Wall clock time and date at job start Tue Mar 31 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99896 * 2 1 4 4 C 1.34777 * 120.00271 * 179.97438 * 2 1 3 5 5 O 1.21278 * 119.99854 * 0.02562 * 4 2 1 6 6 C 1.50703 * 120.00161 * 180.02562 * 4 2 1 7 7 C 1.50701 * 109.47064 * 180.02562 * 6 4 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 4 10 10 C 1.46921 * 120.63059 * 359.72315 * 9 7 6 11 11 C 1.52760 * 109.00903 * 233.58159 * 10 9 7 12 12 C 1.53040 * 109.38219 * 305.58856 * 11 10 9 13 13 N 1.46497 * 109.44820 * 181.25223 * 12 11 10 14 14 C 1.36934 * 120.00028 * 84.94535 * 13 12 11 15 15 H 1.07999 * 119.99906 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00417 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00476 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99719 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47258 * 89.99766 * 18 16 14 20 20 H 1.48502 * 109.47106 * 210.00053 * 18 16 14 21 21 H 1.48504 * 109.47132 * 329.99706 * 18 16 14 22 22 C 1.53042 * 109.53627 * 61.23932 * 12 11 10 23 23 C 1.46926 * 120.62707 * 180.02562 * 9 7 6 24 24 H 1.08998 * 109.47073 * 270.00063 * 1 2 3 25 25 H 1.09000 * 109.47082 * 30.00019 * 1 2 3 26 26 H 1.09004 * 109.46754 * 150.00286 * 1 2 3 27 27 H 1.09002 * 109.47086 * 239.99443 * 3 2 1 28 28 H 1.08992 * 109.47260 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47265 * 119.99800 * 3 2 1 30 30 H 1.09002 * 109.47152 * 60.00245 * 6 4 2 31 31 H 1.09001 * 109.46980 * 300.00345 * 6 4 2 32 32 H 1.08996 * 109.58649 * 353.41979 * 10 9 7 33 33 H 1.09004 * 109.58204 * 113.84425 * 10 9 7 34 34 H 1.09000 * 109.56394 * 185.56047 * 11 10 9 35 35 H 1.08995 * 109.36180 * 65.49907 * 11 10 9 36 36 H 1.09001 * 109.46468 * 301.22386 * 12 11 10 37 37 H 0.96999 * 120.00269 * 264.93818 * 13 12 11 38 38 H 0.96996 * 120.00108 * 179.97438 * 17 16 14 39 39 H 1.09008 * 109.49904 * 178.67973 * 22 12 11 40 40 H 1.09000 * 109.52420 * 58.60476 * 22 12 11 41 41 H 1.09005 * 109.58410 * 246.15856 * 23 9 7 42 42 H 1.09001 * 109.58875 * 6.43498 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1671 0.0011 7 6 4.1483 -2.5880 0.0010 8 8 3.3601 -3.5098 0.0000 9 7 5.4734 -2.8342 0.0009 10 6 6.4403 -1.7280 -0.0051 11 6 7.4123 -1.9231 -1.1674 12 6 8.0467 -3.3125 -1.0711 13 7 9.0014 -3.4898 -2.1680 14 6 10.2868 -3.0364 -2.0370 15 1 10.5967 -2.5476 -1.1252 16 6 11.1916 -3.2049 -3.0762 17 7 12.4270 -2.7685 -2.9505 18 14 10.6559 -4.0509 -4.6531 19 1 10.1313 -3.0385 -5.6045 20 1 11.8185 -4.7463 -5.2614 21 1 9.5918 -5.0406 -4.3470 22 6 6.9555 -4.3812 -1.1671 23 6 5.9783 -4.2140 0.0002 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 2.8242 1.3265 -0.8900 28 1 1.4892 2.0972 -0.0005 29 1 2.8241 1.3266 0.8900 30 1 4.0089 -0.6531 0.8911 31 1 4.0096 -0.6534 -0.8888 32 1 5.9126 -0.7821 -0.1268 33 1 6.9942 -1.7218 0.9337 34 1 8.1924 -1.1632 -1.1223 35 1 6.8714 -1.8347 -2.1095 36 1 8.5666 -3.4091 -0.1179 37 1 8.7230 -3.9286 -2.9871 38 1 13.0593 -2.8866 -3.6765 39 1 7.4104 -5.3708 -1.1220 40 1 6.4188 -4.2702 -2.1093 41 1 6.4937 -4.4149 0.9395 42 1 5.1456 -4.9078 -0.1153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202832911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:41 Heat of formation + Delta-G solvation = -71.389129 kcal Electronic energy + Delta-G solvation = -22755.197679 eV Core-core repulsion = 19349.008893 eV Total energy + Delta-G solvation = -3406.188786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58828 -40.29967 -38.61125 -36.51131 -36.11481 -33.99002 -32.81655 -31.58746 -31.11728 -28.61816 -26.97169 -26.23615 -24.24312 -23.91762 -21.95768 -20.81561 -19.82582 -19.30949 -18.65582 -17.30763 -17.20207 -17.09175 -16.64997 -16.25913 -16.07218 -15.81874 -15.01659 -14.98399 -14.73059 -14.43774 -14.26368 -14.11441 -13.90411 -13.51150 -13.46545 -13.39202 -13.21197 -12.92921 -12.87936 -12.78563 -12.60905 -12.15429 -12.05627 -12.00018 -11.76994 -11.30923 -11.10148 -10.86081 -10.47272 -9.62930 -9.61613 -9.28383 -8.00014 -5.32387 1.39562 1.40570 1.48083 1.59572 1.70660 1.77816 2.32326 2.49796 3.31590 3.38222 3.54604 3.64071 3.93943 4.08270 4.20082 4.26519 4.28835 4.34866 4.42258 4.43915 4.47969 4.54768 4.65603 4.78238 4.85214 4.85573 4.87377 4.92941 5.03227 5.04905 5.09082 5.30381 5.52158 5.57270 5.66189 5.80972 6.24535 6.32659 6.47396 7.10380 7.15768 7.32458 7.87641 8.05311 9.21362 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.003414 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.434845 B = 8199.054097 C = 8497.522354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.625 5.625 3 C 0.067 3.933 4 C 0.501 3.499 5 O -0.559 6.559 6 C -0.153 4.153 7 C 0.507 3.493 8 O -0.559 6.559 9 N -0.609 5.609 10 C 0.113 3.887 11 C -0.144 4.144 12 C 0.175 3.825 13 N -0.754 5.754 14 C -0.221 4.221 15 H 0.064 0.936 16 C -0.064 4.064 17 N -0.984 5.984 18 Si 0.949 3.051 19 H -0.280 1.280 20 H -0.300 1.300 21 H -0.257 1.257 22 C -0.131 4.131 23 C 0.122 3.878 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.362 0.638 38 H 0.256 0.744 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.499 11.338 7.796 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.360 5.360 3 C -0.074 4.074 4 C 0.289 3.711 5 O -0.436 6.436 6 C -0.194 4.194 7 C 0.295 3.705 8 O -0.436 6.436 9 N -0.343 5.343 10 C -0.009 4.009 11 C -0.185 4.185 12 C 0.067 3.933 13 N -0.397 5.397 14 C -0.352 4.352 15 H 0.082 0.918 16 C -0.255 4.255 17 N -0.635 5.635 18 Si 0.777 3.223 19 H -0.206 1.206 20 H -0.227 1.227 21 H -0.182 1.182 22 C -0.170 4.170 23 C -0.001 4.001 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.178 0.822 31 H 0.171 0.829 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.194 0.806 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.073 10.395 7.908 25.648 hybrid contribution 0.395 -0.711 -1.264 1.503 sum -21.678 9.684 6.644 24.655 Atomic orbital electron populations 1.21732 0.78873 1.03269 1.02118 1.47946 1.07617 1.06825 1.73603 1.22180 0.98156 0.83604 1.03499 1.20607 0.90488 0.83491 0.76549 1.90834 1.70689 1.32628 1.49463 1.21716 0.92638 0.95416 1.09660 1.20670 0.81770 0.91877 0.76175 1.90817 1.55367 1.47491 1.49972 1.48258 1.05275 1.07874 1.72886 1.21886 0.90309 0.89690 0.99032 1.22368 0.98458 0.99061 0.98586 1.20419 0.88560 0.93533 0.90798 1.42877 1.08668 1.71340 1.16787 1.19040 0.86746 1.29048 1.00351 0.91781 1.25410 0.95689 1.02727 1.01672 1.69860 1.05174 1.54305 1.34133 0.85501 0.77200 0.78986 0.80608 1.20632 1.22668 1.18190 1.22097 0.96360 0.99859 0.98690 1.21435 0.96883 0.83372 0.98420 0.92462 0.88066 0.93346 0.90495 0.88383 0.90091 0.82170 0.82948 0.86209 0.89681 0.91282 0.92596 0.93170 0.80561 0.93494 0.90720 0.92585 0.89999 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.41 127.77 1.33 2.45 16 2 N -0.63 -9.24 3.27 -871.89 -2.85 -12.09 16 3 C 0.07 0.30 9.74 127.77 1.24 1.55 16 4 C 0.50 11.58 7.67 87.66 0.67 12.25 16 5 O -0.56 -20.03 13.76 20.42 0.28 -19.75 16 6 C -0.15 -2.45 3.35 29.10 0.10 -2.35 16 7 C 0.51 13.55 7.69 87.66 0.67 14.23 16 8 O -0.56 -21.37 13.59 20.41 0.28 -21.09 16 9 N -0.61 -14.49 2.98 -819.82 -2.44 -16.94 16 10 C 0.11 2.09 6.31 86.22 0.54 2.64 16 11 C -0.14 -3.97 5.64 30.53 0.17 -3.80 16 12 C 0.17 5.96 2.73 45.02 0.12 6.08 16 13 N -0.75 -33.40 4.92 -322.82 -1.59 -34.99 16 14 C -0.22 -11.97 10.41 84.03 0.87 -11.10 16 15 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 16 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 17 N -0.98 -61.74 13.97 21.65 0.30 -61.44 16 18 Si 0.95 45.06 27.73 68.60 1.90 46.96 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 21 H -0.26 -11.19 6.52 99.48 0.65 -10.54 16 22 C -0.13 -3.90 5.55 30.66 0.17 -3.73 16 23 C 0.12 3.24 6.43 86.35 0.56 3.79 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 0.68 7.92 -2.39 -0.02 0.66 16 26 H 0.05 0.94 7.42 -2.39 -0.02 0.92 16 27 H 0.08 0.19 7.85 -2.39 -0.02 0.17 16 28 H 0.10 0.10 7.79 -2.39 -0.02 0.08 16 29 H 0.08 0.13 7.85 -2.38 -0.02 0.11 16 30 H 0.16 1.25 7.68 -2.39 -0.02 1.23 16 31 H 0.15 1.49 7.40 -2.39 -0.02 1.47 16 32 H 0.12 1.23 5.93 -2.39 -0.01 1.22 16 33 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 37 H 0.36 15.85 5.66 -92.71 -0.52 15.33 16 38 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.08 2.28 7.00 -2.39 -0.02 2.26 16 Total: -1.00 -85.21 336.36 3.23 -81.98 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.43 Total: 18.53 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 6.92 Total: 18.83 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -6.58 Total: -125.46 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: 0.56 Total: -40.84 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -85.21 3.23 -81.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202832911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.591 kcal (2) G-P(sol) polarization free energy of solvation -85.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds