Wall clock time and date at job start Tue Mar 31 2020 02:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.34777 * 119.99873 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99754 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00137 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47303 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46926 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00486 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99764 * 180.02562 * 8 7 6 11 11 C 1.47025 * 125.64998 * 0.02562 * 10 8 7 12 12 C 1.54324 * 107.27129 * 181.02615 * 11 10 8 13 13 C 1.55153 * 102.94474 * 22.19066 * 12 11 10 14 14 H 1.09006 * 111.00423 * 82.57134 * 13 12 11 15 15 N 1.46495 * 111.00568 * 206.38230 * 13 12 11 16 16 C 1.36932 * 120.00394 * 273.55140 * 15 13 12 17 17 H 1.08003 * 120.00004 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99990 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99868 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47502 * 89.99952 * 20 18 16 22 22 H 1.48500 * 109.47104 * 210.00399 * 20 18 16 23 23 H 1.48500 * 109.46999 * 329.99648 * 20 18 16 24 24 C 1.47429 * 125.65030 * 179.71392 * 10 8 7 25 25 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 27 27 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 30 30 H 0.96999 * 120.00080 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.46978 * 300.00347 * 6 4 3 32 32 H 1.08996 * 109.47197 * 59.99985 * 6 4 3 33 33 H 1.09000 * 109.46986 * 299.99851 * 7 6 4 34 34 H 1.08996 * 109.47407 * 59.99623 * 7 6 4 35 35 H 1.09005 * 109.87955 * 300.44166 * 11 10 8 36 36 H 1.08996 * 109.88146 * 61.60663 * 11 10 8 37 37 H 1.09002 * 110.72056 * 140.55707 * 12 11 10 38 38 H 1.09001 * 110.71552 * 263.82652 * 12 11 10 39 39 H 0.97003 * 119.99539 * 93.54827 * 15 13 12 40 40 H 0.97001 * 119.99186 * 179.97438 * 19 18 16 41 41 H 1.09002 * 110.36324 * 274.74276 * 24 10 8 42 42 H 1.08998 * 110.36216 * 37.06141 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8458 3.0483 0.0011 7 6 5.3758 3.0483 0.0010 8 6 5.8781 4.4691 0.0022 9 8 5.0900 5.3910 0.0026 10 7 7.2032 4.7154 0.0018 11 6 8.2639 3.6974 -0.0003 12 6 9.6148 4.4431 0.0264 13 6 9.2354 5.8285 0.6130 14 1 9.1875 5.7920 1.7014 15 7 10.1719 6.8624 0.1659 16 6 11.3308 7.0835 0.8609 17 1 11.5543 6.4959 1.7391 18 6 12.2184 8.0629 0.4368 19 7 11.9463 8.7787 -0.6337 20 14 13.7990 8.3650 1.3854 21 1 14.8770 7.5023 0.8389 22 1 14.1911 9.7911 1.2526 23 1 13.5853 8.0420 2.8190 24 6 7.8291 6.0502 -0.0031 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.3880 2.1185 0.0004 31 1 3.4827 3.5624 -0.8888 32 1 3.4822 3.5619 0.8911 33 1 5.7392 2.5341 0.8907 34 1 5.7391 2.5348 -0.8892 35 1 8.1723 3.0647 0.8826 36 1 8.1934 3.0904 -0.9029 37 1 10.3253 3.9310 0.6752 38 1 10.0172 4.5481 -0.9812 39 1 9.9710 7.3904 -0.6227 40 1 12.5664 9.4633 -0.9298 41 1 7.9140 6.4255 -1.0230 42 1 7.2515 6.7421 0.6098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181580024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:26 Heat of formation + Delta-G solvation = -94.516575 kcal Electronic energy + Delta-G solvation = -21697.961958 eV Core-core repulsion = 18290.770291 eV Total energy + Delta-G solvation = -3407.191667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27101 -40.54061 -38.71294 -36.31113 -35.92782 -34.03229 -33.22375 -31.44863 -30.97548 -29.46254 -26.82861 -25.35738 -24.07778 -23.28778 -21.66109 -21.42053 -20.08923 -19.28127 -18.65788 -17.58711 -17.43063 -16.94180 -16.87760 -16.38227 -16.24581 -15.69027 -15.42518 -15.05517 -14.69813 -14.55062 -14.29101 -13.94843 -13.72185 -13.34182 -13.30191 -13.12196 -13.01327 -12.89863 -12.67733 -12.64966 -12.37142 -12.31598 -12.18960 -12.11354 -11.75565 -11.60887 -10.95114 -10.94577 -10.93402 -10.08713 -9.68161 -9.05003 -7.95137 -5.25305 1.49516 1.50891 1.58132 1.59248 1.61613 1.83717 2.33000 2.57603 3.34675 3.46839 3.71418 3.76896 3.95659 4.01539 4.09216 4.14159 4.22633 4.24250 4.27371 4.35261 4.51840 4.53543 4.60816 4.73286 4.83216 4.86288 4.94284 4.97623 5.01475 5.07084 5.21534 5.24782 5.27742 5.42642 5.49112 5.54174 6.25674 6.51263 6.54771 7.08455 7.23741 7.32410 8.03901 8.28039 9.28173 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.058479 B = 0.002424 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.690786 B =11548.165707 C =11819.987202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.722 5.722 4 C 0.515 3.485 5 O -0.581 6.581 6 C -0.119 4.119 7 C -0.109 4.109 8 C 0.525 3.475 9 O -0.584 6.584 10 N -0.614 5.614 11 C 0.107 3.893 12 C -0.145 4.145 13 C 0.164 3.836 14 H 0.062 0.938 15 N -0.730 5.730 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.975 3.025 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.268 1.268 24 C 0.108 3.892 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.416 0.584 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.058 0.942 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.713 -18.238 1.470 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.375 5.375 4 C 0.302 3.698 5 O -0.461 6.461 6 C -0.159 4.159 7 C -0.149 4.149 8 C 0.316 3.684 9 O -0.465 6.465 10 N -0.348 5.348 11 C -0.016 4.016 12 C -0.186 4.186 13 C 0.055 3.945 14 H 0.079 0.921 15 N -0.369 5.369 16 C -0.371 4.371 17 H 0.099 0.901 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.804 3.196 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.016 4.016 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.253 0.747 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.543 -18.462 1.620 28.418 hybrid contribution 0.809 1.133 -0.096 1.395 sum -20.735 -17.329 1.523 27.066 Atomic orbital electron populations 1.21961 0.92075 1.04134 1.03274 1.21384 0.96118 0.82419 1.01499 1.46041 1.06742 1.09967 1.74759 1.20844 0.82692 0.91398 0.74834 1.90699 1.56387 1.47671 1.51375 1.21330 0.94920 0.92921 1.06730 1.21289 0.95947 0.91153 1.06556 1.20866 0.80099 0.92389 0.75079 1.90674 1.55155 1.48115 1.52566 1.48539 1.05645 1.08305 1.72265 1.22214 0.85366 0.90467 1.03516 1.23219 0.96130 0.97218 1.02047 1.21502 0.87289 0.88906 0.96847 0.92052 1.42411 1.20745 1.41106 1.32662 1.19603 0.96285 1.14175 1.07057 0.90114 1.25593 1.02570 0.99246 0.99374 1.69826 1.38580 1.26280 1.27280 0.85121 0.79664 0.76350 0.78487 1.21320 1.22525 1.19324 1.22252 0.93799 0.85115 1.00422 0.89860 0.91204 0.91223 0.92497 0.92475 0.74709 0.87315 0.87242 0.87309 0.87431 0.89015 0.89510 0.89749 0.91915 0.79368 0.94023 0.92406 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 10.03 71.98 0.72 -0.10 16 2 C 0.11 1.25 6.39 86.38 0.55 1.80 16 3 N -0.72 -8.89 5.56 -463.04 -2.57 -11.47 16 4 C 0.51 9.49 7.83 87.66 0.69 10.17 16 5 O -0.58 -15.17 15.98 -3.04 -0.05 -15.21 16 6 C -0.12 -2.02 4.99 29.85 0.15 -1.87 16 7 C -0.11 -2.22 4.18 29.85 0.12 -2.10 16 8 C 0.52 14.77 7.85 87.66 0.69 15.46 16 9 O -0.58 -20.30 16.24 -3.04 -0.05 -20.35 16 10 N -0.61 -17.94 3.33 -811.33 -2.70 -20.64 16 11 C 0.11 2.56 6.48 86.73 0.56 3.12 16 12 C -0.15 -4.52 6.64 31.78 0.21 -4.31 16 13 C 0.16 6.29 3.70 46.46 0.17 6.46 16 14 H 0.06 2.37 8.13 -2.38 -0.02 2.35 16 15 N -0.73 -35.94 5.28 -316.02 -1.67 -37.61 16 16 C -0.24 -12.91 9.98 84.04 0.84 -12.07 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 18 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 19 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 20 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.11 3.84 6.53 86.93 0.57 4.41 16 25 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 27 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.42 2.79 8.47 -92.71 -0.79 2.00 16 31 H 0.11 1.72 8.10 -2.39 -0.02 1.71 16 32 H 0.11 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.11 2.06 8.10 -2.39 -0.02 2.04 16 34 H 0.11 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.37 20.00 7.71 -92.71 -0.72 19.29 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.06 2.17 8.01 -2.39 -0.02 2.15 16 42 H 0.06 2.38 8.03 -2.39 -0.02 2.36 16 Total: -1.00 -72.33 352.59 0.53 -71.80 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -0.48 Total: 27.37 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 5.74 Total: 17.18 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.66 Total: -128.22 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.10 Total: -35.56 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -72.33 0.53 -71.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181580024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.718 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds