Wall clock time and date at job start Tue Mar 31 2020 02:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99773 * 2 1 4 4 N 1.34769 * 120.00007 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00147 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.47231 * 325.00784 * 5 4 2 7 7 C 1.53000 * 109.46732 * 85.00550 * 5 4 2 8 8 C 1.50696 * 109.47224 * 205.00344 * 5 4 2 9 9 O 1.21276 * 120.00631 * 341.80752 * 8 5 4 10 10 N 1.34780 * 119.99847 * 161.52953 * 8 5 4 11 11 C 1.48217 * 119.96828 * 359.33133 * 10 8 5 12 12 C 1.47602 * 110.04045 * 102.55149 * 11 10 8 13 13 C 1.53791 * 111.84718 * 58.43501 * 12 11 10 14 14 N 1.43468 * 107.95603 * 281.54258 * 13 12 11 15 15 C 1.36936 * 118.93796 * 273.63053 * 14 13 12 16 16 H 1.07994 * 120.00638 * 24.25841 * 15 14 13 17 17 C 1.38815 * 119.99592 * 204.25569 * 15 14 13 18 18 N 1.31620 * 120.00542 * 15.97714 * 17 15 14 19 19 Si 1.86805 * 119.99802 * 195.96909 * 17 15 14 20 20 H 1.48498 * 109.47041 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46991 * 120.00591 * 19 17 15 22 22 H 1.48501 * 109.47292 * 240.00438 * 19 17 15 23 23 C 1.48859 * 122.12109 * 93.61111 * 14 13 12 24 24 C 1.43619 * 119.97070 * 179.60063 * 10 8 5 25 25 H 1.08996 * 109.47399 * 270.00547 * 1 2 3 26 26 H 1.09000 * 109.46771 * 30.00798 * 1 2 3 27 27 H 1.08998 * 109.46870 * 149.99993 * 1 2 3 28 28 H 0.97005 * 120.00021 * 0.02562 * 4 2 1 29 29 H 1.09000 * 109.47223 * 76.94939 * 7 5 4 30 30 H 1.09000 * 109.46965 * 196.95178 * 7 5 4 31 31 H 1.09001 * 109.47598 * 316.94849 * 7 5 4 32 32 H 1.08998 * 109.32213 * 222.78216 * 11 10 8 33 33 H 1.08995 * 109.32349 * 342.24375 * 11 10 8 34 34 H 1.08997 * 109.10488 * 297.75511 * 12 11 10 35 35 H 1.09001 * 108.90425 * 178.97756 * 12 11 10 36 36 H 1.08999 * 109.76560 * 161.92891 * 13 12 11 37 37 H 1.08995 * 109.81090 * 41.18076 * 13 12 11 38 38 H 0.96996 * 120.00534 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.48195 * 200.65757 * 23 14 13 40 40 H 1.09002 * 109.48892 * 80.63047 * 23 14 13 41 41 H 1.08996 * 108.87272 * 31.43153 * 24 10 8 42 42 H 1.09002 * 108.87183 * 149.86010 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0095 -0.3254 -0.5883 7 6 4.1552 -1.0413 1.4383 8 6 4.1484 -2.4549 -0.5989 9 8 3.4100 -3.4132 -0.6841 10 7 5.4170 -2.5401 -1.0461 11 6 6.3127 -1.3622 -0.9609 12 6 7.2471 -1.5181 0.1710 13 6 8.0981 -2.7923 0.0394 14 7 7.2888 -3.9078 0.4379 15 6 7.2300 -4.2436 1.7641 16 1 7.4355 -3.4993 2.5193 17 6 6.9063 -5.5406 2.1380 18 7 6.9635 -6.5141 1.2541 19 14 6.3896 -5.9045 3.8960 20 1 6.4056 -4.6477 4.6868 21 1 5.0184 -6.4746 3.9009 22 1 7.3336 -6.8804 4.4975 23 6 6.5106 -4.7119 -0.5439 24 6 5.8980 -3.7703 -1.6100 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6959 -2.0072 0.0005 29 1 4.0573 -2.0019 1.9440 30 1 5.2032 -0.7415 1.4274 31 1 3.5682 -0.2907 1.9675 32 1 6.8781 -1.2713 -1.8884 33 1 5.7135 -0.4631 -0.8173 34 1 6.6779 -1.5656 1.0994 35 1 7.9078 -0.6519 0.2054 36 1 8.9717 -2.7206 0.6872 37 1 8.4162 -2.9188 -0.9954 38 1 6.7376 -7.4205 1.5154 39 1 5.7119 -5.2436 -0.0265 40 1 7.1705 -5.4306 -1.0297 41 1 5.0687 -4.2823 -2.0981 42 1 6.6579 -3.5422 -2.3575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194754041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:18 Heat of formation + Delta-G solvation = -38.671484 kcal Electronic energy + Delta-G solvation = -24207.712688 eV Core-core repulsion = 20802.942646 eV Total energy + Delta-G solvation = -3404.770042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41361 -39.15922 -37.08145 -34.92140 -34.41947 -32.37332 -31.67436 -30.71463 -28.90460 -27.70365 -25.47931 -24.54348 -23.27335 -22.03751 -20.46720 -19.70819 -18.68323 -17.49482 -16.88442 -16.51707 -15.92971 -15.46646 -15.29615 -14.87339 -14.43606 -13.96729 -13.78468 -13.73107 -13.32503 -13.04993 -12.86498 -12.67347 -12.39946 -12.34454 -12.25945 -11.98924 -11.60825 -11.42508 -11.22751 -10.95096 -10.74064 -10.59733 -10.32529 -10.17954 -9.94737 -9.80240 -9.72383 -9.41388 -9.06728 -8.45380 -8.10895 -6.70685 -5.77560 -3.18831 2.58168 2.93814 3.01570 3.37419 3.45513 3.46414 3.63667 4.51249 4.58204 4.77078 5.00931 5.11773 5.21027 5.27607 5.31310 5.41558 5.48519 5.58279 5.64306 5.72429 5.80812 5.83233 5.94986 6.14210 6.16123 6.29930 6.36230 6.38838 6.40675 6.46157 6.76044 6.93172 6.98323 7.41910 7.51808 7.60730 7.78155 7.85157 8.18657 8.45150 8.54266 9.21771 9.90492 10.35350 11.30553 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.005929 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.042215 B = 4721.103964 C = 5290.018450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.553 6.553 4 N -0.712 5.712 5 C 0.125 3.875 6 H 0.105 0.895 7 C -0.158 4.158 8 C 0.514 3.486 9 O -0.544 6.544 10 N -0.576 5.576 11 C 0.117 3.883 12 C -0.180 4.180 13 C 0.163 3.837 14 N -0.590 5.590 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.006 3.994 18 N -0.904 5.904 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.168 3.832 24 C 0.089 3.911 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.410 0.590 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.253 0.747 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 11.205 -5.075 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.299 3.701 3 O -0.432 6.432 4 N -0.366 5.366 5 C 0.017 3.983 6 H 0.123 0.877 7 C -0.216 4.216 8 C 0.301 3.699 9 O -0.422 6.422 10 N -0.307 5.307 11 C -0.005 4.005 12 C -0.221 4.221 13 C 0.034 3.966 14 N -0.312 5.312 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.549 5.549 19 Si 0.727 3.273 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.042 3.958 24 C -0.036 4.036 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.248 0.752 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.960 11.238 -5.138 14.183 hybrid contribution -0.395 -0.735 1.018 1.316 sum -7.355 10.503 -4.120 13.468 Atomic orbital electron populations 1.21864 0.91535 1.04849 1.04819 1.20798 0.90648 0.83251 0.75395 1.90706 1.70809 1.31392 1.50251 1.45974 1.06286 1.09645 1.74728 1.20814 0.81403 0.97186 0.98881 0.87696 1.22191 1.02298 1.03277 0.93836 1.20279 0.82359 0.89233 0.78044 1.90653 1.56122 1.38909 1.56565 1.47295 1.10528 1.12854 1.59981 1.20963 0.92661 0.87137 0.99781 1.22166 0.99546 1.01110 0.99244 1.20237 0.92277 0.86731 0.97337 1.43697 1.50502 1.32591 1.04406 1.19159 1.43266 0.93090 0.82948 0.91740 1.24945 1.01553 0.95475 0.97275 1.70023 1.51821 0.99557 1.33479 0.86315 0.78182 0.77912 0.84903 1.20383 1.21620 1.21770 1.21853 0.95005 0.90207 0.88690 1.22041 0.98560 0.85763 0.97247 0.88807 0.88919 0.90052 0.75249 0.91219 0.90177 0.91616 0.91327 0.90967 0.90646 0.92346 0.93547 0.94830 0.93726 0.90267 0.94286 0.91071 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.30 36.01 0.37 -1.05 16 2 C 0.51 6.66 7.83 -10.99 -0.09 6.57 16 3 O -0.55 -9.14 16.76 5.56 0.09 -9.05 16 4 N -0.71 -9.73 5.04 -54.93 -0.28 -10.00 16 5 C 0.13 1.91 2.15 -69.08 -0.15 1.76 16 6 H 0.11 1.54 5.83 -51.93 -0.30 1.24 16 7 C -0.16 -2.41 9.26 37.16 0.34 -2.07 16 8 C 0.51 9.30 6.85 -10.99 -0.08 9.22 16 9 O -0.54 -11.42 15.44 5.56 0.09 -11.34 16 10 N -0.58 -9.99 2.45 -176.41 -0.43 -10.42 16 11 C 0.12 1.66 5.16 -5.70 -0.03 1.63 16 12 C -0.18 -2.82 5.39 -28.93 -0.16 -2.98 16 13 C 0.16 3.12 5.63 -5.23 -0.03 3.09 16 14 N -0.59 -13.93 2.54 -172.00 -0.44 -14.36 16 15 C -0.25 -6.77 9.28 -15.06 -0.14 -6.91 16 16 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 17 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 18 N -0.90 -26.08 10.94 55.49 0.61 -25.47 16 19 Si 0.90 21.95 29.58 -169.99 -5.03 16.92 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C 0.17 3.93 5.19 -1.75 -0.01 3.92 16 24 C 0.09 1.66 5.26 -4.58 -0.02 1.64 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.41 5.36 7.73 -40.82 -0.32 5.05 16 29 H 0.07 1.21 8.02 -51.93 -0.42 0.80 16 30 H 0.08 1.18 4.99 -51.93 -0.26 0.92 16 31 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 32 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.07 0.90 5.44 -51.93 -0.28 0.62 16 34 H 0.08 1.34 5.56 -51.93 -0.29 1.05 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.91 8.02 -51.93 -0.42 0.50 16 37 H 0.03 0.60 7.59 -51.93 -0.39 0.20 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.08 2.18 6.49 -51.93 -0.34 1.84 16 40 H 0.04 0.97 8.01 -51.93 -0.42 0.56 16 41 H 0.07 1.36 7.36 -51.93 -0.38 0.98 16 42 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16 LS Contribution 328.88 15.07 4.96 4.96 Total: -1.00 -32.58 328.88 -6.79 -39.37 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.29 Total: 4.50 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -0.07 Total: 14.90 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.54 Total: -60.26 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.18 Total: -20.38 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.58 -6.79 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194754041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.696 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds