Wall clock time and date at job start Tue Mar 31 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46898 * 2 1 4 4 C 1.34776 * 119.99831 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00147 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00050 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47286 * 180.02562 * 6 4 3 8 8 O 1.21288 * 119.99891 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00110 * 180.02562 * 7 6 4 10 10 C 1.48207 * 119.96907 * 180.02562 * 9 7 6 11 11 C 1.47136 * 110.34354 * 102.47137 * 10 9 7 12 12 C 1.53789 * 111.84457 * 58.29499 * 11 10 9 13 13 N 1.43465 * 107.95825 * 281.67085 * 12 11 10 14 14 C 1.36944 * 118.93846 * 273.60773 * 13 12 11 15 15 H 1.08000 * 119.99821 * 24.61982 * 14 13 12 16 16 C 1.38805 * 120.00011 * 204.62172 * 14 13 12 17 17 N 1.31621 * 119.99891 * 203.00951 * 16 14 13 18 18 Si 1.86805 * 120.00190 * 23.00689 * 16 14 13 19 19 H 1.48500 * 109.47330 * 265.74629 * 18 16 14 20 20 H 1.48496 * 109.47260 * 145.74620 * 18 16 14 21 21 H 1.48498 * 109.47188 * 25.74356 * 18 16 14 22 22 C 1.48859 * 122.12251 * 93.88897 * 13 12 11 23 23 C 1.43619 * 119.96666 * 359.97438 * 9 7 6 24 24 H 1.09002 * 109.47296 * 299.99420 * 1 2 3 25 25 H 1.09003 * 109.47418 * 59.99580 * 1 2 3 26 26 H 1.09002 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46774 * 240.00526 * 2 1 3 28 28 H 1.09003 * 109.47418 * 120.00420 * 2 1 3 29 29 H 0.97003 * 120.00488 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46705 * 60.00079 * 6 4 3 31 31 H 1.08994 * 109.46933 * 300.00441 * 6 4 3 32 32 H 1.08997 * 109.32692 * 342.19653 * 10 9 7 33 33 H 1.09005 * 109.18498 * 222.64715 * 10 9 7 34 34 H 1.09001 * 109.00324 * 297.68618 * 11 10 9 35 35 H 1.09000 * 108.94712 * 178.86542 * 11 10 9 36 36 H 1.08997 * 109.76815 * 162.05216 * 12 11 10 37 37 H 1.09006 * 109.80641 * 41.30596 * 12 11 10 38 38 H 0.96998 * 119.99910 * 5.15680 * 17 16 14 39 39 H 1.08995 * 109.48053 * 80.34635 * 22 13 12 40 40 H 1.09000 * 109.48016 * 200.38205 * 22 13 12 41 41 H 1.09003 * 108.87915 * 31.46748 * 23 9 7 42 42 H 1.09004 * 108.87092 * 150.00858 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3527 3.0484 0.0010 8 8 5.9592 1.9980 0.0009 9 7 6.0266 4.2156 0.0020 10 6 7.5086 4.2148 0.0013 11 6 8.0197 4.5140 -1.3457 12 6 7.5157 5.8728 -1.8602 13 7 6.1644 5.7016 -2.3108 14 6 5.9424 5.2828 -3.5955 15 1 6.7008 4.7190 -4.1184 16 6 4.7426 5.5829 -4.2257 17 7 4.3251 4.8443 -5.2321 18 14 3.7204 7.0348 -3.6457 19 1 2.7015 6.5656 -2.6726 20 1 3.0423 7.6595 -4.8098 21 1 4.6047 8.0337 -2.9934 22 6 4.9959 5.9705 -1.4287 23 6 5.3077 5.4590 0.0026 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.3880 2.1185 0.0004 30 1 3.4820 3.5619 0.8912 31 1 3.4826 3.5624 -0.8888 32 1 7.8690 3.2350 0.3145 33 1 7.8676 4.9711 0.6994 34 1 7.6934 3.7316 -2.0310 35 1 9.1092 4.5276 -1.3159 36 1 8.1405 6.2083 -2.6879 37 1 7.5455 6.6068 -1.0549 38 1 4.8165 4.0473 -5.4853 39 1 4.8005 7.0424 -1.4008 40 1 4.1199 5.4511 -1.8174 41 1 4.3695 5.3236 0.5406 42 1 5.9045 6.2110 0.5188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195588850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:01 Heat of formation + Delta-G solvation = -37.963862 kcal Electronic energy + Delta-G solvation = -23887.646207 eV Core-core repulsion = 20482.906850 eV Total energy + Delta-G solvation = -3404.739357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.21651 -38.93473 -36.99474 -35.10151 -34.27807 -33.08500 -31.46951 -31.18651 -29.31737 -27.59660 -25.81833 -23.37531 -23.12690 -22.21441 -20.57489 -19.84351 -18.60620 -17.50298 -17.16693 -16.31725 -15.97264 -15.67144 -15.54587 -15.08757 -14.73643 -14.31525 -13.98818 -13.56369 -13.43528 -13.19458 -12.83402 -12.78571 -12.54561 -12.37813 -12.23153 -11.93503 -11.78099 -11.56569 -11.43864 -11.35998 -10.96721 -10.39467 -10.29923 -10.02439 -9.75787 -9.74506 -9.21170 -9.00272 -8.96847 -8.54852 -8.11819 -6.97895 -6.33153 -3.29561 2.85369 3.01595 3.17955 3.30055 3.47962 3.61912 3.65658 4.56063 4.70396 4.83420 4.89115 4.97816 5.03395 5.21868 5.22851 5.34100 5.36934 5.48680 5.55449 5.62103 5.69144 5.78758 5.82148 5.82731 5.89495 5.93219 6.06195 6.29502 6.33725 6.41564 6.50887 6.51818 6.71851 6.92142 7.14380 7.57147 7.86908 8.06176 8.43391 8.44675 8.72273 9.03743 9.65093 10.13034 11.11525 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.006583 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.526946 B = 4252.131248 C = 5402.463142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.739 5.739 4 C 0.515 3.485 5 O -0.495 6.495 6 C -0.167 4.167 7 C 0.523 3.477 8 O -0.508 6.508 9 N -0.591 5.591 10 C 0.132 3.868 11 C -0.169 4.169 12 C 0.163 3.837 13 N -0.598 5.598 14 C -0.344 4.344 15 H 0.066 0.934 16 C -0.015 4.015 17 N -0.919 5.919 18 Si 1.055 2.945 19 H -0.297 1.297 20 H -0.301 1.301 21 H -0.286 1.286 22 C 0.100 3.900 23 C 0.093 3.907 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.398 0.602 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -0.103 14.362 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.395 5.395 4 C 0.299 3.701 5 O -0.367 6.367 6 C -0.209 4.209 7 C 0.309 3.691 8 O -0.382 6.382 9 N -0.325 5.325 10 C 0.011 3.989 11 C -0.210 4.210 12 C 0.035 3.965 13 N -0.321 5.321 14 C -0.473 4.473 15 H 0.084 0.916 16 C -0.216 4.216 17 N -0.558 5.558 18 Si 0.887 3.113 19 H -0.225 1.225 20 H -0.229 1.229 21 H -0.212 1.212 22 C -0.027 4.027 23 C -0.034 4.034 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.232 0.768 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.743 -0.513 14.035 15.173 hybrid contribution 0.886 -0.318 0.128 0.950 sum -4.857 -0.831 14.163 14.996 Atomic orbital electron populations 1.22000 0.94591 1.03024 1.02526 1.21231 0.93973 0.83257 1.02287 1.46031 1.07028 1.08713 1.77687 1.20074 0.82146 0.90970 0.76890 1.90834 1.54430 1.45549 1.45868 1.21664 0.96131 0.96715 1.06438 1.19750 0.88681 0.83773 0.76901 1.90788 1.69307 1.30324 1.47747 1.47332 1.06653 1.05238 1.73228 1.20531 0.78757 1.02007 0.97607 1.21827 0.98987 1.02703 0.97490 1.20323 0.86566 0.92718 0.96877 1.43904 0.99182 1.78747 1.10235 1.20247 1.04569 1.32560 0.89899 0.91601 1.26134 0.96488 1.02888 0.96055 1.70822 1.39280 1.15397 1.30272 0.84015 0.75347 0.77469 0.74497 1.22528 1.22899 1.21223 1.22699 0.92120 0.98095 0.89753 1.21871 0.96577 0.86340 0.98588 0.92100 0.91815 0.90983 0.91602 0.91783 0.76767 0.86650 0.85678 0.90285 0.92074 0.91156 0.92504 0.93106 0.94682 0.92575 0.94175 0.91225 0.91180 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.03 37.16 0.37 -0.89 16 2 C 0.12 1.31 6.39 -4.04 -0.03 1.29 16 3 N -0.74 -9.16 5.56 -60.29 -0.33 -9.50 16 4 C 0.51 8.67 7.82 -10.98 -0.09 8.58 16 5 O -0.50 -10.83 14.18 -18.96 -0.27 -11.10 16 6 C -0.17 -2.54 4.74 -29.03 -0.14 -2.68 16 7 C 0.52 10.11 7.66 -10.99 -0.08 10.03 16 8 O -0.51 -11.99 13.61 -18.97 -0.26 -12.25 16 9 N -0.59 -10.26 2.46 -176.47 -0.43 -10.70 16 10 C 0.13 2.19 5.70 -5.92 -0.03 2.16 16 11 C -0.17 -3.09 5.64 -29.14 -0.16 -3.25 16 12 C 0.16 3.16 5.63 -5.24 -0.03 3.13 16 13 N -0.60 -13.61 2.33 -171.82 -0.40 -14.01 16 14 C -0.34 -9.47 9.55 -15.06 -0.14 -9.61 16 15 H 0.07 2.00 8.06 -52.49 -0.42 1.58 16 16 C -0.01 -0.41 5.14 -17.43 -0.09 -0.50 16 17 N -0.92 -28.19 13.70 55.49 0.76 -27.43 16 18 Si 1.05 24.87 24.43 -169.99 -4.15 20.72 16 19 H -0.30 -6.33 6.75 56.52 0.38 -5.95 16 20 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.29 -6.35 6.41 56.52 0.36 -5.99 16 22 C 0.10 1.93 4.54 -1.59 -0.01 1.93 16 23 C 0.09 1.39 5.05 -4.43 -0.02 1.37 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.40 3.65 8.47 -40.82 -0.35 3.31 16 30 H 0.12 1.23 7.37 -51.93 -0.38 0.85 16 31 H 0.13 1.94 7.34 -51.93 -0.38 1.55 16 32 H 0.08 1.39 7.12 -51.93 -0.37 1.02 16 33 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 34 H 0.07 1.60 7.91 -51.93 -0.41 1.19 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 1.02 8.02 -51.93 -0.42 0.61 16 37 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 38 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 39 H 0.04 0.76 5.81 -51.93 -0.30 0.46 16 40 H 0.07 1.47 4.74 -51.93 -0.25 1.22 16 41 H 0.07 0.82 6.38 -51.93 -0.33 0.49 16 42 H 0.07 0.91 7.72 -51.93 -0.40 0.51 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -36.94 326.61 -7.19 -44.13 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.57 Total: 3.66 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -0.45 Total: 11.55 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.41 Total: -61.63 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.53 Total: -23.35 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -4.15 Total: 20.72 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.94 -7.19 -44.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195588850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.168 kcal (2) G-P(sol) polarization free energy of solvation -36.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds