Wall clock time and date at job start Tue Mar 31 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21284 * 119.99709 * 2 1 4 4 N 1.34768 * 120.00047 * 179.97438 * 2 1 3 5 5 C 1.46495 * 120.00266 * 355.31384 * 4 2 1 6 6 C 1.46501 * 119.99971 * 175.31012 * 4 2 1 7 7 C 1.50702 * 109.47105 * 89.99792 * 6 4 2 8 8 O 1.21277 * 120.00032 * 0.02562 * 7 6 4 9 9 N 1.34781 * 119.99913 * 179.72184 * 7 6 4 10 10 C 1.46922 * 120.63143 * 0.28639 * 9 7 6 11 11 C 1.53200 * 108.77561 * 233.58286 * 10 9 7 12 12 C 1.53045 * 109.30858 * 305.36426 * 11 10 9 13 13 C 1.53035 * 109.53961 * 61.36230 * 12 11 10 14 14 H 1.09006 * 109.49884 * 58.61819 * 13 12 11 15 15 N 1.46496 * 109.50074 * 178.68218 * 13 12 11 16 16 C 1.36938 * 120.00513 * 205.00273 * 15 13 12 17 17 H 1.07999 * 119.99624 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99976 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99607 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00070 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.46766 * 90.00641 * 20 18 16 22 22 H 1.48502 * 109.46806 * 210.00220 * 20 18 16 23 23 H 1.48494 * 109.47148 * 330.00376 * 20 18 16 24 24 C 1.46923 * 120.62910 * 179.97438 * 9 7 6 25 25 H 1.09004 * 109.46896 * 185.21395 * 1 2 3 26 26 H 1.09003 * 109.47067 * 305.20882 * 1 2 3 27 27 H 1.08993 * 109.47093 * 65.21177 * 1 2 3 28 28 H 1.08999 * 109.47303 * 275.45919 * 5 4 2 29 29 H 1.08995 * 109.47111 * 35.45917 * 5 4 2 30 30 H 1.09002 * 109.47251 * 155.46137 * 5 4 2 31 31 H 1.09010 * 109.47096 * 330.00216 * 6 4 2 32 32 H 1.08998 * 109.47423 * 210.00563 * 6 4 2 33 33 H 1.09005 * 109.58996 * 353.36604 * 10 9 7 34 34 H 1.08997 * 109.59292 * 113.78943 * 10 9 7 35 35 H 1.09001 * 109.49283 * 65.30983 * 11 10 9 36 36 H 1.08992 * 109.49935 * 185.37937 * 11 10 9 37 37 H 1.08998 * 109.45718 * 181.38673 * 12 11 10 38 38 H 1.09004 * 109.45300 * 301.35813 * 12 11 10 39 39 H 0.97005 * 119.99616 * 25.00261 * 15 13 12 40 40 H 0.96999 * 119.99783 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.58961 * 246.20725 * 24 9 7 42 42 H 1.09003 * 109.58728 * 6.63511 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4522 -2.4337 0.1047 6 6 3.6423 -1.1693 -0.1032 7 6 4.2439 -1.1112 1.2773 8 8 3.5231 -1.0724 2.2518 9 7 5.5832 -1.1087 1.4291 10 6 6.4694 -1.1557 0.2582 11 6 7.4508 -2.3196 0.4291 12 6 8.1821 -2.1729 1.7655 13 6 7.1691 -2.2229 2.9115 14 1 6.6247 -3.1666 2.8749 15 7 7.8731 -2.1140 4.1916 16 6 7.3094 -2.6275 5.3290 17 1 6.3456 -3.1125 5.2824 18 6 7.9763 -2.5237 6.5420 19 7 7.4347 -3.0178 7.6351 20 14 9.6432 -1.6842 6.6226 21 1 9.4551 -0.2348 6.8854 22 1 10.4477 -2.2853 7.7166 23 1 10.3516 -1.8652 5.3302 24 6 6.1845 -1.0518 2.7684 25 1 -0.3633 -1.0235 0.0934 26 1 -0.3633 0.5925 0.8397 27 1 -0.3633 0.4308 -0.9329 28 1 1.2593 -2.6566 1.1541 29 1 0.5056 -2.3532 -0.4296 30 1 2.0495 -3.2336 -0.3328 31 1 3.9670 -0.3017 -0.6778 32 1 3.9696 -2.0802 -0.6043 33 1 5.8760 -1.3076 -0.6434 34 1 7.0225 -0.2197 0.1806 35 1 6.9033 -3.2621 0.4156 36 1 8.1747 -2.3077 -0.3856 37 1 8.8988 -2.9864 1.8784 38 1 8.7090 -1.2189 1.7882 39 1 8.7387 -1.6780 4.2335 40 1 7.9009 -2.9456 8.4826 41 1 6.7150 -0.1075 2.8911 42 1 5.4030 -1.1352 3.5237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207429435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:38 Heat of formation + Delta-G solvation = -44.674169 kcal Electronic energy + Delta-G solvation = -23071.330971 eV Core-core repulsion = 19666.300633 eV Total energy + Delta-G solvation = -3405.030338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45162 -39.31284 -37.32158 -35.51623 -34.62427 -32.36985 -31.37534 -30.92759 -29.07664 -27.94637 -26.39279 -24.73227 -23.74223 -21.75574 -20.68434 -19.65886 -18.69717 -17.57280 -17.35423 -17.14626 -16.46481 -15.62784 -15.15281 -15.00435 -14.60054 -14.29165 -14.07495 -13.72536 -13.51023 -13.31893 -13.12777 -13.00615 -12.93271 -12.58747 -12.49595 -12.31680 -12.17181 -11.77481 -11.64293 -11.23630 -10.93708 -10.74778 -10.64854 -10.28816 -10.00323 -9.92732 -9.88104 -9.59086 -9.12494 -8.76369 -8.37193 -7.29319 -5.77421 -3.14758 2.42507 2.73734 2.81402 3.30025 3.36962 3.39777 3.45157 4.42018 4.55699 4.57959 4.75715 4.80654 4.87557 4.96053 5.02307 5.13895 5.16623 5.20117 5.27068 5.36818 5.43854 5.48955 5.54210 5.65766 5.68856 5.79130 5.89897 6.00365 6.06103 6.12173 6.23398 6.39030 6.66674 6.72954 6.90992 7.14543 7.62902 7.98338 8.00730 8.38950 8.42422 9.18510 9.90251 10.08738 11.40674 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.004045 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.332589 B = 6919.740959 C = 7531.543193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.517 3.483 3 O -0.544 6.544 4 N -0.602 5.602 5 C 0.078 3.922 6 C 0.098 3.902 7 C 0.495 3.505 8 O -0.529 6.529 9 N -0.608 5.608 10 C 0.107 3.893 11 C -0.129 4.129 12 C -0.130 4.130 13 C 0.174 3.826 14 H 0.059 0.941 15 N -0.743 5.743 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.931 5.931 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.093 3.907 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 1.131 -22.818 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.306 3.694 3 O -0.421 6.421 4 N -0.336 5.336 5 C -0.065 4.065 6 C -0.029 4.029 7 C 0.280 3.720 8 O -0.405 6.405 9 N -0.343 5.343 10 C -0.017 4.017 11 C -0.168 4.168 12 C -0.168 4.168 13 C 0.064 3.936 14 H 0.077 0.923 15 N -0.385 5.385 16 C -0.378 4.378 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.578 5.578 20 Si 0.714 3.286 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.031 4.031 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.619 1.574 -22.084 23.759 hybrid contribution 1.333 0.511 0.312 1.461 sum -7.287 2.085 -21.773 23.054 Atomic orbital electron populations 1.21963 0.91502 1.04761 1.05142 1.20812 0.90748 0.82886 0.74933 1.90719 1.70679 1.31151 1.49532 1.47494 1.05514 1.07182 1.73383 1.21919 0.97039 0.84767 1.02793 1.21387 0.81101 1.04913 0.95500 1.21054 0.82311 0.76796 0.91809 1.90710 1.59820 1.49053 1.40923 1.48260 1.04972 1.72867 1.08203 1.21743 0.92827 0.99292 0.87815 1.21876 0.98264 0.98467 0.98174 1.21865 0.98679 1.02163 0.94114 1.20548 0.91690 0.96136 0.85271 0.92304 1.42729 1.21093 1.70435 1.04235 1.19095 1.03459 1.30624 0.84622 0.89114 1.24680 0.98240 1.00584 0.95363 1.69705 1.38946 1.50543 0.98640 0.86555 0.85254 0.79705 0.77037 1.21018 1.21688 1.20294 1.22768 0.98107 1.00020 0.82225 0.89935 0.88630 0.88847 0.91726 0.90562 0.90796 0.87293 0.87654 0.90422 0.91282 0.91402 0.90862 0.91326 0.92124 0.80471 0.92997 0.92265 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.01 36.01 0.36 -1.05 16 2 C 0.52 6.68 7.77 -10.99 -0.09 6.59 16 3 O -0.54 -9.42 16.73 5.55 0.09 -9.33 16 4 N -0.60 -6.85 2.36 -182.95 -0.43 -7.28 16 5 C 0.08 0.60 10.01 59.84 0.60 1.19 16 6 C 0.10 1.11 4.24 -5.19 -0.02 1.09 16 7 C 0.49 8.02 7.77 -10.98 -0.09 7.94 16 8 O -0.53 -11.10 15.84 5.56 0.09 -11.01 16 9 N -0.61 -9.27 2.97 -172.47 -0.51 -9.78 16 10 C 0.11 1.13 6.34 -3.71 -0.02 1.11 16 11 C -0.13 -1.37 6.08 -26.60 -0.16 -1.53 16 12 C -0.13 -1.88 5.35 -26.69 -0.14 -2.02 16 13 C 0.17 3.33 2.94 -67.57 -0.20 3.13 16 14 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 15 N -0.74 -17.53 4.93 -53.07 -0.26 -17.79 16 16 C -0.25 -7.09 10.42 -15.06 -0.16 -7.24 16 17 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 18 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 19 N -0.93 -29.62 13.97 55.49 0.78 -28.85 16 20 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 21 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 24 C 0.09 1.77 6.05 -3.47 -0.02 1.75 16 25 H 0.08 0.47 5.49 -51.93 -0.29 0.18 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.36 6.14 -51.93 -0.32 0.04 16 30 H 0.07 0.44 7.83 -51.93 -0.41 0.03 16 31 H 0.11 1.20 7.30 -51.92 -0.38 0.83 16 32 H 0.11 0.81 7.40 -51.93 -0.38 0.42 16 33 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.36 8.32 5.66 -40.82 -0.23 8.08 16 40 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.09 2.15 7.00 -51.93 -0.36 1.79 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -38.24 338.21 -6.39 -44.63 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.49 Total: 5.80 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -0.03 Total: 11.08 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.43 Total: -63.71 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.18 Total: -20.35 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.24 -6.39 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207429435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.046 kcal (2) G-P(sol) polarization free energy of solvation -38.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds