Wall clock time and date at job start Tue Mar 31 2020 02:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 119.99814 * 2 1 4 4 N 1.34781 * 120.00071 * 179.97438 * 2 1 3 5 5 C 1.46494 * 120.00182 * 179.97438 * 4 2 1 6 6 H 1.08998 * 109.47076 * 325.00524 * 5 4 2 7 7 C 1.52999 * 109.47101 * 85.00012 * 5 4 2 8 8 C 1.50696 * 109.47380 * 205.00370 * 5 4 2 9 9 O 1.21281 * 119.99935 * 334.67692 * 8 5 4 10 10 N 1.34776 * 120.00080 * 154.68405 * 8 5 4 11 11 C 1.47013 * 125.64899 * 4.70832 * 10 8 5 12 12 C 1.54338 * 107.26758 * 178.85400 * 11 10 8 13 13 C 1.55160 * 103.02048 * 338.14468 * 12 11 10 14 14 H 1.09001 * 111.03482 * 277.21687 * 13 12 11 15 15 N 1.46498 * 111.00387 * 153.37800 * 13 12 11 16 16 C 1.46496 * 120.00187 * 307.80262 * 15 13 12 17 17 C 1.36938 * 120.00013 * 127.80807 * 15 13 12 18 18 H 1.08007 * 119.99793 * 21.98297 * 17 15 13 19 19 C 1.38807 * 119.99938 * 201.98852 * 17 15 13 20 20 N 1.31617 * 120.00113 * 14.62213 * 19 17 15 21 21 Si 1.86801 * 119.99699 * 194.62253 * 19 17 15 22 22 H 1.48496 * 109.47381 * 90.00090 * 21 19 17 23 23 H 1.48504 * 109.46885 * 209.99917 * 21 19 17 24 24 H 1.48501 * 109.47526 * 329.99721 * 21 19 17 25 25 C 1.47426 * 125.64765 * 185.02961 * 10 8 5 26 26 H 1.09001 * 109.47487 * 239.99860 * 1 2 3 27 27 H 1.09000 * 109.47447 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47490 * 120.00152 * 1 2 3 29 29 H 0.96999 * 119.99770 * 0.02562 * 4 2 1 30 30 H 1.09007 * 109.47578 * 294.96160 * 7 5 4 31 31 H 1.09006 * 109.47400 * 54.95880 * 7 5 4 32 32 H 1.08998 * 109.47189 * 174.95857 * 7 5 4 33 33 H 1.09001 * 109.88804 * 298.40024 * 11 10 8 34 34 H 1.09002 * 109.88433 * 59.56700 * 11 10 8 35 35 H 1.08998 * 110.85511 * 219.67599 * 12 11 10 36 36 H 1.09006 * 110.66516 * 96.52379 * 12 11 10 37 37 H 1.08998 * 109.47432 * 95.14228 * 16 15 13 38 38 H 1.08998 * 109.47351 * 215.14407 * 16 15 13 39 39 H 1.09004 * 109.47248 * 335.14726 * 16 15 13 40 40 H 0.97006 * 119.99850 * 180.02562 * 20 19 17 41 41 H 1.09007 * 110.36403 * 322.91976 * 25 10 8 42 42 H 1.08995 * 110.37008 * 85.13351 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0089 -0.3258 -0.5901 7 6 4.1564 -1.0406 1.4367 8 6 4.1479 -2.4553 -0.5999 9 8 3.4550 -3.4501 -0.5672 10 7 5.3671 -2.5017 -1.1725 11 6 6.3455 -1.4047 -1.1952 12 6 7.5989 -1.9237 -1.9311 13 6 7.4719 -3.4641 -1.7941 14 1 7.8521 -3.8038 -0.8307 15 7 8.1548 -4.1473 -2.8955 16 6 7.8580 -3.7794 -4.2821 17 6 9.0705 -5.1299 -2.6289 18 1 9.0448 -5.6496 -1.6824 19 6 10.0318 -5.4580 -3.5750 20 7 10.2547 -4.6539 -4.5928 21 14 11.0090 -7.0407 -3.4035 22 1 10.2994 -8.1393 -4.1067 23 1 12.3557 -6.8582 -4.0022 24 1 11.1491 -7.3827 -1.9652 25 6 5.9378 -3.6589 -1.8857 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3634 1.0276 0.0005 28 1 -0.3634 -0.5138 -0.8899 29 1 1.6959 -2.0073 0.0005 30 1 3.8688 -0.0697 1.8403 31 1 3.7214 -1.8314 2.0480 32 1 5.2426 -1.1304 1.4455 33 1 5.9299 -0.5481 -1.7258 34 1 6.6075 -1.1205 -0.1760 35 1 8.5083 -1.5672 -1.4474 36 1 7.5797 -1.6270 -2.9798 37 1 8.5895 -3.0496 -4.6289 38 1 7.9044 -4.6679 -4.9117 39 1 6.8590 -3.3467 -4.3373 40 1 10.9262 -4.8833 -5.2542 41 1 5.6437 -4.5881 -1.3976 42 1 5.6154 -3.6596 -2.9269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188747778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:15 Heat of formation + Delta-G solvation = -68.052036 kcal Electronic energy + Delta-G solvation = -22863.645968 eV Core-core repulsion = 19457.601890 eV Total energy + Delta-G solvation = -3406.044078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62187 -40.39914 -38.98440 -36.61234 -36.05766 -33.60900 -32.52709 -31.27151 -29.92228 -29.27532 -28.06798 -26.16548 -24.57252 -23.63141 -21.56395 -21.00741 -20.49174 -18.96395 -18.66868 -17.75260 -17.39435 -17.25762 -16.57858 -16.26203 -15.92267 -15.51773 -15.13657 -14.95135 -14.65681 -14.39444 -14.26002 -14.19095 -13.77532 -13.46975 -13.34549 -13.20040 -13.02314 -12.94856 -12.81987 -12.67859 -12.50710 -12.40275 -12.15842 -12.09346 -11.84204 -11.46014 -11.09404 -10.98933 -10.65535 -10.28125 -9.75634 -8.81805 -7.84895 -5.33013 1.32653 1.47175 1.49239 1.56779 1.59094 1.69102 2.33986 2.51022 3.21594 3.31237 3.51184 3.85396 3.89634 3.97087 4.01861 4.07241 4.17407 4.30114 4.39700 4.52772 4.60531 4.66079 4.67392 4.73402 4.75633 4.87071 4.97963 5.06035 5.11357 5.13852 5.20566 5.28485 5.29366 5.40792 5.63569 5.70266 6.29932 6.40757 6.47180 6.90538 7.12493 7.16487 7.82879 8.26285 9.18022 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.040069 B = 0.003284 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.633873 B = 8523.185114 C = 8634.848082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.590 6.590 4 N -0.714 5.714 5 C 0.133 3.867 6 H 0.108 0.892 7 C -0.150 4.150 8 C 0.525 3.475 9 O -0.575 6.575 10 N -0.607 5.607 11 C 0.104 3.896 12 C -0.141 4.141 13 C 0.166 3.834 14 H 0.077 0.923 15 N -0.601 5.601 16 C 0.178 3.822 17 C -0.268 4.268 18 H 0.072 0.928 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.289 1.289 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.097 3.903 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.416 0.584 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.012 0.988 38 H 0.013 0.987 39 H 0.028 0.972 40 H 0.249 0.751 41 H 0.059 0.941 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.905 9.332 10.356 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.470 6.470 4 N -0.368 5.368 5 C 0.024 3.976 6 H 0.126 0.874 7 C -0.209 4.209 8 C 0.313 3.687 9 O -0.455 6.455 10 N -0.339 5.339 11 C -0.019 4.019 12 C -0.181 4.181 13 C 0.057 3.943 14 H 0.095 0.905 15 N -0.322 5.322 16 C 0.033 3.967 17 C -0.398 4.398 18 H 0.090 0.910 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.193 1.193 25 C -0.028 4.028 26 H 0.131 0.869 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.254 0.746 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.030 0.970 38 H 0.032 0.968 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.779 9.525 10.261 21.095 hybrid contribution 0.727 -1.406 -0.534 1.670 sum -15.052 8.119 9.727 19.675 Atomic orbital electron populations 1.21934 0.87717 1.06372 1.06413 1.21618 0.92358 0.82232 0.73839 1.90705 1.71991 1.32650 1.51687 1.45973 1.05463 1.10244 1.75137 1.20701 0.82703 0.94749 0.99404 0.87428 1.22041 1.02574 1.03509 0.92728 1.20628 0.80112 0.90458 0.77459 1.90666 1.56908 1.37752 1.60157 1.48445 1.15356 1.16306 1.53828 1.22283 0.87983 0.89138 1.02455 1.23063 0.97398 0.96650 1.00986 1.21537 0.89170 0.91802 0.91751 0.90508 1.43976 1.45448 1.41677 1.01114 1.20502 0.94442 0.97371 0.84398 1.19541 1.06928 1.10678 1.02636 0.91011 1.25709 0.98695 1.01452 0.98465 1.70222 1.35518 1.36775 1.15431 0.85273 0.77397 0.79812 0.77984 1.21617 1.22132 1.19265 1.22685 0.95719 0.88555 0.95805 0.86932 0.88612 0.87540 0.74630 0.90522 0.91506 0.89825 0.89593 0.88524 0.89526 0.91586 0.96983 0.96850 0.95313 0.94191 0.92255 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.32 71.23 0.74 -0.92 16 2 C 0.51 9.98 7.90 87.66 0.69 10.68 16 3 O -0.59 -16.37 16.75 -3.04 -0.05 -16.42 16 4 N -0.71 -13.95 5.05 -446.12 -2.25 -16.20 16 5 C 0.13 2.91 2.44 44.24 0.11 3.02 16 6 H 0.11 2.41 6.76 -2.39 -0.02 2.39 16 7 C -0.15 -2.73 9.47 71.98 0.68 -2.05 16 8 C 0.52 14.65 7.05 87.66 0.62 15.27 16 9 O -0.57 -19.49 16.24 -3.03 -0.05 -19.54 16 10 N -0.61 -17.26 3.33 -811.78 -2.70 -19.96 16 11 C 0.10 2.40 6.27 86.74 0.54 2.95 16 12 C -0.14 -4.28 6.50 31.79 0.21 -4.07 16 13 C 0.17 6.26 3.54 46.39 0.16 6.42 16 14 H 0.08 2.91 7.95 -2.39 -0.02 2.89 16 15 N -0.60 -28.72 2.96 -695.02 -2.06 -30.78 16 16 C 0.18 8.47 7.56 127.77 0.97 9.44 16 17 C -0.27 -14.25 9.61 84.03 0.81 -13.44 16 18 H 0.07 3.71 7.87 -2.91 -0.02 3.69 16 19 C -0.05 -2.60 5.07 84.86 0.43 -2.17 16 20 N -0.93 -53.78 10.74 21.65 0.23 -53.55 16 21 Si 0.97 44.27 29.58 68.60 2.03 46.30 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 C 0.10 3.40 6.49 86.86 0.56 3.97 16 26 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.96 8.12 -2.39 -0.02 0.94 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.42 7.38 7.79 -92.71 -0.72 6.66 16 30 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.08 1.35 7.08 -2.39 -0.02 1.33 16 33 H 0.09 1.72 7.79 -2.39 -0.02 1.70 16 34 H 0.10 1.75 7.08 -2.39 -0.02 1.74 16 35 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.07 2.18 6.99 -2.38 -0.02 2.16 16 37 H 0.01 0.62 7.36 -2.39 -0.02 0.60 16 38 H 0.01 0.68 7.32 -2.39 -0.02 0.66 16 39 H 0.03 1.18 6.38 -2.38 -0.02 1.16 16 40 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 41 H 0.06 2.24 7.99 -2.38 -0.02 2.22 16 42 H 0.06 2.15 6.43 -2.39 -0.02 2.14 16 Total: -1.00 -69.47 340.12 1.97 -67.51 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.30 Total: 13.55 kcal Atomic # 6 Polarization: 22.57 SS G_CDS: 6.52 Total: 29.08 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -6.78 Total: -120.48 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.10 Total: -35.96 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.47 1.97 -67.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188747778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.546 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds