Wall clock time and date at job start Tue Mar 31 2020 03:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46502 * 119.99780 * 2 1 4 4 C 1.34774 * 119.99928 * 180.02562 * 2 1 3 5 5 O 1.21278 * 120.00158 * 359.97438 * 4 2 1 6 6 C 1.50698 * 119.99748 * 179.72181 * 4 2 1 7 7 C 1.50703 * 109.46991 * 179.97438 * 6 4 2 8 8 O 1.21278 * 120.00279 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99703 * 179.97438 * 7 6 4 10 10 C 1.47015 * 125.65208 * 359.69928 * 9 7 6 11 11 C 1.54332 * 107.26984 * 178.84459 * 10 9 7 12 12 C 1.55156 * 103.01849 * 338.14125 * 11 10 9 13 13 H 1.08999 * 111.00369 * 277.22954 * 12 11 10 14 14 N 1.46505 * 111.03665 * 153.39560 * 12 11 10 15 15 C 1.46495 * 119.99841 * 307.77971 * 14 12 11 16 16 C 1.36935 * 119.99825 * 127.78497 * 14 12 11 17 17 H 1.07996 * 119.99864 * 328.51625 * 16 14 12 18 18 C 1.38812 * 119.99810 * 148.51787 * 16 14 12 19 19 N 1.31621 * 119.99891 * 153.81595 * 18 16 14 20 20 Si 1.86796 * 120.00000 * 333.81649 * 18 16 14 21 21 H 1.48503 * 109.47436 * 94.88743 * 20 18 16 22 22 H 1.48501 * 109.47350 * 214.88266 * 20 18 16 23 23 H 1.48500 * 109.47564 * 334.88471 * 20 18 16 24 24 C 1.47427 * 125.64467 * 180.02562 * 9 7 6 25 25 H 1.09003 * 109.46601 * 269.99528 * 1 2 3 26 26 H 1.09000 * 109.47245 * 29.99805 * 1 2 3 27 27 H 1.09001 * 109.46722 * 150.00168 * 1 2 3 28 28 H 1.09003 * 109.46670 * 270.00169 * 3 2 1 29 29 H 1.08996 * 109.46895 * 30.00098 * 3 2 1 30 30 H 1.08995 * 109.47141 * 150.00600 * 3 2 1 31 31 H 1.09004 * 109.47300 * 300.00087 * 6 4 2 32 32 H 1.08998 * 109.47346 * 60.00006 * 6 4 2 33 33 H 1.09005 * 109.88100 * 298.39456 * 10 9 7 34 34 H 1.09007 * 109.88443 * 59.55127 * 10 9 7 35 35 H 1.09002 * 110.85523 * 219.67012 * 11 10 9 36 36 H 1.09001 * 110.51318 * 96.44988 * 11 10 9 37 37 H 1.09001 * 109.46955 * 95.55075 * 15 14 12 38 38 H 1.08998 * 109.47273 * 215.55052 * 15 14 12 39 39 H 1.09002 * 109.47526 * 335.55231 * 15 14 12 40 40 H 0.96999 * 119.99648 * 179.97438 * 19 18 16 41 41 H 1.08994 * 110.36767 * 322.93159 * 24 9 7 42 42 H 1.08997 * 110.36687 * 85.25668 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6459 -1.1671 -0.0069 7 6 4.1483 -2.5880 -0.0055 8 8 3.3602 -3.5098 -0.0004 9 7 5.4734 -2.8342 -0.0110 10 6 6.5340 -1.8163 -0.0248 11 6 7.8850 -2.5618 0.0031 12 6 7.5081 -3.9462 0.5938 13 1 7.4647 -3.9078 1.6823 14 7 8.4420 -4.9816 0.1445 15 6 8.7187 -5.1483 -1.2844 16 6 9.0562 -5.7937 1.0601 17 1 9.2869 -5.4180 2.0460 18 6 9.3822 -7.0997 0.7211 19 7 10.3773 -7.7089 1.3303 20 14 8.4087 -7.9926 -0.5996 21 1 9.1023 -7.8534 -1.9052 22 1 8.3006 -9.4312 -0.2475 23 1 7.0491 -7.4032 -0.6961 24 6 6.0992 -4.1690 -0.0110 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.3791 1.5834 -1.0277 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1385 0.5137 31 1 4.0055 -0.6550 -0.8994 32 1 4.0130 -0.6516 0.8805 33 1 6.4589 -1.2149 -0.9309 34 1 6.4467 -1.1779 0.8545 35 1 8.5982 -2.0485 0.6481 36 1 8.2833 -2.6686 -1.0059 37 1 9.6227 -4.5982 -1.5460 38 1 8.8601 -6.2061 -1.5062 39 1 7.8794 -4.7645 -1.8643 40 1 10.6049 -8.6216 1.0936 41 1 5.5248 -4.8573 0.6090 42 1 6.1791 -4.5505 -1.0289 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192724832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:49 Heat of formation + Delta-G solvation = -45.813595 kcal Electronic energy + Delta-G solvation = -22872.605515 eV Core-core repulsion = 19467.525768 eV Total energy + Delta-G solvation = -3405.079747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.52058 -40.34048 -38.77363 -36.71026 -36.36177 -33.86840 -32.48725 -31.21155 -29.60056 -28.53192 -28.09099 -26.76528 -25.28957 -23.72358 -21.23660 -20.86253 -19.67502 -19.03528 -18.62674 -17.86824 -17.28375 -17.21413 -16.96926 -16.61938 -15.91612 -15.62907 -15.21671 -14.69790 -14.55448 -14.41705 -14.34636 -14.17340 -13.93767 -13.64288 -13.47875 -13.42126 -13.33061 -13.22586 -12.91121 -12.80323 -12.56983 -12.38560 -12.25656 -12.04618 -11.58725 -11.41710 -11.12726 -10.63390 -10.52458 -9.63905 -9.62437 -8.89447 -8.25439 -5.54927 1.24441 1.39524 1.48161 1.58835 1.68991 1.70775 2.29900 2.36990 2.99558 3.29136 3.38435 3.63659 3.87629 4.03744 4.16915 4.24186 4.29422 4.34654 4.45483 4.46098 4.48196 4.52426 4.53042 4.70944 4.78173 4.85760 4.91967 4.92957 4.97563 5.01259 5.03438 5.23778 5.31781 5.40737 5.55882 5.86480 6.11880 6.33490 6.59565 6.90427 7.14296 7.31174 7.58530 7.97311 8.94534 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.003613 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.813749 B = 7747.308837 C = 8219.867456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.624 5.624 3 C 0.066 3.934 4 C 0.498 3.502 5 O -0.563 6.563 6 C -0.140 4.140 7 C 0.513 3.487 8 O -0.569 6.569 9 N -0.616 5.616 10 C 0.104 3.896 11 C -0.137 4.137 12 C 0.163 3.837 13 H 0.073 0.927 14 N -0.609 5.609 15 C 0.108 3.892 16 C -0.259 4.259 17 H 0.056 0.944 18 C -0.018 4.018 19 N -0.941 5.941 20 Si 0.937 3.063 21 H -0.268 1.268 22 H -0.312 1.312 23 H -0.276 1.276 24 C 0.090 3.910 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.264 0.736 41 H 0.035 0.965 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.759 26.769 -5.500 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.359 5.359 3 C -0.075 4.075 4 C 0.286 3.714 5 O -0.440 6.440 6 C -0.182 4.182 7 C 0.301 3.699 8 O -0.446 6.446 9 N -0.352 5.352 10 C -0.017 4.017 11 C -0.176 4.176 12 C 0.055 3.945 13 H 0.092 0.908 14 N -0.331 5.331 15 C -0.036 4.036 16 C -0.388 4.388 17 H 0.074 0.926 18 C -0.215 4.215 19 N -0.585 5.585 20 Si 0.768 3.232 21 H -0.196 1.196 22 H -0.241 1.241 23 H -0.201 1.201 24 C -0.036 4.036 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.487 25.634 -5.486 29.480 hybrid contribution -0.402 -1.605 -0.328 1.686 sum -13.889 24.029 -5.814 28.357 Atomic orbital electron populations 1.21698 0.78981 1.03251 1.02072 1.47942 1.07579 1.06803 1.73578 1.22206 0.98172 0.83381 1.03727 1.20692 0.90624 0.83532 0.76585 1.90854 1.70763 1.32897 1.49478 1.21631 0.92376 0.94044 1.10119 1.20617 0.80484 0.92280 0.76476 1.90843 1.55289 1.48135 1.50364 1.48589 1.05215 1.08473 1.72880 1.22364 0.84478 0.90291 1.04617 1.23035 0.96993 0.94823 1.02755 1.21720 0.85739 0.89359 0.97669 0.90833 1.44135 1.48269 1.38283 1.02430 1.21379 0.99550 0.98477 0.84145 1.18778 1.31265 0.92060 0.96719 0.92641 1.25844 0.97928 0.97354 1.00355 1.69999 1.27514 1.13949 1.47023 0.86015 0.80718 0.76600 0.79867 1.19574 1.24091 1.20095 1.22713 0.95608 0.85183 1.00051 0.92594 0.87867 0.93489 0.90705 0.89095 0.88772 0.81976 0.82038 0.87816 0.88028 0.88504 0.90302 0.94383 0.96466 0.91805 0.92723 0.94591 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.44 127.77 1.33 2.52 16 2 N -0.62 -9.46 3.27 -871.87 -2.85 -12.31 16 3 C 0.07 0.24 10.24 127.77 1.31 1.55 16 4 C 0.50 12.16 7.67 87.66 0.67 12.83 16 5 O -0.56 -21.71 13.76 20.42 0.28 -21.43 16 6 C -0.14 -2.33 3.94 29.10 0.11 -2.22 16 7 C 0.51 15.74 7.84 87.66 0.69 16.42 16 8 O -0.57 -25.43 14.44 20.42 0.29 -25.14 16 9 N -0.62 -17.27 3.33 -811.74 -2.70 -19.97 16 10 C 0.10 1.75 6.49 86.73 0.56 2.31 16 11 C -0.14 -3.27 6.50 31.79 0.21 -3.06 16 12 C 0.16 5.93 3.54 46.39 0.16 6.09 16 13 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 14 N -0.61 -27.66 2.62 -694.99 -1.82 -29.48 16 15 C 0.11 4.42 8.33 127.77 1.06 5.48 16 16 C -0.26 -14.44 9.89 84.03 0.83 -13.61 16 17 H 0.06 3.35 8.06 -2.91 -0.02 3.32 16 18 C -0.02 -1.04 5.29 84.86 0.45 -0.60 16 19 N -0.94 -58.66 13.97 21.65 0.30 -58.35 16 20 Si 0.94 47.73 25.07 68.60 1.72 49.45 16 21 H -0.27 -12.77 6.62 99.48 0.66 -12.11 16 22 H -0.31 -16.22 7.11 99.48 0.71 -15.51 16 23 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 24 C 0.09 3.36 6.46 86.86 0.56 3.92 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.73 8.07 -2.39 -0.02 0.71 16 27 H 0.05 0.97 7.42 -2.39 -0.02 0.95 16 28 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.09 0.06 8.07 -2.39 -0.02 0.04 16 30 H 0.09 -0.01 6.44 -2.39 -0.02 -0.02 16 31 H 0.16 1.28 8.11 -2.38 -0.02 1.26 16 32 H 0.16 1.32 7.39 -2.39 -0.02 1.30 16 33 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.10 1.07 8.14 -2.38 -0.02 1.06 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 1.87 6.99 -2.39 -0.02 1.86 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.02 0.79 2.55 -2.39 -0.01 0.78 16 39 H 0.06 2.22 6.37 -2.39 -0.02 2.21 16 40 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 42 H 0.05 2.05 6.43 -2.39 -0.02 2.03 16 Total: -1.00 -90.69 332.97 4.14 -86.54 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 0.96 Total: -0.95 kcal Atomic # 6 Polarization: 23.69 SS G_CDS: 7.96 Total: 31.65 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -7.07 Total: -120.11 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: 0.58 Total: -46.57 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.72 Total: 49.45 kcal Total: -90.69 4.14 -86.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192724832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.731 kcal (2) G-P(sol) polarization free energy of solvation -90.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds