Wall clock time and date at job start Tue Mar 31 2020 02:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21278 * 120.00050 * 2 1 4 4 N 1.34779 * 120.00102 * 180.02562 * 2 1 3 5 5 C 1.46505 * 120.00110 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46710 * 54.81691 * 5 4 2 7 7 C 1.52997 * 109.47002 * 294.82070 * 5 4 2 8 8 C 1.50695 * 109.47252 * 174.81711 * 5 4 2 9 9 O 1.21283 * 120.00001 * 134.10745 * 8 5 4 10 10 N 1.34781 * 119.99941 * 314.11528 * 8 5 4 11 11 C 1.47428 * 125.64629 * 184.29908 * 10 8 5 12 12 C 1.55135 * 104.72104 * 155.81336 * 11 10 8 13 13 C 1.55159 * 101.48471 * 37.29476 * 12 11 10 14 14 H 1.08999 * 110.72017 * 82.69723 * 13 12 11 15 15 N 1.46497 * 110.71962 * 205.97053 * 13 12 11 16 16 C 1.36936 * 119.99789 * 268.52424 * 15 13 12 17 17 H 1.07999 * 120.00135 * 359.97438 * 16 15 13 18 18 C 1.38814 * 120.00180 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00477 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99719 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47134 * 90.00474 * 20 18 16 22 22 H 1.48500 * 109.46754 * 210.00107 * 20 18 16 23 23 H 1.48496 * 109.47071 * 329.99956 * 20 18 16 24 24 C 1.47022 * 125.65088 * 4.60055 * 10 8 5 25 25 H 1.09007 * 109.47223 * 239.99401 * 1 2 3 26 26 H 1.09002 * 109.47397 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47367 * 119.99581 * 1 2 3 28 28 H 0.96997 * 120.00034 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.47470 * 300.00100 * 6 5 4 30 30 H 1.09000 * 109.47469 * 60.00599 * 6 5 4 31 31 H 1.09002 * 109.46598 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.46944 * 180.02562 * 7 5 4 33 33 H 1.09006 * 109.47007 * 299.99745 * 7 5 4 34 34 H 1.08997 * 109.47236 * 59.99864 * 7 5 4 35 35 H 1.09002 * 110.36577 * 274.74122 * 11 10 8 36 36 H 1.08997 * 110.36861 * 37.06314 * 11 10 8 37 37 H 1.08997 * 111.18948 * 279.18920 * 12 11 10 38 38 H 1.09000 * 110.93800 * 155.28831 * 12 11 10 39 39 H 0.97000 * 120.00658 * 88.51744 * 15 13 12 40 40 H 0.96994 * 120.00397 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.88247 * 300.44408 * 24 10 8 42 42 H 1.08996 * 109.88144 * 61.45128 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1562 -0.3363 1.1779 7 6 4.1553 -0.5614 -1.3104 8 6 4.1483 -2.5822 0.1267 9 8 5.0394 -2.9768 -0.5952 10 7 3.6072 -3.4092 1.0432 11 6 4.0599 -4.7814 1.3358 12 6 3.5901 -5.0500 2.7897 13 6 2.2181 -4.3257 2.8097 14 1 1.4401 -4.9617 2.3873 15 7 1.8696 -3.9132 4.1715 16 6 1.1353 -4.7465 4.9725 17 1 0.8126 -5.7076 4.6002 18 6 0.8055 -4.3559 6.2631 19 7 0.1001 -5.1569 7.0332 20 14 1.3641 -2.6938 6.9074 21 1 0.3317 -1.6715 6.6005 22 1 1.5604 -2.7733 8.3772 23 1 2.6442 -2.3155 6.2568 24 6 2.4640 -3.0946 1.9124 25 1 -0.3634 -0.5140 0.8900 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.6959 -2.0072 -0.0005 29 1 3.7929 0.6872 1.0855 30 1 3.7933 -0.7679 2.1107 31 1 5.2463 -0.3367 1.1777 32 1 5.2454 -0.5618 -1.3110 33 1 3.7917 -1.1534 -2.1504 34 1 3.7920 0.4621 -1.4028 35 1 3.5962 -5.4886 0.6480 36 1 5.1461 -4.8445 1.2707 37 1 4.2756 -4.6085 3.5131 38 1 3.4706 -6.1184 2.9693 39 1 2.1591 -3.0499 4.5059 40 1 -0.1300 -4.8842 7.9351 41 1 2.6953 -2.2263 2.5295 42 1 1.5813 -2.8931 1.3055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186383982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:50 Heat of formation + Delta-G solvation = -65.868078 kcal Electronic energy + Delta-G solvation = -23724.299610 eV Core-core repulsion = 20318.350236 eV Total energy + Delta-G solvation = -3405.949375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07361 -40.36147 -38.95725 -36.67149 -35.98685 -33.48893 -33.21337 -31.51832 -29.86318 -29.52482 -28.33000 -25.95725 -25.02862 -23.19029 -21.78155 -21.15362 -20.63294 -19.80409 -18.67795 -17.87540 -17.36340 -16.94476 -16.37033 -16.21637 -16.00423 -15.73056 -15.24494 -14.87081 -14.74365 -14.35688 -14.28678 -14.06476 -13.61487 -13.52625 -13.47173 -13.29421 -13.16645 -13.12884 -12.93855 -12.76389 -12.72579 -12.36505 -12.23997 -12.14132 -11.80505 -11.70861 -11.28531 -10.97508 -10.55161 -10.26448 -9.81463 -9.32477 -8.00321 -5.34938 1.18700 1.40809 1.42243 1.49369 1.63042 1.73367 2.22145 2.49571 3.07790 3.30025 3.54604 3.64293 3.76374 3.83672 3.93051 3.99000 4.20818 4.30738 4.36167 4.47466 4.54395 4.59519 4.67808 4.70117 4.71504 4.76334 4.81022 4.93103 5.01781 5.11678 5.13575 5.15880 5.24789 5.32716 5.38516 5.79711 6.22823 6.28258 6.45697 6.86065 7.08268 7.19463 7.82397 7.99352 9.20516 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.005520 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.017781 B = 5071.152952 C = 6012.053501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.514 3.486 3 O -0.575 6.575 4 N -0.720 5.720 5 C 0.167 3.833 6 C -0.162 4.162 7 C -0.137 4.137 8 C 0.533 3.467 9 O -0.561 6.561 10 N -0.607 5.607 11 C 0.110 3.890 12 C -0.148 4.148 13 C 0.169 3.831 14 H 0.082 0.918 15 N -0.740 5.740 16 C -0.226 4.226 17 H 0.066 0.934 18 C -0.057 4.057 19 N -0.981 5.981 20 Si 0.945 3.055 21 H -0.276 1.276 22 H -0.303 1.303 23 H -0.255 1.255 24 C 0.096 3.904 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.412 0.588 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.365 0.635 40 H 0.257 0.743 41 H 0.071 0.929 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 8.005 -16.229 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.303 3.697 3 O -0.454 6.454 4 N -0.379 5.379 5 C 0.078 3.922 6 C -0.220 4.220 7 C -0.196 4.196 8 C 0.320 3.680 9 O -0.439 6.439 10 N -0.340 5.340 11 C -0.012 4.012 12 C -0.188 4.188 13 C 0.059 3.941 14 H 0.100 0.900 15 N -0.383 5.383 16 C -0.357 4.357 17 H 0.084 0.916 18 C -0.248 4.248 19 N -0.631 5.631 20 Si 0.773 3.227 21 H -0.202 1.202 22 H -0.230 1.230 23 H -0.180 1.180 24 C -0.028 4.028 25 H 0.123 0.877 26 H 0.112 0.888 27 H 0.130 0.870 28 H 0.252 0.748 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.199 0.801 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.202 8.387 -16.601 19.069 hybrid contribution 0.115 0.210 1.090 1.116 sum 4.317 8.597 -15.511 18.252 Atomic orbital electron populations 1.21988 0.88332 1.06373 1.06346 1.21460 0.91968 0.82492 0.73738 1.90640 1.71444 1.32639 1.50726 1.46450 1.05224 1.10076 1.76101 1.20422 0.81766 0.91217 0.98839 1.22233 1.01854 1.02038 0.95869 1.21906 1.01908 1.01460 0.94293 1.20376 0.82243 0.86493 0.78858 1.90703 1.32256 1.76642 1.44303 1.48535 1.32983 1.15530 1.36919 1.22358 1.00269 0.82311 0.96248 1.23432 0.98668 1.02197 0.94539 1.21375 0.95268 0.93533 0.83901 0.89993 1.42652 1.64561 1.19423 1.11657 1.18996 1.23817 0.98788 0.94086 0.91560 1.25380 1.00851 1.01457 0.97157 1.69854 1.45121 1.38858 1.09277 0.85573 0.79087 0.80969 0.77070 1.20219 1.23016 1.17971 1.22575 0.88456 0.98846 0.92918 0.87693 0.88791 0.86951 0.74775 0.89158 0.92000 0.91161 0.91192 0.92043 0.90647 0.89604 0.90964 0.92015 0.89879 0.80108 0.93426 0.91075 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.32 71.23 0.74 -1.33 16 2 C 0.51 10.17 7.36 87.65 0.65 10.81 16 3 O -0.57 -15.58 13.32 -3.02 -0.04 -15.62 16 4 N -0.72 -13.37 3.99 -426.34 -1.70 -15.07 16 5 C 0.17 3.82 0.66 2.85 0.00 3.82 16 6 C -0.16 -3.83 8.25 71.98 0.59 -3.24 16 7 C -0.14 -3.14 7.87 71.98 0.57 -2.58 16 8 C 0.53 13.89 6.65 87.65 0.58 14.48 16 9 O -0.56 -17.99 16.28 -3.04 -0.05 -18.04 16 10 N -0.61 -14.58 3.30 -811.34 -2.68 -17.27 16 11 C 0.11 2.63 6.90 86.93 0.60 3.23 16 12 C -0.15 -4.09 6.78 32.07 0.22 -3.87 16 13 C 0.17 5.04 3.61 46.18 0.17 5.20 16 14 H 0.08 2.43 8.09 -2.39 -0.02 2.41 16 15 N -0.74 -29.38 5.03 -317.33 -1.60 -30.98 16 16 C -0.23 -11.47 10.44 84.03 0.88 -10.59 16 17 H 0.07 3.67 8.06 -2.91 -0.02 3.65 16 18 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 19 N -0.98 -59.43 13.97 21.65 0.30 -59.13 16 20 Si 0.94 42.47 27.74 68.60 1.90 44.38 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 24 C 0.10 2.23 5.24 86.73 0.45 2.69 16 25 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 27 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.41 6.16 5.74 -92.71 -0.53 5.63 16 29 H 0.09 2.33 5.81 -2.39 -0.01 2.32 16 30 H 0.06 1.47 6.12 -2.39 -0.01 1.46 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.64 7.95 -2.39 -0.02 1.62 16 33 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.07 1.80 6.56 -2.39 -0.02 1.78 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.37 14.22 5.43 -92.71 -0.50 13.72 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.07 1.76 5.82 -2.38 -0.01 1.75 16 42 H 0.10 1.72 5.65 -2.39 -0.01 1.71 16 Total: -1.00 -68.35 330.67 1.99 -66.35 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.05 Total: 29.38 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.91 Total: 15.99 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -5.68 Total: -122.43 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.09 Total: -33.67 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.90 Total: 44.38 kcal Total: -68.35 1.99 -66.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186383982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.486 kcal (2) G-P(sol) polarization free energy of solvation -68.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds