Wall clock time and date at job start Tue Mar 31 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46861 * 2 1 4 4 C 1.34772 * 119.99944 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00200 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00071 * 179.97438 * 4 3 2 7 7 C 1.50701 * 109.47139 * 179.97438 * 6 4 3 8 8 O 1.21284 * 119.99890 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99951 * 180.02562 * 7 6 4 10 10 C 1.46931 * 120.63145 * 359.97321 * 9 7 6 11 11 C 1.53191 * 108.76527 * 126.40558 * 10 9 7 12 12 C 1.53046 * 109.30997 * 54.65907 * 11 10 9 13 13 C 1.53039 * 109.52798 * 298.61471 * 12 11 10 14 14 H 1.09000 * 109.49863 * 301.42271 * 13 12 11 15 15 N 1.46495 * 109.49863 * 181.35646 * 13 12 11 16 16 C 1.36943 * 119.99932 * 154.99770 * 15 13 12 17 17 H 1.08002 * 119.99772 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99697 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99762 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46926 * 90.00654 * 20 18 16 22 22 H 1.48501 * 109.47385 * 210.00286 * 20 18 16 23 23 H 1.48501 * 109.47294 * 330.00562 * 20 18 16 24 24 C 1.46919 * 120.63242 * 180.02562 * 9 7 6 25 25 H 1.09004 * 109.46712 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47210 * 299.99903 * 1 2 3 27 27 H 1.08994 * 109.46947 * 59.99992 * 1 2 3 28 28 H 1.09000 * 109.47210 * 240.00097 * 2 1 3 29 29 H 1.08999 * 109.47042 * 119.99523 * 2 1 3 30 30 H 0.97001 * 119.99697 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46882 * 59.99853 * 6 4 3 32 32 H 1.08997 * 109.46741 * 300.00211 * 6 4 3 33 33 H 1.08998 * 109.58959 * 246.20295 * 10 9 7 34 34 H 1.09003 * 109.58181 * 6.48778 * 10 9 7 35 35 H 1.08998 * 109.50939 * 294.70294 * 11 10 9 36 36 H 1.09003 * 109.48831 * 174.59930 * 11 10 9 37 37 H 1.09002 * 109.46115 * 178.59924 * 12 11 10 38 38 H 1.09004 * 109.45806 * 58.62809 * 12 11 10 39 39 H 0.96996 * 120.00019 * 334.99847 * 15 13 12 40 40 H 0.96998 * 119.99569 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.59005 * 113.79701 * 24 9 7 42 42 H 1.09002 * 109.70256 * 353.43937 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8457 3.0485 -0.0011 7 6 5.3527 3.0485 -0.0010 8 8 5.9591 1.9982 0.0000 9 7 6.0265 4.2157 -0.0009 10 6 5.3059 5.4961 -0.0016 11 6 5.8138 6.3481 1.1659 12 6 7.3352 6.4833 1.0693 13 6 7.9791 5.0984 1.1664 14 1 7.6950 4.6303 2.1089 15 7 9.4368 5.2316 1.1064 16 6 10.2357 4.2701 1.6654 17 1 9.7912 3.4134 2.1501 18 6 11.6169 4.3960 1.6081 19 7 12.1587 5.4398 1.0169 20 14 12.7068 3.0848 2.3712 21 1 13.0088 2.0413 1.3587 22 1 13.9737 3.7038 2.8371 23 1 12.0044 2.4670 3.5245 24 6 7.4956 4.2320 -0.0014 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.3879 2.1185 -0.0004 31 1 3.4826 3.5625 0.8888 32 1 3.4820 3.5620 -0.8911 33 1 5.4882 6.0176 -0.9412 34 1 4.2374 5.3141 0.1140 35 1 5.5504 5.8681 2.1084 36 1 5.3571 7.3368 1.1203 37 1 7.6966 7.1098 1.8849 38 1 7.5993 6.9406 0.1157 39 1 9.8360 6.0008 0.6708 40 1 13.1238 5.5279 0.9773 41 1 7.8562 4.6505 -0.9410 42 1 7.8744 3.2166 0.1155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207871932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:42 Heat of formation + Delta-G solvation = -61.282577 kcal Electronic energy + Delta-G solvation = -22575.998551 eV Core-core repulsion = 19170.248018 eV Total energy + Delta-G solvation = -3405.750533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36658 -39.09076 -37.09693 -35.32297 -34.43583 -32.38569 -31.61368 -31.11343 -29.77286 -28.00250 -25.03952 -23.96638 -23.21008 -21.85689 -21.14089 -20.05942 -18.68953 -17.54562 -17.05595 -16.52967 -16.13315 -15.87177 -15.25251 -15.15953 -14.67847 -14.22585 -14.04759 -13.70139 -13.60313 -13.32916 -13.14594 -12.83281 -12.69580 -12.40819 -12.30951 -12.16307 -11.97378 -11.67657 -11.33235 -11.03096 -10.80987 -10.65858 -10.55082 -10.16662 -9.98128 -9.78901 -9.64707 -9.23113 -9.20966 -9.01053 -8.25365 -6.95972 -5.75256 -3.04791 2.59394 2.79259 2.95783 3.42967 3.49181 3.54120 3.56288 4.41691 4.58722 4.62341 4.75078 4.77093 4.88188 4.99091 5.03196 5.08759 5.13032 5.25630 5.48160 5.51996 5.56384 5.58725 5.63229 5.71034 5.80810 5.96662 6.06023 6.19026 6.23821 6.25116 6.37621 6.53731 6.79520 6.87759 7.06446 7.30963 7.73188 7.76340 8.18269 8.42957 8.55821 9.55052 10.08965 10.44168 11.47067 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.003613 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.206768 B = 7747.428555 C = 8781.499087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.740 5.740 4 C 0.509 3.491 5 O -0.488 6.488 6 C -0.164 4.164 7 C 0.508 3.492 8 O -0.497 6.497 9 N -0.611 5.611 10 C 0.107 3.893 11 C -0.130 4.130 12 C -0.126 4.126 13 C 0.168 3.832 14 H 0.050 0.950 15 N -0.719 5.719 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.094 3.906 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.397 0.603 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.060 0.940 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.598 0.287 -2.940 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.396 5.396 4 C 0.293 3.707 5 O -0.359 6.359 6 C -0.207 4.207 7 C 0.292 3.708 8 O -0.370 6.370 9 N -0.347 5.347 10 C -0.016 4.016 11 C -0.169 4.169 12 C -0.164 4.164 13 C 0.057 3.943 14 H 0.068 0.932 15 N -0.359 5.359 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.030 4.030 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.231 0.769 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.531 -1.158 -2.833 25.714 hybrid contribution 0.362 0.114 0.172 0.417 sum -25.169 -1.044 -2.661 25.331 Atomic orbital electron populations 1.21999 0.94539 1.03184 1.02400 1.21257 0.93979 0.83149 1.02504 1.46055 1.06957 1.08737 1.77846 1.20128 0.82176 0.91073 0.77351 1.90889 1.54328 1.45480 1.45212 1.21641 0.96356 0.96621 1.06064 1.19875 0.88570 0.84112 0.78198 1.90865 1.69087 1.30116 1.46909 1.48280 1.07984 1.04854 1.73552 1.21717 0.95801 0.84902 0.99200 1.21887 0.97170 0.99437 0.98408 1.21822 0.93597 0.98780 1.02241 1.20503 0.85594 0.92560 0.95629 0.93180 1.42375 0.98618 1.26771 1.68144 1.19286 0.88049 1.00918 1.28953 0.91030 1.24741 0.96673 0.98073 1.01249 1.69663 1.10363 1.29424 1.48695 0.86186 0.80130 0.80979 0.78916 1.21582 1.21796 1.20665 1.22743 0.76013 1.03785 1.00457 0.90865 0.92006 0.92029 0.91589 0.91555 0.76911 0.86364 0.86468 0.91468 0.90549 0.91618 0.91072 0.91456 0.92048 0.78102 0.93507 0.92209 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 10.03 37.16 0.37 -0.38 16 2 C 0.11 0.93 6.39 -4.04 -0.03 0.91 16 3 N -0.74 -6.17 5.56 -60.29 -0.33 -6.50 16 4 C 0.51 6.52 7.82 -10.98 -0.09 6.44 16 5 O -0.49 -9.26 14.18 -18.96 -0.27 -9.53 16 6 C -0.16 -1.67 4.53 -29.03 -0.13 -1.80 16 7 C 0.51 8.30 7.69 -10.99 -0.08 8.22 16 8 O -0.50 -11.05 13.60 -18.96 -0.26 -11.31 16 9 N -0.61 -9.32 2.97 -172.74 -0.51 -9.84 16 10 C 0.11 1.12 6.34 -3.71 -0.02 1.09 16 11 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 12 C -0.13 -1.95 5.35 -26.69 -0.14 -2.09 16 13 C 0.17 3.39 2.92 -67.79 -0.20 3.19 16 14 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 15 N -0.72 -18.15 5.13 -53.29 -0.27 -18.43 16 16 C -0.24 -6.88 9.93 -15.06 -0.15 -7.03 16 17 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 20 Si 0.91 23.22 29.55 -169.99 -5.02 18.19 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.09 1.84 6.02 -3.69 -0.02 1.82 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.40 1.83 8.47 -40.82 -0.35 1.48 16 31 H 0.12 0.83 7.69 -51.93 -0.40 0.43 16 32 H 0.12 0.78 7.94 -51.93 -0.41 0.37 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.39 10.17 7.80 -40.82 -0.32 9.85 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.09 2.11 7.01 -51.93 -0.36 1.74 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -37.93 342.60 -8.30 -46.23 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.76 Total: 5.45 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.75 Total: 8.30 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.40 Total: -62.50 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.53 Total: -20.83 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.93 -8.30 -46.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207871932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.053 kcal (2) G-P(sol) polarization free energy of solvation -37.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds