Wall clock time and date at job start Tue Mar 31 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21278 * 120.00050 * 2 1 4 4 N 1.34779 * 120.00102 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00110 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46710 * 54.81691 * 5 4 2 7 7 C 1.52997 * 109.47002 * 294.82070 * 5 4 2 8 8 C 1.50695 * 109.47252 * 174.81711 * 5 4 2 9 9 O 1.21283 * 120.00001 * 134.10745 * 8 5 4 10 10 N 1.34781 * 119.99941 * 314.11528 * 8 5 4 11 11 C 1.47428 * 125.64629 * 184.29908 * 10 8 5 12 12 C 1.55135 * 104.72104 * 155.81336 * 11 10 8 13 13 C 1.55159 * 101.48471 * 37.29476 * 12 11 10 14 14 H 1.08999 * 110.72017 * 82.69723 * 13 12 11 15 15 N 1.46497 * 110.71962 * 205.97053 * 13 12 11 16 16 C 1.36936 * 119.99789 * 268.52424 * 15 13 12 17 17 H 1.07999 * 120.00135 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00180 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00477 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99719 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47134 * 90.00474 * 20 18 16 22 22 H 1.48500 * 109.46754 * 210.00107 * 20 18 16 23 23 H 1.48496 * 109.47071 * 329.99956 * 20 18 16 24 24 C 1.47022 * 125.65088 * 4.60055 * 10 8 5 25 25 H 1.09007 * 109.47223 * 239.99401 * 1 2 3 26 26 H 1.09002 * 109.47397 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47367 * 119.99581 * 1 2 3 28 28 H 0.96997 * 120.00034 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.47470 * 300.00100 * 6 5 4 30 30 H 1.09000 * 109.47469 * 60.00599 * 6 5 4 31 31 H 1.09002 * 109.46598 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.46944 * 180.02562 * 7 5 4 33 33 H 1.09006 * 109.47007 * 299.99745 * 7 5 4 34 34 H 1.08997 * 109.47236 * 59.99864 * 7 5 4 35 35 H 1.09002 * 110.36577 * 274.74122 * 11 10 8 36 36 H 1.08997 * 110.36861 * 37.06314 * 11 10 8 37 37 H 1.08997 * 111.18948 * 279.18920 * 12 11 10 38 38 H 1.09000 * 110.93800 * 155.28831 * 12 11 10 39 39 H 0.97000 * 120.00658 * 88.51744 * 15 13 12 40 40 H 0.96994 * 120.00397 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.88247 * 300.44408 * 24 10 8 42 42 H 1.08996 * 109.88144 * 61.45128 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1562 -0.3363 1.1779 7 6 4.1553 -0.5614 -1.3104 8 6 4.1483 -2.5822 0.1267 9 8 5.0394 -2.9768 -0.5952 10 7 3.6072 -3.4092 1.0432 11 6 4.0599 -4.7814 1.3358 12 6 3.5901 -5.0500 2.7897 13 6 2.2181 -4.3257 2.8097 14 1 1.4401 -4.9617 2.3873 15 7 1.8696 -3.9132 4.1715 16 6 1.1353 -4.7465 4.9725 17 1 0.8126 -5.7076 4.6002 18 6 0.8055 -4.3559 6.2631 19 7 0.1001 -5.1569 7.0332 20 14 1.3641 -2.6938 6.9074 21 1 0.3317 -1.6715 6.6005 22 1 1.5604 -2.7733 8.3772 23 1 2.6442 -2.3155 6.2568 24 6 2.4640 -3.0946 1.9124 25 1 -0.3634 -0.5140 0.8900 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.6959 -2.0072 -0.0005 29 1 3.7929 0.6872 1.0855 30 1 3.7933 -0.7679 2.1107 31 1 5.2463 -0.3367 1.1777 32 1 5.2454 -0.5618 -1.3110 33 1 3.7917 -1.1534 -2.1504 34 1 3.7920 0.4621 -1.4028 35 1 3.5962 -5.4886 0.6480 36 1 5.1461 -4.8445 1.2707 37 1 4.2756 -4.6085 3.5131 38 1 3.4706 -6.1184 2.9693 39 1 2.1591 -3.0499 4.5059 40 1 -0.1300 -4.8842 7.9351 41 1 2.6953 -2.2263 2.5295 42 1 1.5813 -2.8931 1.3055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186383982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:50 Heat of formation + Delta-G solvation = -43.160154 kcal Electronic energy + Delta-G solvation = -23723.314921 eV Core-core repulsion = 20318.350236 eV Total energy + Delta-G solvation = -3404.964685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.02897 -39.34415 -37.70271 -35.65385 -34.33029 -32.31546 -31.69810 -30.16370 -29.14331 -28.17885 -27.32986 -24.73103 -23.36262 -22.06218 -20.43953 -20.17260 -19.60555 -18.01797 -17.58340 -16.87210 -16.08923 -15.83264 -15.36469 -15.01139 -14.68838 -14.14901 -14.14296 -13.72122 -13.35109 -13.24994 -13.00397 -12.82903 -12.67202 -12.59602 -12.32571 -12.23915 -12.02549 -11.87498 -11.81103 -11.54523 -11.36086 -10.99211 -10.87099 -10.61308 -10.25235 -10.19043 -9.74805 -9.53928 -9.34038 -9.10292 -8.67943 -7.47540 -5.92158 -3.30768 2.25797 2.47116 2.84486 3.13502 3.26826 3.29309 3.36447 4.17192 4.45045 4.60113 4.76205 4.82002 4.84360 5.02558 5.06452 5.11140 5.22150 5.31213 5.39539 5.45485 5.51191 5.59097 5.62713 5.69556 5.73084 5.74892 5.80575 5.93215 6.07070 6.11855 6.16535 6.19275 6.30619 6.44704 6.64948 7.24863 7.42557 7.80509 7.95455 8.05903 8.25690 9.01547 9.73948 9.90944 11.25332 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.005520 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.017781 B = 5071.152952 C = 6012.053501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.517 3.483 3 O -0.540 6.540 4 N -0.727 5.727 5 C 0.165 3.835 6 C -0.167 4.167 7 C -0.144 4.144 8 C 0.529 3.471 9 O -0.533 6.533 10 N -0.610 5.610 11 C 0.104 3.896 12 C -0.155 4.155 13 C 0.177 3.823 14 H 0.078 0.922 15 N -0.738 5.738 16 C -0.253 4.253 17 H 0.093 0.907 18 C 0.012 3.988 19 N -0.928 5.928 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.277 1.277 24 C 0.086 3.914 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.404 0.596 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.363 0.637 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 7.037 -14.839 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.305 3.695 3 O -0.417 6.417 4 N -0.385 5.385 5 C 0.076 3.924 6 C -0.225 4.225 7 C -0.202 4.202 8 C 0.316 3.684 9 O -0.409 6.409 10 N -0.344 5.344 11 C -0.018 4.018 12 C -0.196 4.196 13 C 0.066 3.934 14 H 0.096 0.904 15 N -0.380 5.380 16 C -0.383 4.383 17 H 0.111 0.889 18 C -0.185 4.185 19 N -0.574 5.574 20 Si 0.712 3.288 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.039 4.039 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.243 0.757 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.196 0.804 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.149 7.422 -15.153 17.376 hybrid contribution 0.102 0.600 0.753 0.968 sum 4.251 8.022 -14.401 17.023 Atomic orbital electron populations 1.21965 0.91302 1.05743 1.04681 1.20816 0.90631 0.83175 0.74862 1.90647 1.70489 1.31453 1.49132 1.46515 1.06067 1.09573 1.76334 1.20524 0.80599 0.92467 0.98853 1.22295 1.01698 1.02536 0.95977 1.21977 1.02153 1.01746 0.94317 1.20183 0.82789 0.86113 0.79334 1.90709 1.31004 1.76032 1.43169 1.48553 1.33097 1.15505 1.37249 1.22386 1.00129 0.82031 0.97240 1.23596 0.99921 1.02477 0.93576 1.21167 0.94649 0.91932 0.85678 0.90389 1.42696 1.65050 1.19958 1.10279 1.19021 1.25602 0.99599 0.94031 0.88922 1.24664 0.99614 0.97749 0.96475 1.69684 1.42319 1.36491 1.08943 0.86612 0.78507 0.85132 0.78582 1.20885 1.21551 1.20338 1.22706 0.87456 1.00674 0.93016 0.88826 0.88800 0.89358 0.75744 0.88396 0.91766 0.91357 0.90816 0.92231 0.90264 0.91362 0.90886 0.90753 0.89891 0.80384 0.92819 0.90895 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 10.32 36.00 0.37 -0.99 16 2 C 0.52 5.75 7.36 -10.99 -0.08 5.67 16 3 O -0.54 -7.73 13.32 5.56 0.07 -7.65 16 4 N -0.73 -7.73 3.99 -48.69 -0.19 -7.93 16 5 C 0.16 2.04 0.66 -132.97 -0.09 1.96 16 6 C -0.17 -2.12 8.25 37.16 0.31 -1.81 16 7 C -0.14 -1.74 7.87 37.16 0.29 -1.45 16 8 C 0.53 7.50 6.65 -10.99 -0.07 7.42 16 9 O -0.53 -9.03 16.28 5.55 0.09 -8.94 16 10 N -0.61 -8.16 3.30 -170.38 -0.56 -8.72 16 11 C 0.10 1.38 6.90 -2.40 -0.02 1.36 16 12 C -0.15 -2.29 6.78 -24.46 -0.17 -2.46 16 13 C 0.18 2.85 3.61 -66.10 -0.24 2.61 16 14 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 15 N -0.74 -15.35 5.03 -51.65 -0.26 -15.61 16 16 C -0.25 -6.49 10.44 -15.06 -0.16 -6.64 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 18 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 19 N -0.93 -27.56 13.97 55.49 0.78 -26.79 16 20 Si 0.88 20.77 27.74 -169.99 -4.71 16.06 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 24 C 0.09 1.13 5.24 -3.07 -0.02 1.11 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.40 3.74 5.74 -40.82 -0.23 3.50 16 29 H 0.10 1.32 5.81 -51.93 -0.30 1.02 16 30 H 0.06 0.83 6.12 -51.93 -0.32 0.52 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.90 7.95 -51.93 -0.41 0.49 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.99 6.56 -51.93 -0.34 0.65 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.36 7.55 5.43 -40.82 -0.22 7.33 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 1.02 5.82 -51.93 -0.30 0.72 16 42 H 0.07 0.74 5.65 -51.93 -0.29 0.45 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -31.63 330.67 -6.01 -37.64 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.24 Total: 9.95 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 0.04 Total: 7.01 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.24 Total: -59.05 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.16 Total: -16.59 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.71 Total: 16.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.63 -6.01 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186383982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.525 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds