Wall clock time and date at job start Tue Mar 31 2020 03:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46502 * 119.99780 * 2 1 4 4 C 1.34774 * 119.99928 * 180.02562 * 2 1 3 5 5 O 1.21278 * 120.00158 * 359.97438 * 4 2 1 6 6 C 1.50698 * 119.99748 * 179.72181 * 4 2 1 7 7 C 1.50703 * 109.46991 * 179.97438 * 6 4 2 8 8 O 1.21278 * 120.00279 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99703 * 179.97438 * 7 6 4 10 10 C 1.47015 * 125.65208 * 359.69928 * 9 7 6 11 11 C 1.54332 * 107.26984 * 178.84459 * 10 9 7 12 12 C 1.55156 * 103.01849 * 338.14125 * 11 10 9 13 13 H 1.08999 * 111.00369 * 277.22954 * 12 11 10 14 14 N 1.46505 * 111.03665 * 153.39560 * 12 11 10 15 15 C 1.46495 * 119.99841 * 307.77971 * 14 12 11 16 16 C 1.36935 * 119.99825 * 127.78497 * 14 12 11 17 17 H 1.07996 * 119.99864 * 328.51625 * 16 14 12 18 18 C 1.38812 * 119.99810 * 148.51787 * 16 14 12 19 19 N 1.31621 * 119.99891 * 153.81595 * 18 16 14 20 20 Si 1.86796 * 120.00000 * 333.81649 * 18 16 14 21 21 H 1.48503 * 109.47436 * 94.88743 * 20 18 16 22 22 H 1.48501 * 109.47350 * 214.88266 * 20 18 16 23 23 H 1.48500 * 109.47564 * 334.88471 * 20 18 16 24 24 C 1.47427 * 125.64467 * 180.02562 * 9 7 6 25 25 H 1.09003 * 109.46601 * 269.99528 * 1 2 3 26 26 H 1.09000 * 109.47245 * 29.99805 * 1 2 3 27 27 H 1.09001 * 109.46722 * 150.00168 * 1 2 3 28 28 H 1.09003 * 109.46670 * 270.00169 * 3 2 1 29 29 H 1.08996 * 109.46895 * 30.00098 * 3 2 1 30 30 H 1.08995 * 109.47141 * 150.00600 * 3 2 1 31 31 H 1.09004 * 109.47300 * 300.00087 * 6 4 2 32 32 H 1.08998 * 109.47346 * 60.00006 * 6 4 2 33 33 H 1.09005 * 109.88100 * 298.39456 * 10 9 7 34 34 H 1.09007 * 109.88443 * 59.55127 * 10 9 7 35 35 H 1.09002 * 110.85523 * 219.67012 * 11 10 9 36 36 H 1.09001 * 110.51318 * 96.44988 * 11 10 9 37 37 H 1.09001 * 109.46955 * 95.55075 * 15 14 12 38 38 H 1.08998 * 109.47273 * 215.55052 * 15 14 12 39 39 H 1.09002 * 109.47526 * 335.55231 * 15 14 12 40 40 H 0.96999 * 119.99648 * 179.97438 * 19 18 16 41 41 H 1.08994 * 110.36767 * 322.93159 * 24 9 7 42 42 H 1.08997 * 110.36687 * 85.25668 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0069 7 6 4.1483 -2.5880 -0.0055 8 8 3.3602 -3.5098 -0.0004 9 7 5.4734 -2.8342 -0.0110 10 6 6.5340 -1.8163 -0.0248 11 6 7.8850 -2.5618 0.0031 12 6 7.5081 -3.9462 0.5938 13 1 7.4647 -3.9078 1.6823 14 7 8.4420 -4.9816 0.1445 15 6 8.7187 -5.1483 -1.2844 16 6 9.0562 -5.7937 1.0601 17 1 9.2869 -5.4180 2.0460 18 6 9.3822 -7.0997 0.7211 19 7 10.3773 -7.7089 1.3303 20 14 8.4087 -7.9926 -0.5996 21 1 9.1023 -7.8534 -1.9052 22 1 8.3006 -9.4312 -0.2475 23 1 7.0491 -7.4032 -0.6961 24 6 6.0992 -4.1690 -0.0110 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.3791 1.5834 -1.0277 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1385 0.5137 31 1 4.0055 -0.6550 -0.8994 32 1 4.0130 -0.6516 0.8805 33 1 6.4589 -1.2149 -0.9309 34 1 6.4467 -1.1779 0.8545 35 1 8.5982 -2.0485 0.6481 36 1 8.2833 -2.6686 -1.0059 37 1 9.6227 -4.5982 -1.5460 38 1 8.8601 -6.2061 -1.5062 39 1 7.8794 -4.7645 -1.8643 40 1 10.6049 -8.6216 1.0936 41 1 5.5248 -4.8573 0.6090 42 1 6.1791 -4.5505 -1.0289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192724832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:50 Heat of formation + Delta-G solvation = -18.132099 kcal Electronic energy + Delta-G solvation = -22871.405155 eV Core-core repulsion = 19467.525768 eV Total energy + Delta-G solvation = -3403.879387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45793 -39.22359 -37.39183 -35.64497 -34.93200 -32.03642 -31.23148 -30.01402 -28.46217 -27.81704 -26.29810 -25.95335 -23.71808 -22.36513 -20.18514 -19.42219 -18.68567 -17.65132 -17.10661 -16.52596 -16.32726 -16.00402 -15.91948 -15.18262 -14.80222 -14.30656 -13.75895 -13.41364 -13.36801 -13.30161 -13.02374 -12.93307 -12.73858 -12.49933 -12.42845 -12.34267 -12.25570 -12.02408 -11.91639 -11.68247 -10.90568 -10.82034 -10.54341 -10.17575 -10.08910 -9.97426 -9.54105 -9.32048 -8.94482 -8.52878 -8.36186 -6.99922 -6.05091 -3.40178 2.48682 2.58322 2.84742 3.25782 3.30754 3.49196 3.54558 4.22726 4.49427 4.50986 4.66034 4.76127 4.87891 4.95915 4.97024 5.04878 5.09819 5.21503 5.24652 5.29803 5.32667 5.38415 5.54755 5.66253 5.72247 5.86828 6.10914 6.15991 6.20899 6.29043 6.41610 6.49126 6.60602 6.67126 6.77015 7.04518 7.74200 7.93343 8.03885 8.28435 8.42686 8.89416 9.65396 10.01216 11.10340 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.003613 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.813749 B = 7747.308837 C = 8219.867456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.631 5.631 3 C 0.077 3.923 4 C 0.511 3.489 5 O -0.489 6.489 6 C -0.158 4.158 7 C 0.523 3.477 8 O -0.501 6.501 9 N -0.619 5.619 10 C 0.103 3.897 11 C -0.150 4.150 12 C 0.172 3.828 13 H 0.087 0.913 14 N -0.595 5.595 15 C 0.109 3.891 16 C -0.274 4.274 17 H 0.084 0.916 18 C 0.036 3.964 19 N -0.894 5.894 20 Si 0.879 3.121 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.270 1.270 24 C 0.083 3.917 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.023 0.977 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.075 0.925 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.653 22.108 -4.103 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.369 5.369 3 C -0.066 4.066 4 C 0.297 3.703 5 O -0.360 6.360 6 C -0.200 4.200 7 C 0.308 3.692 8 O -0.374 6.374 9 N -0.355 5.355 10 C -0.021 4.021 11 C -0.189 4.189 12 C 0.062 3.938 13 H 0.105 0.895 14 N -0.316 5.316 15 C -0.035 4.035 16 C -0.402 4.402 17 H 0.102 0.898 18 C -0.165 4.165 19 N -0.535 5.535 20 Si 0.710 3.290 21 H -0.214 1.214 22 H -0.230 1.230 23 H -0.195 1.195 24 C -0.041 4.041 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.390 20.831 -4.062 25.095 hybrid contribution -0.395 -0.318 -0.826 0.969 sum -13.785 20.513 -4.888 25.194 Atomic orbital electron populations 1.21598 0.79094 1.03032 1.01790 1.47794 1.07094 1.06201 1.75776 1.21819 0.97416 0.85436 1.01933 1.20116 0.89385 0.83478 0.77334 1.90870 1.69308 1.30074 1.45730 1.21596 0.94366 0.97921 1.06161 1.19554 0.81098 0.90367 0.78152 1.90858 1.53558 1.45518 1.47454 1.48531 1.04361 1.09156 1.73474 1.22043 0.88003 0.91355 1.00687 1.23134 0.94751 0.98236 1.02805 1.21607 0.86386 0.87771 0.98028 0.89452 1.44044 1.47248 1.38043 1.02285 1.21337 0.97672 0.99539 0.84973 1.18801 1.32630 0.91754 0.97054 0.89818 1.25319 0.96984 0.96446 0.97761 1.69904 1.25598 1.13574 1.44376 0.86973 0.82363 0.78510 0.81175 1.21429 1.22998 1.19522 1.23127 0.95865 0.83445 1.01660 0.92841 0.91367 0.90504 0.92484 0.90943 0.90839 0.86422 0.86307 0.92042 0.91747 0.90123 0.90645 0.95923 0.94250 0.94569 0.92580 0.90648 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.44 59.85 0.62 1.32 16 2 N -0.63 -5.73 3.27 -189.51 -0.62 -6.35 16 3 C 0.08 0.35 10.24 59.85 0.61 0.96 16 4 C 0.51 6.68 7.67 -10.99 -0.08 6.59 16 5 O -0.49 -9.11 13.76 -18.96 -0.26 -9.37 16 6 C -0.16 -1.66 3.94 -29.03 -0.11 -1.77 16 7 C 0.52 8.45 7.84 -10.98 -0.09 8.37 16 8 O -0.50 -10.84 14.44 -18.96 -0.27 -11.11 16 9 N -0.62 -9.48 3.33 -170.50 -0.57 -10.04 16 10 C 0.10 1.16 6.49 -3.06 -0.02 1.14 16 11 C -0.15 -2.09 6.50 -24.89 -0.16 -2.25 16 12 C 0.17 3.21 3.54 -65.77 -0.23 2.97 16 13 H 0.09 1.68 7.96 -51.93 -0.41 1.26 16 14 N -0.59 -13.64 2.62 -171.02 -0.45 -14.09 16 15 C 0.11 2.32 8.33 59.84 0.50 2.82 16 16 C -0.27 -7.50 9.89 -15.06 -0.15 -7.65 16 17 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 18 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 19 N -0.89 -27.04 13.97 55.49 0.78 -26.26 16 20 Si 0.88 22.48 25.07 -169.99 -4.26 18.22 16 21 H -0.29 -7.05 6.62 56.52 0.37 -6.68 16 22 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 23 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.08 1.56 6.46 -2.52 -0.02 1.54 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.34 8.07 -51.93 -0.42 -0.07 16 27 H 0.08 0.77 7.42 -51.93 -0.39 0.38 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 30 H 0.07 0.25 6.44 -51.93 -0.33 -0.09 16 31 H 0.12 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.12 0.88 7.39 -51.93 -0.38 0.49 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.07 6.99 -51.93 -0.36 0.71 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.04 0.93 2.55 -51.93 -0.13 0.79 16 39 H 0.04 0.67 6.37 -51.93 -0.33 0.34 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.08 1.59 8.04 -51.93 -0.42 1.17 16 42 H 0.06 1.24 6.43 -51.93 -0.33 0.91 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -37.24 332.97 -6.33 -43.58 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -6.48 Total: -4.57 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 0.78 Total: 14.98 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.86 Total: -56.74 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.53 Total: -20.48 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.26 Total: 18.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.24 -6.33 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192724832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.446 kcal (2) G-P(sol) polarization free energy of solvation -37.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds