Wall clock time and date at job start Tue Mar 31 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46898 * 2 1 4 4 C 1.34776 * 119.99831 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00147 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00050 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47286 * 180.02562 * 6 4 3 8 8 O 1.21288 * 119.99891 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00110 * 180.02562 * 7 6 4 10 10 C 1.48207 * 119.96907 * 180.02562 * 9 7 6 11 11 C 1.47136 * 110.34354 * 102.47137 * 10 9 7 12 12 C 1.53789 * 111.84457 * 58.29499 * 11 10 9 13 13 N 1.43465 * 107.95825 * 281.67085 * 12 11 10 14 14 C 1.36944 * 118.93846 * 273.60773 * 13 12 11 15 15 H 1.08000 * 119.99821 * 24.61982 * 14 13 12 16 16 C 1.38805 * 120.00011 * 204.62172 * 14 13 12 17 17 N 1.31621 * 119.99891 * 203.00951 * 16 14 13 18 18 Si 1.86805 * 120.00190 * 23.00689 * 16 14 13 19 19 H 1.48500 * 109.47330 * 265.74629 * 18 16 14 20 20 H 1.48496 * 109.47260 * 145.74620 * 18 16 14 21 21 H 1.48498 * 109.47188 * 25.74356 * 18 16 14 22 22 C 1.48859 * 122.12251 * 93.88897 * 13 12 11 23 23 C 1.43619 * 119.96666 * 359.97438 * 9 7 6 24 24 H 1.09002 * 109.47296 * 299.99420 * 1 2 3 25 25 H 1.09003 * 109.47418 * 59.99580 * 1 2 3 26 26 H 1.09002 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46774 * 240.00526 * 2 1 3 28 28 H 1.09003 * 109.47418 * 120.00420 * 2 1 3 29 29 H 0.97003 * 120.00488 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46705 * 60.00079 * 6 4 3 31 31 H 1.08994 * 109.46933 * 300.00441 * 6 4 3 32 32 H 1.08997 * 109.32692 * 342.19653 * 10 9 7 33 33 H 1.09005 * 109.18498 * 222.64715 * 10 9 7 34 34 H 1.09001 * 109.00324 * 297.68618 * 11 10 9 35 35 H 1.09000 * 108.94712 * 178.86542 * 11 10 9 36 36 H 1.08997 * 109.76815 * 162.05216 * 12 11 10 37 37 H 1.09006 * 109.80641 * 41.30596 * 12 11 10 38 38 H 0.96998 * 119.99910 * 5.15680 * 17 16 14 39 39 H 1.08995 * 109.48053 * 80.34635 * 22 13 12 40 40 H 1.09000 * 109.48016 * 200.38205 * 22 13 12 41 41 H 1.09003 * 108.87915 * 31.46748 * 23 9 7 42 42 H 1.09004 * 108.87092 * 150.00858 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8457 3.0484 0.0011 7 6 5.3527 3.0484 0.0010 8 8 5.9592 1.9980 0.0009 9 7 6.0266 4.2156 0.0020 10 6 7.5086 4.2148 0.0013 11 6 8.0197 4.5140 -1.3457 12 6 7.5157 5.8728 -1.8602 13 7 6.1644 5.7016 -2.3108 14 6 5.9424 5.2828 -3.5955 15 1 6.7008 4.7190 -4.1184 16 6 4.7426 5.5829 -4.2257 17 7 4.3251 4.8443 -5.2321 18 14 3.7204 7.0348 -3.6457 19 1 2.7015 6.5656 -2.6726 20 1 3.0423 7.6595 -4.8098 21 1 4.6047 8.0337 -2.9934 22 6 4.9959 5.9705 -1.4287 23 6 5.3077 5.4590 0.0026 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.3880 2.1185 0.0004 30 1 3.4820 3.5619 0.8912 31 1 3.4826 3.5624 -0.8888 32 1 7.8690 3.2350 0.3145 33 1 7.8676 4.9711 0.6994 34 1 7.6934 3.7316 -2.0310 35 1 9.1092 4.5276 -1.3159 36 1 8.1405 6.2083 -2.6879 37 1 7.5455 6.6068 -1.0549 38 1 4.8165 4.0473 -5.4853 39 1 4.8005 7.0424 -1.4008 40 1 4.1199 5.4511 -1.8174 41 1 4.3695 5.3236 0.5406 42 1 5.9045 6.2110 0.5188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195588850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:00 Heat of formation + Delta-G solvation = -66.483480 kcal Electronic energy + Delta-G solvation = -23888.882910 eV Core-core repulsion = 20482.906850 eV Total energy + Delta-G solvation = -3405.976061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59025 -40.27149 -38.57361 -36.29777 -35.91286 -34.58464 -33.40151 -32.34779 -30.40494 -29.14795 -27.38793 -24.89095 -24.48521 -23.43150 -21.88758 -21.49967 -20.01770 -19.30003 -18.57897 -17.67869 -17.33752 -16.97757 -16.76757 -16.57450 -16.11892 -15.67235 -15.59160 -15.09384 -14.76737 -14.61459 -14.41266 -14.24281 -13.94268 -13.67722 -13.32968 -13.27955 -13.01037 -12.77219 -12.69759 -12.53728 -12.35313 -11.97281 -11.92175 -11.57858 -11.44358 -11.27355 -11.10599 -10.62915 -10.44724 -10.09867 -9.54471 -8.91792 -8.56187 -5.45958 1.44657 1.55816 1.63774 1.70112 1.80069 1.91215 2.46005 2.62309 3.09220 3.40325 3.53751 3.83414 4.03992 4.10984 4.15315 4.16408 4.20467 4.25020 4.38952 4.41125 4.50640 4.51605 4.64115 4.73633 4.82260 4.91546 4.93185 4.97321 5.02397 5.05102 5.19657 5.25565 5.42015 5.47903 5.75254 5.80699 6.26023 6.48716 6.57997 6.96615 7.22600 7.37103 7.73264 8.05802 8.85843 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.006583 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.526946 B = 4252.131248 C = 5402.463142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.719 5.719 4 C 0.506 3.494 5 O -0.558 6.558 6 C -0.158 4.158 7 C 0.507 3.493 8 O -0.565 6.565 9 N -0.590 5.590 10 C 0.130 3.870 11 C -0.156 4.156 12 C 0.160 3.840 13 N -0.613 5.613 14 C -0.331 4.331 15 H 0.009 0.991 16 C -0.075 4.075 17 N -0.958 5.958 18 Si 1.105 2.895 19 H -0.253 1.253 20 H -0.319 1.319 21 H -0.257 1.257 22 C 0.087 3.913 23 C 0.092 3.908 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.418 0.582 30 H 0.173 0.827 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.007 0.993 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.082 0.918 38 H 0.239 0.761 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.116 0.884 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 3.189 18.097 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 N -0.374 5.374 4 C 0.291 3.709 5 O -0.435 6.435 6 C -0.200 4.200 7 C 0.295 3.705 8 O -0.443 6.443 9 N -0.322 5.322 10 C 0.008 3.992 11 C -0.197 4.197 12 C 0.033 3.967 13 N -0.336 5.336 14 C -0.461 4.461 15 H 0.027 0.973 16 C -0.267 4.267 17 N -0.601 5.601 18 Si 0.929 3.071 19 H -0.178 1.178 20 H -0.248 1.248 21 H -0.181 1.181 22 C -0.037 4.037 23 C -0.033 4.033 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.255 0.745 30 H 0.190 0.810 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.026 0.974 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.134 0.866 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.826 2.832 17.830 19.677 hybrid contribution 1.647 -1.405 -1.079 2.419 sum -6.179 1.427 16.750 17.911 Atomic orbital electron populations 1.21941 0.91177 1.04270 1.03545 1.21358 0.96646 0.82435 1.00907 1.45922 1.05998 1.09976 1.75523 1.20528 0.83020 0.91217 0.76130 1.90816 1.56271 1.47343 1.49060 1.21704 0.93214 0.96114 1.08990 1.20568 0.90478 0.83568 0.75920 1.90769 1.70746 1.32490 1.50251 1.47518 1.07028 1.05754 1.71923 1.20613 0.78868 1.02628 0.97055 1.21689 1.00629 1.00130 0.97240 1.20468 0.84716 0.93898 0.97598 1.44014 1.01659 1.78930 1.09027 1.20009 1.03071 1.30636 0.92422 0.97331 1.27644 0.98469 1.04907 0.95728 1.70983 1.40213 1.15857 1.33008 0.83425 0.75078 0.73804 0.74780 1.17761 1.24846 1.18147 1.22952 0.89956 0.99324 0.91509 1.22070 0.99405 0.85729 0.96099 0.90221 0.91507 0.89716 0.94050 0.92331 0.74466 0.80972 0.85507 0.92138 0.87126 0.97447 0.90054 0.95001 0.90000 0.95200 0.91794 0.93077 0.86603 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.03 71.98 0.72 -1.25 16 2 C 0.11 2.43 6.39 86.38 0.55 2.98 16 3 N -0.72 -16.72 5.56 -463.05 -2.57 -19.29 16 4 C 0.51 16.81 7.82 87.66 0.69 17.49 16 5 O -0.56 -25.50 14.18 20.42 0.29 -25.21 16 6 C -0.16 -4.42 4.74 29.10 0.14 -4.28 16 7 C 0.51 19.13 7.66 87.66 0.67 19.80 16 8 O -0.56 -27.67 13.61 20.39 0.28 -27.39 16 9 N -0.59 -18.76 2.46 -830.63 -2.04 -20.80 16 10 C 0.13 4.01 5.70 84.23 0.48 4.49 16 11 C -0.16 -5.65 5.64 29.04 0.16 -5.48 16 12 C 0.16 5.90 5.63 87.21 0.49 6.39 16 13 N -0.61 -27.03 2.33 -697.52 -1.62 -28.66 16 14 C -0.33 -18.91 9.55 84.03 0.80 -18.11 16 15 H 0.01 0.58 8.06 -2.91 -0.02 0.56 16 16 C -0.07 -4.30 5.14 84.86 0.44 -3.86 16 17 N -0.96 -61.61 13.70 21.65 0.30 -61.31 16 18 Si 1.11 48.36 24.43 68.60 1.68 50.04 16 19 H -0.25 -9.21 6.75 99.48 0.67 -8.54 16 20 H -0.32 -14.89 7.11 99.48 0.71 -14.19 16 21 H -0.26 -9.93 6.41 99.48 0.64 -9.29 16 22 C 0.09 2.99 4.54 86.66 0.39 3.38 16 23 C 0.09 2.20 5.05 87.65 0.44 2.64 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.42 6.32 8.47 -92.71 -0.79 5.54 16 30 H 0.17 2.69 7.37 -2.39 -0.02 2.67 16 31 H 0.13 3.57 7.34 -2.39 -0.02 3.55 16 32 H 0.06 2.12 7.12 -2.39 -0.02 2.10 16 33 H 0.11 2.39 8.05 -2.38 -0.02 2.37 16 34 H 0.01 0.32 7.91 -2.39 -0.02 0.30 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.03 1.27 8.02 -2.39 -0.02 1.25 16 37 H 0.08 2.31 7.59 -2.38 -0.02 2.29 16 38 H 0.24 16.07 8.73 -92.71 -0.81 15.26 16 39 H 0.06 1.96 5.81 -2.39 -0.01 1.94 16 40 H 0.05 1.95 4.74 -2.39 -0.01 1.93 16 41 H 0.12 1.80 6.38 -2.39 -0.02 1.79 16 42 H 0.11 1.90 7.72 -2.38 -0.02 1.88 16 Total: -1.00 -91.96 326.61 2.37 -89.59 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.09 Total: 18.83 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 5.98 Total: 24.21 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -5.95 Total: -130.07 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: 0.57 Total: -52.60 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.68 Total: 50.04 kcal Total: -91.96 2.37 -89.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195588850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.108 kcal (2) G-P(sol) polarization free energy of solvation -91.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds