Wall clock time and date at job start Tue Mar 31 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47040 * 2 1 4 4 C 1.34778 * 119.99906 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99998 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00142 * 180.02562 * 4 3 2 7 7 C 1.50702 * 109.47422 * 180.02562 * 6 4 3 8 8 O 1.21277 * 119.99403 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99899 * 180.02562 * 7 6 4 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.09003 * 109.47170 * 299.99493 * 1 2 3 25 25 H 1.08999 * 109.47506 * 59.99861 * 1 2 3 26 26 H 1.09004 * 109.47364 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46736 * 240.00196 * 2 1 3 28 28 H 1.09000 * 109.47080 * 120.00465 * 2 1 3 29 29 H 0.96997 * 120.00014 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.46618 * 60.00522 * 6 4 3 31 31 H 1.09000 * 109.47434 * 300.00601 * 6 4 3 32 32 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 34 34 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 35 35 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 36 36 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 37 37 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 38 38 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 40 40 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 41 41 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 42 42 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3528 3.0483 0.0010 8 8 5.9591 1.9980 0.0000 9 7 6.0266 4.2155 0.0020 10 6 7.4916 4.2154 0.0013 11 6 8.0005 4.0860 -1.4365 12 6 9.5321 4.0553 -1.4306 13 7 10.0289 5.2390 -0.7160 14 6 10.9371 6.0787 -1.3039 15 1 10.9649 7.1225 -1.0278 16 6 11.8217 5.5883 -2.2545 17 7 12.0263 4.2921 -2.3564 18 14 12.7219 6.7680 -3.3891 19 1 14.0065 7.1730 -2.7639 20 1 12.9923 6.0978 -4.6864 21 1 11.8824 7.9712 -3.6191 22 6 9.5332 5.5045 0.6414 23 6 8.0017 5.5227 0.6123 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3880 2.1184 0.0004 30 1 3.4821 3.5617 0.8912 31 1 3.4827 3.5624 -0.8888 32 1 5.5416 5.0555 0.0024 33 1 7.8549 3.3733 0.5902 34 1 7.6560 4.9395 -2.0206 35 1 7.6198 3.1650 -1.8781 36 1 9.9018 4.0656 -2.4559 37 1 9.8775 3.1526 -0.9267 38 1 12.6447 3.9494 -3.0205 39 1 9.8767 4.7200 1.3157 40 1 9.9057 6.4698 0.9841 41 1 7.6197 5.6228 1.6282 42 1 7.6592 6.3642 0.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226993996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:08 Heat of formation + Delta-G solvation = -85.987764 kcal Electronic energy + Delta-G solvation = -22397.280391 eV Core-core repulsion = 18990.458562 eV Total energy + Delta-G solvation = -3406.821830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36353 -40.11312 -38.75284 -36.26840 -35.84638 -33.97220 -32.64762 -31.73155 -31.27312 -29.98826 -26.87319 -24.32920 -23.90939 -23.48994 -21.98515 -21.28908 -20.76677 -18.84673 -18.31491 -17.74223 -17.01583 -16.90256 -16.73009 -16.40332 -15.93371 -15.56529 -15.36055 -14.91438 -14.84985 -14.55888 -14.38287 -14.21690 -14.01458 -13.27518 -13.16375 -13.02748 -12.93292 -12.66322 -12.64566 -12.53330 -12.31820 -12.11367 -12.06320 -11.84858 -11.52145 -11.37497 -11.11205 -10.58305 -10.43619 -10.04863 -9.92096 -8.71913 -7.87547 -5.34629 1.47212 1.48837 1.58919 1.67667 1.80509 1.92405 2.51633 2.58490 3.28428 3.57931 3.67199 3.88865 4.05461 4.09788 4.21709 4.22712 4.35525 4.45041 4.46957 4.48249 4.54088 4.67200 4.81508 4.89667 4.98460 5.07793 5.07941 5.09853 5.14395 5.28511 5.32147 5.46039 5.52626 5.62136 5.64491 5.68802 6.38082 6.62506 6.73173 7.12442 7.35538 7.50625 7.83710 8.37101 9.19728 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.040798 B = 0.002934 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.137914 B = 9542.349939 C = 9809.406291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.109 3.891 3 N -0.717 5.717 4 C 0.500 3.500 5 O -0.563 6.563 6 C -0.148 4.148 7 C 0.498 3.502 8 O -0.563 6.563 9 N -0.709 5.709 10 C 0.162 3.838 11 C -0.129 4.129 12 C 0.182 3.818 13 N -0.609 5.609 14 C -0.260 4.260 15 H 0.076 0.924 16 C -0.058 4.058 17 N -0.941 5.941 18 Si 0.972 3.028 19 H -0.284 1.284 20 H -0.297 1.297 21 H -0.264 1.264 22 C 0.139 3.861 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.420 0.580 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.418 0.582 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.054 0.946 37 H -0.017 1.017 38 H 0.249 0.751 39 H 0.007 0.993 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.723 2.401 6.001 28.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.373 5.373 4 C 0.286 3.714 5 O -0.439 6.439 6 C -0.190 4.190 7 C 0.284 3.716 8 O -0.440 6.440 9 N -0.363 5.363 10 C 0.057 3.943 11 C -0.169 4.169 12 C 0.055 3.945 13 N -0.333 5.333 14 C -0.390 4.390 15 H 0.094 0.906 16 C -0.253 4.253 17 N -0.588 5.588 18 Si 0.799 3.201 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.189 1.189 22 C 0.013 3.987 23 C -0.157 4.157 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.258 0.742 30 H 0.185 0.815 31 H 0.180 0.820 32 H 0.256 0.744 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.001 0.999 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.642 0.905 5.917 27.306 hybrid contribution 0.806 0.379 -0.778 1.182 sum -25.836 1.283 5.138 26.374 Atomic orbital electron populations 1.21932 0.91332 1.04082 1.03604 1.21316 0.96475 0.82856 1.00823 1.45890 1.06116 1.09671 1.75623 1.20726 0.82840 0.91665 0.76208 1.90882 1.56384 1.47730 1.48944 1.21638 0.91166 0.95587 1.10629 1.20917 0.91073 0.83502 0.76137 1.90872 1.71082 1.32950 1.49076 1.45943 1.06276 1.08871 1.75195 1.20585 0.79781 0.98587 0.95377 1.22287 0.97217 1.00114 0.97317 1.20447 0.89860 0.87248 0.96909 1.44359 1.48478 1.27857 1.12609 1.19587 1.09425 0.90951 1.19064 0.90600 1.25943 0.98662 0.97171 1.03532 1.70228 1.38495 1.13402 1.36653 0.85214 0.78489 0.78502 0.77861 1.21064 1.22326 1.18861 1.21078 0.92980 0.98912 0.85746 1.22105 0.96298 0.95715 1.01621 0.90662 0.90821 0.90239 0.93507 0.93291 0.74227 0.81456 0.81956 0.74429 0.93474 0.91533 0.94270 0.92743 0.99939 0.94229 0.97541 0.91162 0.88849 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.03 71.98 0.72 -0.25 16 2 C 0.11 1.63 6.39 86.38 0.55 2.18 16 3 N -0.72 -9.76 5.56 -463.07 -2.57 -12.33 16 4 C 0.50 11.54 7.82 87.66 0.69 12.22 16 5 O -0.56 -21.44 14.18 20.40 0.29 -21.15 16 6 C -0.15 -2.17 6.19 29.10 0.18 -1.99 16 7 C 0.50 14.20 7.79 87.66 0.68 14.89 16 8 O -0.56 -24.42 13.84 20.42 0.28 -24.14 16 9 N -0.71 -17.48 5.08 -442.35 -2.25 -19.72 16 10 C 0.16 5.62 2.41 45.03 0.11 5.73 16 11 C -0.13 -5.39 5.66 30.68 0.17 -5.21 16 12 C 0.18 9.58 5.30 86.36 0.46 10.04 16 13 N -0.61 -31.39 3.00 -699.10 -2.09 -33.48 16 14 C -0.26 -14.40 9.58 84.03 0.81 -13.60 16 15 H 0.08 3.97 7.89 -2.91 -0.02 3.94 16 16 C -0.06 -3.34 4.92 84.86 0.42 -2.92 16 17 N -0.94 -58.43 11.20 21.65 0.24 -58.19 16 18 Si 0.97 45.46 29.59 68.60 2.03 47.49 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 C 0.14 5.67 6.52 86.36 0.56 6.23 16 23 C -0.12 -3.59 5.55 30.67 0.17 -3.42 16 24 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.42 1.87 8.47 -92.71 -0.79 1.08 16 30 H 0.17 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.42 6.19 8.60 -92.71 -0.80 5.40 16 33 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 34 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.05 3.21 6.06 -2.39 -0.01 3.19 16 37 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -90.09 342.59 0.89 -89.20 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -0.56 Total: 8.42 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 5.52 Total: 23.90 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -6.67 Total: -123.73 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: 0.57 Total: -45.29 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -90.09 0.89 -89.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226993996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.217 kcal (2) G-P(sol) polarization free energy of solvation -90.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds