Wall clock time and date at job start Tue Mar 31 2020 02:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46861 * 2 1 4 4 C 1.34772 * 119.99944 * 180.02562 * 3 2 1 5 5 O 1.21280 * 120.00200 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00071 * 179.97438 * 4 3 2 7 7 C 1.50701 * 109.47139 * 179.97438 * 6 4 3 8 8 O 1.21284 * 119.99890 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99951 * 180.02562 * 7 6 4 10 10 C 1.46931 * 120.63145 * 359.97321 * 9 7 6 11 11 C 1.53191 * 108.76527 * 126.40558 * 10 9 7 12 12 C 1.53046 * 109.30997 * 54.65907 * 11 10 9 13 13 C 1.53039 * 109.52798 * 298.61471 * 12 11 10 14 14 H 1.09000 * 109.49863 * 301.42271 * 13 12 11 15 15 N 1.46495 * 109.49863 * 181.35646 * 13 12 11 16 16 C 1.36943 * 119.99932 * 154.99770 * 15 13 12 17 17 H 1.08002 * 119.99772 * 0.02562 * 16 15 13 18 18 C 1.38811 * 119.99697 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99762 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46926 * 90.00654 * 20 18 16 22 22 H 1.48501 * 109.47385 * 210.00286 * 20 18 16 23 23 H 1.48501 * 109.47294 * 330.00562 * 20 18 16 24 24 C 1.46919 * 120.63242 * 180.02562 * 9 7 6 25 25 H 1.09004 * 109.46712 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47210 * 299.99903 * 1 2 3 27 27 H 1.08994 * 109.46947 * 59.99992 * 1 2 3 28 28 H 1.09000 * 109.47210 * 240.00097 * 2 1 3 29 29 H 1.08999 * 109.47042 * 119.99523 * 2 1 3 30 30 H 0.97001 * 119.99697 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46882 * 59.99853 * 6 4 3 32 32 H 1.08997 * 109.46741 * 300.00211 * 6 4 3 33 33 H 1.08998 * 109.58959 * 246.20295 * 10 9 7 34 34 H 1.09003 * 109.58181 * 6.48778 * 10 9 7 35 35 H 1.08998 * 109.50939 * 294.70294 * 11 10 9 36 36 H 1.09003 * 109.48831 * 174.59930 * 11 10 9 37 37 H 1.09002 * 109.46115 * 178.59924 * 12 11 10 38 38 H 1.09004 * 109.45806 * 58.62809 * 12 11 10 39 39 H 0.96996 * 120.00019 * 334.99847 * 15 13 12 40 40 H 0.96998 * 119.99569 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.59005 * 113.79701 * 24 9 7 42 42 H 1.09002 * 109.70256 * 353.43937 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8457 3.0485 -0.0011 7 6 5.3527 3.0485 -0.0010 8 8 5.9591 1.9982 0.0000 9 7 6.0265 4.2157 -0.0009 10 6 5.3059 5.4961 -0.0016 11 6 5.8138 6.3481 1.1659 12 6 7.3352 6.4833 1.0693 13 6 7.9791 5.0984 1.1664 14 1 7.6950 4.6303 2.1089 15 7 9.4368 5.2316 1.1064 16 6 10.2357 4.2701 1.6654 17 1 9.7912 3.4134 2.1501 18 6 11.6169 4.3960 1.6081 19 7 12.1587 5.4398 1.0169 20 14 12.7068 3.0848 2.3712 21 1 13.0088 2.0413 1.3587 22 1 13.9737 3.7038 2.8371 23 1 12.0044 2.4670 3.5245 24 6 7.4956 4.2320 -0.0014 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.3879 2.1185 -0.0004 31 1 3.4826 3.5625 0.8888 32 1 3.4820 3.5620 -0.8911 33 1 5.4882 6.0176 -0.9412 34 1 4.2374 5.3141 0.1140 35 1 5.5504 5.8681 2.1084 36 1 5.3571 7.3368 1.1203 37 1 7.6966 7.1098 1.8849 38 1 7.5993 6.9406 0.1157 39 1 9.8360 6.0008 0.6708 40 1 13.1238 5.5279 0.9773 41 1 7.8562 4.6505 -0.9410 42 1 7.8744 3.2166 0.1155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207871932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:41 Heat of formation + Delta-G solvation = -90.805272 kcal Electronic energy + Delta-G solvation = -22577.278751 eV Core-core repulsion = 19170.248018 eV Total energy + Delta-G solvation = -3407.030733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50663 -40.20599 -38.47181 -36.28892 -36.08497 -33.99593 -32.69310 -32.49762 -30.75914 -29.50697 -26.28330 -25.86761 -23.91361 -23.20157 -22.20147 -21.36988 -19.91123 -19.13044 -18.58417 -17.52575 -17.10673 -16.95788 -16.66257 -16.24632 -16.07137 -15.55994 -15.41302 -15.26399 -14.80906 -14.57820 -14.42492 -13.92405 -13.87794 -13.62104 -13.24523 -13.09144 -12.93126 -12.92359 -12.65810 -12.48484 -12.31651 -12.22864 -12.01705 -11.85278 -11.67211 -11.32625 -11.12684 -10.98634 -10.46009 -10.05314 -9.67157 -9.01078 -8.01351 -5.30089 1.40999 1.43758 1.51630 1.65131 1.76584 1.83678 2.43799 2.52776 3.31719 3.44338 3.78288 3.90435 4.04926 4.12410 4.18918 4.22826 4.24803 4.37561 4.41173 4.41836 4.42658 4.54596 4.68639 4.82406 4.92245 4.95845 4.98887 5.08581 5.10624 5.19774 5.29230 5.40379 5.44120 5.51965 5.52457 5.63919 6.22343 6.53321 6.65435 7.28142 7.28485 7.43912 8.01616 8.26555 9.21283 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.003613 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.206768 B = 7747.428555 C = 8781.499087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.716 5.716 4 C 0.500 3.500 5 O -0.564 6.564 6 C -0.146 4.146 7 C 0.495 3.505 8 O -0.570 6.570 9 N -0.608 5.608 10 C 0.099 3.901 11 C -0.122 4.122 12 C -0.119 4.119 13 C 0.167 3.833 14 H 0.028 0.972 15 N -0.730 5.730 16 C -0.245 4.245 17 H 0.061 0.939 18 C -0.068 4.068 19 N -0.963 5.963 20 Si 0.967 3.033 21 H -0.290 1.290 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.108 3.892 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.421 0.579 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.378 0.622 40 H 0.254 0.746 41 H 0.055 0.945 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.622 2.286 -2.981 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.372 5.372 4 C 0.286 3.714 5 O -0.440 6.440 6 C -0.188 4.188 7 C 0.283 3.717 8 O -0.448 6.448 9 N -0.342 5.342 10 C -0.022 4.022 11 C -0.160 4.160 12 C -0.157 4.157 13 C 0.057 3.943 14 H 0.046 0.954 15 N -0.370 5.370 16 C -0.377 4.377 17 H 0.079 0.921 18 C -0.260 4.260 19 N -0.613 5.613 20 Si 0.796 3.204 21 H -0.218 1.218 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.018 4.018 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.259 0.741 31 H 0.183 0.817 32 H 0.186 0.814 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.132 0.868 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.210 0.790 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -29.691 0.910 -2.869 29.844 hybrid contribution 1.515 -0.507 0.172 1.607 sum -28.176 0.402 -2.697 28.308 Atomic orbital electron populations 1.21932 0.91208 1.04087 1.03674 1.21324 0.96549 0.82823 1.00785 1.45868 1.05982 1.09716 1.75586 1.20713 0.82896 0.91574 0.76226 1.90880 1.56464 1.47757 1.48942 1.21692 0.90866 0.95731 1.10532 1.21041 0.91294 0.83003 0.76400 1.90850 1.71094 1.32842 1.50016 1.48341 1.06008 1.07072 1.72788 1.22212 0.98098 0.82124 0.99716 1.21899 0.93304 1.02037 0.98804 1.21754 0.96939 0.94852 1.02195 1.20685 0.83200 0.95765 0.94614 0.95371 1.42521 1.00773 1.25782 1.67972 1.19493 0.88846 1.01088 1.28297 0.92078 1.25467 0.97883 1.00231 1.02455 1.69783 1.10342 1.30971 1.50191 0.85249 0.78495 0.78559 0.78136 1.21752 1.21178 1.19990 1.22113 0.79696 1.00265 0.99698 0.90267 0.90710 0.90616 0.93385 0.93522 0.74118 0.81663 0.81394 0.89749 0.85074 0.91670 0.86785 0.92264 0.91560 0.78985 0.93763 0.92649 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.03 71.98 0.72 -0.25 16 2 C 0.11 1.67 6.39 86.38 0.55 2.22 16 3 N -0.72 -9.99 5.56 -463.04 -2.57 -12.56 16 4 C 0.50 12.07 7.82 87.66 0.69 12.75 16 5 O -0.56 -22.30 14.18 20.41 0.29 -22.01 16 6 C -0.15 -2.37 4.53 29.10 0.13 -2.24 16 7 C 0.49 15.77 7.69 87.66 0.67 16.44 16 8 O -0.57 -26.82 13.60 20.40 0.28 -26.55 16 9 N -0.61 -17.64 2.97 -818.83 -2.43 -20.07 16 10 C 0.10 1.55 6.34 86.36 0.55 2.10 16 11 C -0.12 -2.17 6.08 30.67 0.19 -1.99 16 12 C -0.12 -3.50 5.35 30.62 0.16 -3.34 16 13 C 0.17 6.90 2.92 45.08 0.13 7.03 16 14 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 15 N -0.73 -38.42 5.13 -322.51 -1.65 -40.07 16 16 C -0.25 -14.59 9.93 84.03 0.83 -13.76 16 17 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 18 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 19 N -0.96 -60.22 13.06 21.65 0.28 -59.94 16 20 Si 0.97 49.08 29.55 68.60 2.03 51.10 16 21 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.27 -13.50 7.11 99.48 0.71 -12.80 16 24 C 0.11 4.39 6.02 86.38 0.52 4.91 16 25 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 26 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.42 1.84 8.47 -92.71 -0.79 1.05 16 31 H 0.17 1.18 7.69 -2.39 -0.02 1.17 16 32 H 0.17 1.08 7.94 -2.39 -0.02 1.06 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.13 0.71 5.93 -2.39 -0.01 0.69 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.38 20.68 7.80 -92.71 -0.72 19.95 16 40 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.91 7.01 -2.39 -0.02 1.89 16 Total: -1.00 -93.93 342.60 1.35 -92.58 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.48 Total: 17.25 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 5.62 Total: 20.28 kcal Atomic # 7 Polarization: -126.27 SS G_CDS: -6.38 Total: -132.65 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: 0.57 Total: -48.56 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.03 Total: 51.10 kcal Total: -93.93 1.35 -92.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207871932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.770 kcal (2) G-P(sol) polarization free energy of solvation -93.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds