Wall clock time and date at job start Tue Mar 31 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99896 * 2 1 4 4 C 1.34777 * 120.00271 * 179.97438 * 2 1 3 5 5 O 1.21278 * 119.99854 * 0.02562 * 4 2 1 6 6 C 1.50703 * 120.00161 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.47064 * 180.02562 * 6 4 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 4 10 10 C 1.46921 * 120.63059 * 359.72315 * 9 7 6 11 11 C 1.52760 * 109.00903 * 233.58159 * 10 9 7 12 12 C 1.53040 * 109.38219 * 305.58856 * 11 10 9 13 13 N 1.46497 * 109.44820 * 181.25223 * 12 11 10 14 14 C 1.36934 * 120.00028 * 84.94535 * 13 12 11 15 15 H 1.07999 * 119.99906 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00417 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00476 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99719 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47258 * 89.99766 * 18 16 14 20 20 H 1.48502 * 109.47106 * 210.00053 * 18 16 14 21 21 H 1.48504 * 109.47132 * 329.99706 * 18 16 14 22 22 C 1.53042 * 109.53627 * 61.23932 * 12 11 10 23 23 C 1.46926 * 120.62707 * 180.02562 * 9 7 6 24 24 H 1.08998 * 109.47073 * 270.00063 * 1 2 3 25 25 H 1.09000 * 109.47082 * 30.00019 * 1 2 3 26 26 H 1.09004 * 109.46754 * 150.00286 * 1 2 3 27 27 H 1.09002 * 109.47086 * 239.99443 * 3 2 1 28 28 H 1.08992 * 109.47260 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47265 * 119.99800 * 3 2 1 30 30 H 1.09002 * 109.47152 * 60.00245 * 6 4 2 31 31 H 1.09001 * 109.46980 * 300.00345 * 6 4 2 32 32 H 1.08996 * 109.58649 * 353.41979 * 10 9 7 33 33 H 1.09004 * 109.58204 * 113.84425 * 10 9 7 34 34 H 1.09000 * 109.56394 * 185.56047 * 11 10 9 35 35 H 1.08995 * 109.36180 * 65.49907 * 11 10 9 36 36 H 1.09001 * 109.46468 * 301.22386 * 12 11 10 37 37 H 0.96999 * 120.00269 * 264.93818 * 13 12 11 38 38 H 0.96996 * 120.00108 * 179.97438 * 17 16 14 39 39 H 1.09008 * 109.49904 * 178.67973 * 22 12 11 40 40 H 1.09000 * 109.52420 * 58.60476 * 22 12 11 41 41 H 1.09005 * 109.58410 * 246.15856 * 23 9 7 42 42 H 1.09001 * 109.58875 * 6.43498 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1671 0.0011 7 6 4.1483 -2.5880 0.0010 8 8 3.3601 -3.5098 0.0000 9 7 5.4734 -2.8342 0.0009 10 6 6.4403 -1.7280 -0.0051 11 6 7.4123 -1.9231 -1.1674 12 6 8.0467 -3.3125 -1.0711 13 7 9.0014 -3.4898 -2.1680 14 6 10.2868 -3.0364 -2.0370 15 1 10.5967 -2.5476 -1.1252 16 6 11.1916 -3.2049 -3.0762 17 7 12.4270 -2.7685 -2.9505 18 14 10.6559 -4.0509 -4.6531 19 1 10.1313 -3.0385 -5.6045 20 1 11.8185 -4.7463 -5.2614 21 1 9.5918 -5.0406 -4.3470 22 6 6.9555 -4.3812 -1.1671 23 6 5.9783 -4.2140 0.0002 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 2.8242 1.3265 -0.8900 28 1 1.4892 2.0972 -0.0005 29 1 2.8241 1.3266 0.8900 30 1 4.0089 -0.6531 0.8911 31 1 4.0096 -0.6534 -0.8888 32 1 5.9126 -0.7821 -0.1268 33 1 6.9942 -1.7218 0.9337 34 1 8.1924 -1.1632 -1.1223 35 1 6.8714 -1.8347 -2.1095 36 1 8.5666 -3.4091 -0.1179 37 1 8.7230 -3.9286 -2.9871 38 1 13.0593 -2.8866 -3.6765 39 1 7.4104 -5.3708 -1.1220 40 1 6.4188 -4.2702 -2.1093 41 1 6.4937 -4.4149 0.9395 42 1 5.1456 -4.9078 -0.1153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202832911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:41 Heat of formation + Delta-G solvation = -45.003638 kcal Electronic energy + Delta-G solvation = -22754.053518 eV Core-core repulsion = 19349.008893 eV Total energy + Delta-G solvation = -3405.044625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60249 -39.31274 -37.33741 -35.65810 -34.58070 -32.35400 -31.53069 -30.44436 -29.68621 -28.08052 -26.17193 -24.84273 -23.03860 -22.34768 -20.69177 -19.73149 -18.69226 -17.83791 -17.43204 -16.49553 -16.38399 -16.08112 -15.33922 -15.14024 -14.84005 -14.09707 -13.89786 -13.75952 -13.49510 -13.34608 -13.10441 -13.07207 -12.97297 -12.80153 -12.48629 -12.30028 -12.11342 -12.00352 -11.89634 -11.07918 -11.02349 -10.91604 -10.58276 -10.27045 -10.06984 -9.90018 -9.62647 -9.39033 -8.96430 -8.95799 -8.49912 -7.32160 -5.81422 -3.17226 2.45199 2.55847 2.74079 3.18275 3.35145 3.38961 3.43419 4.18905 4.43950 4.55727 4.67700 4.84717 4.90714 4.94963 5.02392 5.08218 5.10458 5.24300 5.28118 5.29255 5.33683 5.45902 5.51895 5.56484 5.63357 5.84770 5.92951 6.08821 6.14589 6.15922 6.27535 6.36631 6.53656 6.78413 6.91154 7.02111 7.48664 7.94188 8.00225 8.31700 8.37829 9.16111 9.89073 10.08901 11.36780 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.003414 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.434845 B = 8199.054097 C = 8497.522354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.631 5.631 3 C 0.078 3.922 4 C 0.512 3.488 5 O -0.492 6.492 6 C -0.162 4.162 7 C 0.514 3.486 8 O -0.506 6.506 9 N -0.611 5.611 10 C 0.107 3.893 11 C -0.152 4.152 12 C 0.184 3.816 13 N -0.749 5.749 14 C -0.244 4.244 15 H 0.091 0.909 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.143 4.143 23 C 0.119 3.881 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.128 9.294 7.541 23.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.368 5.368 3 C -0.065 4.065 4 C 0.298 3.702 5 O -0.363 6.363 6 C -0.205 4.205 7 C 0.299 3.701 8 O -0.379 6.379 9 N -0.346 5.346 10 C -0.016 4.016 11 C -0.193 4.193 12 C 0.074 3.926 13 N -0.391 5.391 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.191 4.191 17 N -0.581 5.581 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.182 4.182 23 C -0.004 4.004 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.661 8.279 7.623 23.528 hybrid contribution 0.008 -0.149 -1.288 1.297 sum -20.653 8.130 6.335 23.082 Atomic orbital electron populations 1.21629 0.79097 1.03075 1.01732 1.47794 1.07084 1.06271 1.75629 1.21824 0.97452 0.85296 1.01972 1.20096 0.89384 0.83443 0.77248 1.90854 1.69365 1.30093 1.46010 1.21652 0.94350 0.98105 1.06383 1.19891 0.82166 0.90443 0.77562 1.90825 1.54061 1.45397 1.47631 1.48174 1.05025 1.07874 1.73533 1.21767 0.91003 0.88630 1.00204 1.22565 0.98103 1.01865 0.96812 1.20135 0.88767 0.90957 0.92744 1.42807 1.09368 1.71441 1.15438 1.19061 0.85131 1.31341 1.01883 0.89165 1.24671 0.95563 1.00822 0.98027 1.69695 1.03727 1.51671 1.33032 0.86561 0.77545 0.79719 0.84762 1.21139 1.21751 1.20295 1.22241 0.96968 1.00761 0.98200 1.21550 0.97740 0.82512 0.98590 0.92896 0.91318 0.90543 0.91858 0.90364 0.91916 0.86232 0.86119 0.90597 0.91201 0.90079 0.92326 0.92504 0.80639 0.93033 0.90508 0.91986 0.91442 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.41 59.84 0.62 1.28 16 2 N -0.63 -5.51 3.27 -189.51 -0.62 -6.13 16 3 C 0.08 0.36 9.74 59.85 0.58 0.94 16 4 C 0.51 6.35 7.67 -10.98 -0.08 6.26 16 5 O -0.49 -8.63 13.76 -18.96 -0.26 -8.89 16 6 C -0.16 -1.61 3.35 -29.03 -0.10 -1.71 16 7 C 0.51 7.38 7.69 -10.98 -0.08 7.30 16 8 O -0.51 -9.60 13.59 -18.96 -0.26 -9.86 16 9 N -0.61 -8.08 2.98 -173.06 -0.52 -8.60 16 10 C 0.11 1.21 6.31 -3.94 -0.02 1.19 16 11 C -0.15 -2.30 5.64 -26.83 -0.15 -2.45 16 12 C 0.18 3.27 2.73 -67.89 -0.19 3.08 16 13 N -0.75 -16.96 4.92 -53.39 -0.26 -17.22 16 14 C -0.24 -6.61 10.41 -15.06 -0.16 -6.77 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 16 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 17 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 18 Si 0.88 21.81 27.73 -169.99 -4.71 17.10 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 22 C -0.14 -2.21 5.55 -26.63 -0.15 -2.36 16 23 C 0.12 1.66 6.43 -3.73 -0.02 1.63 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 26 H 0.08 0.73 7.42 -51.93 -0.39 0.34 16 27 H 0.06 0.25 7.85 -51.93 -0.41 -0.16 16 28 H 0.08 0.23 7.79 -51.93 -0.40 -0.18 16 29 H 0.06 0.22 7.85 -51.93 -0.41 -0.19 16 30 H 0.12 0.81 7.68 -51.93 -0.40 0.41 16 31 H 0.12 0.92 7.40 -51.93 -0.38 0.53 16 32 H 0.08 0.62 5.93 -51.93 -0.31 0.32 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.33 7.00 -51.93 -0.36 0.96 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -36.87 336.36 -7.31 -44.18 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.67 Total: 3.84 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 0.15 Total: 8.45 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.62 Total: -59.89 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.52 Total: -18.75 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.87 -7.31 -44.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202832911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.823 kcal (2) G-P(sol) polarization free energy of solvation -36.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds