91908 0.91914 0.91518 0.91515 0.76351 0.87996 0.87972 0.88255 0.88284 0.91687 0.91859 0.90678 0.90528 0.77939 0.93362 0.91310 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 10.03 37.16 0.37 -0.24 16 2 C 0.11 0.73 6.39 -4.04 -0.03 0.70 16 3 N -0.73 -5.21 5.56 -60.29 -0.33 -5.55 16 4 C 0.51 5.17 7.83 -10.99 -0.09 5.09 16 5 O -0.54 -7.42 15.98 5.55 0.09 -7.34 16 6 C -0.12 -1.19 4.99 -27.88 -0.14 -1.32 16 7 C -0.12 -1.35 4.18 -27.88 -0.12 -1.47 16 8 C 0.53 7.81 7.85 -10.99 -0.09 7.73 16 9 O -0.55 -9.82 16.24 5.55 0.09 -9.73 16 10 N -0.61 -9.41 3.33 -170.37 -0.57 -9.97 16 11 C 0.10 1.34 6.48 -3.06 -0.02 1.32 16 12 C -0.16 -2.54 6.64 -24.90 -0.17 -2.70 16 13 C 0.17 3.30 3.70 -65.67 -0.24 3.06 16 14 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 15 N -0.72 -17.40 5.28 -51.24 -0.27 -17.67 16 16 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 20 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.10 1.75 6.53 -2.41 -0.02 1.74 16 25 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.40 1.82 8.47 -40.82 -0.35 1.47 16 31 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 33 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 34 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.39 10.02 7.71 -40.82 -0.31 9.70 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 42 H 0.08 1.41 8.03 -51.93 -0.42 1.00 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -33.37 352.59 -7.70 -41.07 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.95 Total: 7.03 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.77 Total: 6.77 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.45 Total: -60.08 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.18 Total: -17.07 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.37 -7.70 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181580024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.225 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds