Wall clock time and date at job start Tue Mar 31 2020 02:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00190 * 2 1 4 4 N 1.34776 * 119.99974 * 180.27631 * 2 1 3 5 5 C 1.46505 * 120.00191 * 179.72391 * 4 2 1 6 6 H 1.08998 * 109.47205 * 325.00249 * 5 4 2 7 7 C 1.53003 * 109.46903 * 85.00020 * 5 4 2 8 8 C 1.50695 * 109.47010 * 204.99813 * 5 4 2 9 9 O 1.21274 * 120.00499 * 337.26734 * 8 5 4 10 10 N 1.34779 * 119.99526 * 157.26767 * 8 5 4 11 11 C 1.46927 * 120.63290 * 4.79284 * 10 8 5 12 12 C 1.52758 * 109.00943 * 233.58455 * 11 10 8 13 13 C 1.53041 * 109.38543 * 305.58845 * 12 11 10 14 14 N 1.46497 * 109.44524 * 181.25493 * 13 12 11 15 15 C 1.36936 * 120.00374 * 84.94380 * 14 13 12 16 16 H 1.08000 * 119.99906 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00382 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46815 * 90.00286 * 19 17 15 21 21 H 1.48505 * 109.47115 * 210.00249 * 19 17 15 22 22 H 1.48497 * 109.47255 * 330.00776 * 19 17 15 23 23 C 1.53038 * 109.53669 * 61.24030 * 13 12 11 24 24 C 1.46925 * 120.63037 * 185.07671 * 10 8 5 25 25 H 1.09003 * 109.46857 * 89.99450 * 1 2 3 26 26 H 1.08992 * 109.47479 * 209.99912 * 1 2 3 27 27 H 1.09001 * 109.47317 * 330.00128 * 1 2 3 28 28 H 0.96994 * 119.99743 * 359.72417 * 4 2 1 29 29 H 1.08996 * 109.47431 * 176.07413 * 7 5 4 30 30 H 1.09003 * 109.47340 * 296.07459 * 7 5 4 31 31 H 1.09002 * 109.46913 * 56.06965 * 7 5 4 32 32 H 1.09003 * 109.58635 * 353.42326 * 11 10 8 33 33 H 1.09005 * 109.58382 * 113.84669 * 11 10 8 34 34 H 1.09006 * 109.56030 * 185.55426 * 12 11 10 35 35 H 1.08999 * 109.35948 * 65.50056 * 12 11 10 36 36 H 1.09002 * 109.45899 * 301.22168 * 13 12 11 37 37 H 0.97000 * 119.99756 * 264.93639 * 14 13 12 38 38 H 0.97004 * 120.00092 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.49672 * 178.68289 * 23 13 12 40 40 H 1.09007 * 109.49733 * 58.58731 * 23 13 12 41 41 H 1.09002 * 109.58970 * 246.15831 * 24 10 8 42 42 H 1.09007 * 109.58541 * 6.43941 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0056 5 6 3.6458 -1.1672 -0.0117 6 1 4.0067 -0.3240 -0.6006 7 6 4.1618 -1.0450 1.4235 8 6 4.1456 -2.4535 -0.6173 9 8 3.4344 -3.4357 -0.6270 10 7 5.3830 -2.5121 -1.1483 11 6 6.2945 -1.3639 -1.0513 12 6 6.7910 -1.0032 -2.4501 13 6 7.4070 -2.2414 -3.1055 14 7 7.9106 -1.8898 -4.4354 15 6 9.1630 -1.3536 -4.5737 16 1 9.7794 -1.1895 -3.7021 17 6 9.6404 -1.0209 -5.8339 18 7 8.8891 -1.2204 -6.8960 19 14 11.3486 -0.2887 -6.0223 20 1 12.3374 -1.3809 -6.2087 21 1 11.3745 0.6096 -7.2046 22 1 11.6919 0.4870 -4.8035 23 6 6.3435 -3.3342 -3.2354 24 6 5.8439 -3.7234 -1.8405 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6958 -2.0072 -0.0056 29 1 5.2495 -1.1150 1.4258 30 1 3.8588 -0.0834 1.8379 31 1 3.7445 -1.8494 2.0293 32 1 5.7657 -0.5128 -0.6220 33 1 7.1446 -1.6244 -0.4207 34 1 7.5429 -0.2171 -2.3791 35 1 5.9527 -0.6522 -3.0518 36 1 8.2296 -2.6065 -2.4905 37 1 7.3570 -2.0369 -5.2182 38 1 9.2226 -0.9875 -7.7767 39 1 6.7768 -4.2073 -3.7234 40 1 5.5093 -2.9612 -3.8297 41 1 6.6565 -4.1803 -1.2756 42 1 5.0185 -4.4298 -1.9297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199195418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:33 Heat of formation + Delta-G solvation = -89.702886 kcal Electronic energy + Delta-G solvation = -22888.013196 eV Core-core repulsion = 19481.030267 eV Total energy + Delta-G solvation = -3406.982930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75161 -40.40006 -38.83380 -36.21406 -36.12621 -33.95113 -32.80812 -31.82101 -30.98977 -29.70500 -26.92879 -25.51692 -24.39480 -23.76789 -21.89982 -21.36743 -20.32573 -19.11164 -18.67947 -17.86508 -17.30046 -16.70588 -16.66093 -16.18417 -16.03545 -15.49366 -15.41304 -15.07524 -14.81596 -14.74553 -14.54742 -14.00382 -13.63333 -13.40391 -13.31238 -13.23856 -13.17228 -12.98816 -12.84203 -12.67404 -12.63652 -12.20692 -12.16853 -12.01052 -11.71663 -11.33068 -11.08180 -11.00277 -10.80869 -10.28122 -9.76322 -9.01341 -7.93430 -5.22233 1.32171 1.48579 1.49659 1.57919 1.59510 1.74449 2.32738 2.56902 3.22992 3.40194 3.78359 3.78802 3.91678 3.99100 4.02721 4.08880 4.14315 4.33060 4.38547 4.50181 4.56882 4.63513 4.65969 4.71034 4.77239 4.81674 4.83072 4.98285 5.03661 5.07798 5.12511 5.25269 5.31792 5.45874 5.53257 5.58532 6.25850 6.28723 6.47317 6.92454 7.16866 7.34355 8.10171 8.32570 9.30288 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.003567 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.546106 B = 7847.052978 C = 8243.246243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.593 6.593 4 N -0.711 5.711 5 C 0.121 3.879 6 H 0.101 0.899 7 C -0.151 4.151 8 C 0.516 3.484 9 O -0.569 6.569 10 N -0.599 5.599 11 C 0.110 3.890 12 C -0.144 4.144 13 C 0.173 3.827 14 N -0.739 5.739 15 C -0.235 4.235 16 H 0.081 0.919 17 C -0.079 4.079 18 N -0.972 5.972 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.300 1.300 22 H -0.267 1.267 23 C -0.128 4.128 24 C 0.124 3.876 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.417 0.583 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.370 0.630 38 H 0.249 0.751 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.834 -2.133 18.620 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.474 6.474 4 N -0.366 5.366 5 C 0.013 3.987 6 H 0.119 0.881 7 C -0.209 4.209 8 C 0.304 3.696 9 O -0.448 6.448 10 N -0.331 5.331 11 C -0.012 4.012 12 C -0.184 4.184 13 C 0.065 3.935 14 N -0.378 5.378 15 C -0.367 4.367 16 H 0.098 0.902 17 C -0.271 4.271 18 N -0.624 5.624 19 Si 0.800 3.200 20 H -0.215 1.215 21 H -0.227 1.227 22 H -0.191 1.191 23 C -0.167 4.167 24 C 0.001 3.999 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.255 0.745 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.201 0.799 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.585 -1.861 18.665 23.160 hybrid contribution 0.657 0.102 -1.234 1.402 sum -12.928 -1.759 17.431 21.773 Atomic orbital electron populations 1.21904 0.87710 1.06504 1.06182 1.21647 0.92418 0.82343 0.73875 1.90715 1.71982 1.32837 1.51820 1.45978 1.05526 1.10130 1.74955 1.20824 0.82778 0.95561 0.99586 0.88123 1.22074 1.02716 1.03515 0.92601 1.20739 0.81210 0.89916 0.77729 1.90644 1.56568 1.38029 1.59601 1.48164 1.13866 1.16545 1.54545 1.21930 0.93953 0.88123 0.97239 1.22407 1.00105 1.00180 0.95757 1.20432 0.94129 0.92544 0.86440 1.42675 1.16005 1.75331 1.03781 1.19645 0.92586 1.31703 0.92739 0.90151 1.25556 1.02162 1.03811 0.95530 1.69825 1.38544 1.56042 0.97942 0.85175 0.80006 0.77715 0.77094 1.21536 1.22704 1.19131 1.22070 0.98261 0.99417 0.96997 1.21585 1.00393 0.86461 0.91439 0.87536 0.87407 0.88246 0.74502 0.89451 0.91031 0.91012 0.88267 0.88470 0.91434 0.94067 0.92773 0.79910 0.94206 0.90631 0.93380 0.89216 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.30 71.23 0.73 -1.06 16 2 C 0.51 10.51 7.90 87.65 0.69 11.20 16 3 O -0.59 -17.62 16.76 -3.03 -0.05 -17.67 16 4 N -0.71 -13.91 5.05 -446.10 -2.25 -16.16 16 5 C 0.12 2.60 2.12 44.24 0.09 2.69 16 6 H 0.10 2.44 6.05 -2.39 -0.01 2.43 16 7 C -0.15 -2.55 9.21 71.98 0.66 -1.88 16 8 C 0.52 12.83 6.92 87.66 0.61 13.44 16 9 O -0.57 -16.57 15.40 -3.01 -0.05 -16.61 16 10 N -0.60 -14.59 2.98 -819.73 -2.44 -17.03 16 11 C 0.11 2.49 5.65 86.22 0.49 2.98 16 12 C -0.14 -4.58 5.64 30.53 0.17 -4.41 16 13 C 0.17 6.29 2.73 45.02 0.12 6.41 16 14 N -0.74 -36.11 5.12 -322.82 -1.65 -37.76 16 15 C -0.23 -12.61 9.93 84.03 0.83 -11.77 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 18 N -0.97 -59.44 13.06 21.65 0.28 -59.15 16 19 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 C -0.13 -4.01 5.55 30.67 0.17 -3.84 16 24 C 0.12 3.11 6.42 86.36 0.55 3.67 16 25 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.42 7.05 7.76 -92.71 -0.72 6.33 16 29 H 0.09 1.23 7.15 -2.39 -0.02 1.22 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.94 5.06 -2.39 -0.01 1.93 16 33 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 37 H 0.37 19.88 7.80 -92.71 -0.72 19.16 16 38 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.09 2.29 7.04 -2.38 -0.02 2.27 16 Total: -1.00 -71.99 341.75 1.06 -70.93 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.41 Total: 32.49 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.60 Total: 13.44 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -6.06 Total: -130.11 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.10 Total: -34.28 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.99 1.06 -70.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199195418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.770 kcal (2) G-P(sol) polarization free energy of solvation -71.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds