Wall clock time and date at job start Tue Mar 31 2020 02:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00190 * 2 1 4 4 N 1.34776 * 119.99974 * 180.27631 * 2 1 3 5 5 C 1.46505 * 120.00191 * 179.72391 * 4 2 1 6 6 H 1.08998 * 109.47205 * 325.00249 * 5 4 2 7 7 C 1.53003 * 109.46903 * 85.00020 * 5 4 2 8 8 C 1.50695 * 109.47010 * 204.99813 * 5 4 2 9 9 O 1.21274 * 120.00499 * 337.26734 * 8 5 4 10 10 N 1.34779 * 119.99526 * 157.26767 * 8 5 4 11 11 C 1.46927 * 120.63290 * 4.79284 * 10 8 5 12 12 C 1.52758 * 109.00943 * 233.58455 * 11 10 8 13 13 C 1.53041 * 109.38543 * 305.58845 * 12 11 10 14 14 N 1.46497 * 109.44524 * 181.25493 * 13 12 11 15 15 C 1.36936 * 120.00374 * 84.94380 * 14 13 12 16 16 H 1.08000 * 119.99906 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00382 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46815 * 90.00286 * 19 17 15 21 21 H 1.48505 * 109.47115 * 210.00249 * 19 17 15 22 22 H 1.48497 * 109.47255 * 330.00776 * 19 17 15 23 23 C 1.53038 * 109.53669 * 61.24030 * 13 12 11 24 24 C 1.46925 * 120.63037 * 185.07671 * 10 8 5 25 25 H 1.09003 * 109.46857 * 89.99450 * 1 2 3 26 26 H 1.08992 * 109.47479 * 209.99912 * 1 2 3 27 27 H 1.09001 * 109.47317 * 330.00128 * 1 2 3 28 28 H 0.96994 * 119.99743 * 359.72417 * 4 2 1 29 29 H 1.08996 * 109.47431 * 176.07413 * 7 5 4 30 30 H 1.09003 * 109.47340 * 296.07459 * 7 5 4 31 31 H 1.09002 * 109.46913 * 56.06965 * 7 5 4 32 32 H 1.09003 * 109.58635 * 353.42326 * 11 10 8 33 33 H 1.09005 * 109.58382 * 113.84669 * 11 10 8 34 34 H 1.09006 * 109.56030 * 185.55426 * 12 11 10 35 35 H 1.08999 * 109.35948 * 65.50056 * 12 11 10 36 36 H 1.09002 * 109.45899 * 301.22168 * 13 12 11 37 37 H 0.97000 * 119.99756 * 264.93639 * 14 13 12 38 38 H 0.97004 * 120.00092 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.49672 * 178.68289 * 23 13 12 40 40 H 1.09007 * 109.49733 * 58.58731 * 23 13 12 41 41 H 1.09002 * 109.58970 * 246.15831 * 24 10 8 42 42 H 1.09007 * 109.58541 * 6.43941 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0056 5 6 3.6458 -1.1672 -0.0117 6 1 4.0067 -0.3240 -0.6006 7 6 4.1618 -1.0450 1.4235 8 6 4.1456 -2.4535 -0.6173 9 8 3.4344 -3.4357 -0.6270 10 7 5.3830 -2.5121 -1.1483 11 6 6.2945 -1.3639 -1.0513 12 6 6.7910 -1.0032 -2.4501 13 6 7.4070 -2.2414 -3.1055 14 7 7.9106 -1.8898 -4.4354 15 6 9.1630 -1.3536 -4.5737 16 1 9.7794 -1.1895 -3.7021 17 6 9.6404 -1.0209 -5.8339 18 7 8.8891 -1.2204 -6.8960 19 14 11.3486 -0.2887 -6.0223 20 1 12.3374 -1.3809 -6.2087 21 1 11.3745 0.6096 -7.2046 22 1 11.6919 0.4870 -4.8035 23 6 6.3435 -3.3342 -3.2354 24 6 5.8439 -3.7234 -1.8405 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6958 -2.0072 -0.0056 29 1 5.2495 -1.1150 1.4258 30 1 3.8588 -0.0834 1.8379 31 1 3.7445 -1.8494 2.0293 32 1 5.7657 -0.5128 -0.6220 33 1 7.1446 -1.6244 -0.4207 34 1 7.5429 -0.2171 -2.3791 35 1 5.9527 -0.6522 -3.0518 36 1 8.2296 -2.6065 -2.4905 37 1 7.3570 -2.0369 -5.2182 38 1 9.2226 -0.9875 -7.7767 39 1 6.7768 -4.2073 -3.7234 40 1 5.5093 -2.9612 -3.8297 41 1 6.6565 -4.1803 -1.2756 42 1 5.0185 -4.4298 -1.9297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199195418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:33 Heat of formation + Delta-G solvation = -65.538126 kcal Electronic energy + Delta-G solvation = -22886.965334 eV Core-core repulsion = 19481.030267 eV Total energy + Delta-G solvation = -3405.935067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.71655 -39.41257 -37.54187 -35.17802 -34.59150 -32.39417 -31.63964 -30.73187 -29.39033 -28.93398 -25.55597 -24.13673 -23.07938 -22.40220 -20.83886 -20.24252 -19.14254 -17.75300 -17.09676 -16.85481 -16.30005 -15.70555 -15.25772 -15.01723 -14.85408 -14.04726 -13.96758 -13.75612 -13.62910 -13.43380 -13.38100 -13.03032 -12.76996 -12.44488 -12.41409 -12.26888 -12.00393 -11.79260 -11.62748 -11.00641 -10.91508 -10.85810 -10.54554 -10.26016 -10.14469 -9.90935 -9.83925 -9.70393 -9.36391 -8.94543 -8.62841 -7.01777 -5.80711 -3.10311 2.32491 2.48086 2.71891 3.21721 3.40768 3.45972 3.47803 4.23690 4.54640 4.58444 4.84454 4.84900 4.95983 5.03406 5.14002 5.22134 5.27240 5.32427 5.34743 5.48887 5.49680 5.57773 5.59680 5.65731 5.86076 5.87833 5.91966 6.11393 6.17072 6.30060 6.33407 6.44670 6.53775 6.82656 6.98651 7.27878 7.34166 7.65292 7.96883 8.02166 8.37351 9.48693 10.05603 10.40133 11.41781 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.003567 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.546106 B = 7847.052978 C = 8243.246243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.546 6.546 4 N -0.715 5.715 5 C 0.121 3.879 6 H 0.113 0.887 7 C -0.158 4.158 8 C 0.514 3.486 9 O -0.548 6.548 10 N -0.598 5.598 11 C 0.101 3.899 12 C -0.153 4.153 13 C 0.179 3.821 14 N -0.724 5.724 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.139 4.139 24 C 0.116 3.884 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.410 0.590 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.596 -1.854 16.336 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.424 6.424 4 N -0.370 5.370 5 C 0.013 3.987 6 H 0.131 0.869 7 C -0.216 4.216 8 C 0.301 3.699 9 O -0.427 6.427 10 N -0.330 5.330 11 C -0.022 4.022 12 C -0.194 4.194 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.178 4.178 24 C -0.006 4.006 25 H 0.114 0.886 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.247 0.753 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.333 -1.556 16.312 21.125 hybrid contribution 0.643 0.065 -0.563 0.857 sum -12.690 -1.491 15.749 20.281 Atomic orbital electron populations 1.21865 0.91253 1.04897 1.05025 1.20853 0.90744 0.83178 0.75240 1.90738 1.70729 1.31331 1.49569 1.45926 1.05838 1.09736 1.75477 1.20830 0.81980 0.97268 0.98648 0.86919 1.22111 1.01898 1.03469 0.94145 1.20471 0.81621 0.89654 0.78149 1.90651 1.56157 1.37133 1.58735 1.48128 1.13640 1.16564 1.54692 1.21945 0.93057 0.87564 0.99644 1.22627 1.01263 1.01858 0.93679 1.20161 0.93215 0.90938 0.88815 1.42430 1.16675 1.75271 1.02038 1.19226 0.91762 1.33645 0.92624 0.91132 1.24755 0.98447 1.02115 0.95547 1.69662 1.36730 1.53822 0.97782 0.86202 0.84223 0.78641 0.77176 1.21717 1.21778 1.20723 1.22217 0.99694 1.00550 0.95362 1.21665 0.99799 0.86294 0.92852 0.88644 0.90067 0.88763 0.75313 0.90771 0.90745 0.91645 0.90155 0.90929 0.90337 0.92142 0.93312 0.78253 0.93462 0.90375 0.91841 0.91321 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.30 36.00 0.37 -0.75 16 2 C 0.51 5.62 7.90 -10.99 -0.09 5.53 16 3 O -0.55 -8.23 16.76 5.56 0.09 -8.13 16 4 N -0.71 -7.53 5.05 -54.93 -0.28 -7.81 16 5 C 0.12 1.40 2.12 -69.08 -0.15 1.25 16 6 H 0.11 1.43 6.05 -51.93 -0.31 1.11 16 7 C -0.16 -1.51 9.21 37.16 0.34 -1.17 16 8 C 0.51 6.87 6.92 -10.99 -0.08 6.80 16 9 O -0.55 -8.48 15.40 5.56 0.09 -8.39 16 10 N -0.60 -7.91 2.98 -173.03 -0.52 -8.42 16 11 C 0.10 1.26 5.65 -3.93 -0.02 1.24 16 12 C -0.15 -2.50 5.64 -26.83 -0.15 -2.66 16 13 C 0.18 3.32 2.73 -67.89 -0.19 3.13 16 14 N -0.72 -17.51 5.12 -53.39 -0.27 -17.78 16 15 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 19 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 24 C 0.12 1.58 6.42 -3.71 -0.02 1.55 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.41 3.85 7.76 -40.82 -0.32 3.53 16 29 H 0.07 0.64 7.15 -51.93 -0.37 0.27 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.88 5.06 -51.93 -0.26 0.62 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.38 10.02 7.80 -40.82 -0.32 9.71 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.22 7.04 -51.92 -0.37 0.86 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -33.01 341.75 -6.97 -39.98 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.56 Total: 10.04 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -0.37 Total: 5.48 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.34 Total: -61.11 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.18 Total: -16.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.01 -6.97 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199195418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.558 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds