Wall clock time and date at job start Tue Mar 31 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 119.99673 * 2 1 4 4 N 1.34766 * 120.00390 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99820 * 359.97438 * 4 2 1 6 6 C 1.46500 * 120.00622 * 179.97438 * 4 2 1 7 7 C 1.50699 * 109.47073 * 270.00276 * 6 4 2 8 8 O 1.21278 * 120.00063 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00384 * 179.97438 * 7 6 4 10 10 C 1.46504 * 119.99693 * 355.08459 * 9 7 6 11 11 C 1.46498 * 120.00428 * 175.09175 * 9 7 6 12 12 C 1.52999 * 109.47445 * 94.74586 * 11 9 7 13 13 H 1.09003 * 112.73632 * 316.02918 * 12 11 9 14 14 C 1.53490 * 113.46763 * 86.85125 * 12 11 9 15 15 C 1.53242 * 83.43051 * 140.67886 * 14 12 11 16 16 N 1.47064 * 113.46528 * 185.29035 * 12 11 9 17 17 C 1.36933 * 136.06036 * 38.06587 * 16 12 11 18 18 H 1.07998 * 120.00436 * 354.64594 * 17 16 12 19 19 C 1.38819 * 120.00213 * 174.92595 * 17 16 12 20 20 N 1.31620 * 119.99721 * 359.72421 * 19 17 16 21 21 Si 1.86797 * 120.00141 * 179.72337 * 19 17 16 22 22 H 1.48500 * 109.47173 * 59.99951 * 21 19 17 23 23 H 1.48498 * 109.46775 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47125 * 299.99723 * 21 19 17 25 25 H 1.09002 * 109.46646 * 240.00332 * 1 2 3 26 26 H 1.09003 * 109.47280 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47340 * 120.00385 * 1 2 3 28 28 H 1.09005 * 109.47216 * 269.99992 * 5 4 2 29 29 H 1.08996 * 109.47248 * 30.00084 * 5 4 2 30 30 H 1.09009 * 109.47428 * 150.00133 * 5 4 2 31 31 H 1.09000 * 109.47648 * 149.99920 * 6 4 2 32 32 H 1.09007 * 109.47073 * 29.99614 * 6 4 2 33 33 H 1.08994 * 109.47536 * 270.00063 * 10 9 7 34 34 H 1.09002 * 109.47273 * 30.00666 * 10 9 7 35 35 H 1.09004 * 109.46946 * 149.99634 * 10 9 7 36 36 H 1.09001 * 109.46532 * 334.74104 * 11 9 7 37 37 H 1.09001 * 109.47170 * 214.74790 * 11 9 7 38 38 H 1.08992 * 114.21114 * 254.43578 * 14 12 11 39 39 H 1.09003 * 114.20558 * 27.06683 * 14 12 11 40 40 H 1.08998 * 113.38451 * 219.29776 * 15 14 12 41 41 H 1.08995 * 113.46921 * 88.92464 * 15 14 12 42 42 H 0.96993 * 120.00151 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4484 -2.4358 -0.0005 6 6 3.6459 -1.1671 -0.0011 7 6 4.1476 -1.1668 -1.4221 8 8 3.3592 -1.1669 -2.3436 9 7 5.4726 -1.1662 -1.6690 10 6 6.4242 -1.0573 -0.5604 11 6 5.9613 -1.2744 -3.0458 12 6 6.2208 0.1253 -3.6064 13 1 5.4231 0.8290 -3.3685 14 6 7.6242 0.6601 -3.2896 15 6 7.5471 1.2063 -4.7192 16 7 6.5979 0.1262 -5.0279 17 6 6.2309 -0.5744 -6.1458 18 1 5.5455 -1.4048 -6.0619 19 6 6.7445 -0.2210 -7.3861 20 7 7.5799 0.7909 -7.4884 21 14 6.2499 -1.1816 -8.9099 22 1 4.7788 -1.0960 -9.0932 23 1 6.9315 -0.6092 -10.0986 24 1 6.6469 -2.6035 -8.7492 25 1 -0.3633 -0.5138 0.8901 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5139 -0.8899 28 1 1.2671 -2.7507 1.0272 29 1 0.4958 -2.3054 -0.5139 30 1 2.0373 -3.1954 -0.5148 31 1 4.0095 -2.0572 0.5124 32 1 4.0094 -0.2772 0.5128 33 1 6.6437 -0.0064 -0.3719 34 1 5.9919 -1.5045 0.3348 35 1 7.3449 -1.5801 -0.8193 36 1 5.2134 -1.7782 -3.6582 37 1 6.8878 -1.8484 -3.0585 38 1 7.6459 1.4278 -2.5162 39 1 8.3766 -0.1157 -3.1477 40 1 8.4877 1.1264 -5.2642 41 1 7.1070 2.2016 -4.7805 42 1 7.9385 1.0381 -8.3550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230818865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:02 Heat of formation + Delta-G solvation = 3.097104 kcal Electronic energy + Delta-G solvation = -23059.566802 eV Core-core repulsion = 19656.607982 eV Total energy + Delta-G solvation = -3402.958820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37027 -39.15598 -37.87363 -35.58961 -35.08386 -32.13352 -31.01865 -29.06312 -27.87084 -27.72904 -26.52416 -25.54244 -23.38128 -22.24380 -19.94901 -19.16611 -18.79611 -17.24120 -17.12005 -16.74395 -16.46095 -15.56657 -15.29991 -15.23872 -14.58611 -14.01036 -13.68876 -13.51689 -13.41977 -13.07160 -13.06538 -12.84177 -12.59069 -12.54214 -12.44955 -12.25990 -11.91486 -11.74823 -11.42859 -11.04357 -10.82640 -10.70835 -10.39471 -9.99670 -9.93120 -9.79852 -9.74373 -9.38981 -8.77167 -8.71929 -8.25148 -6.79368 -5.69476 -3.00840 2.44788 2.76704 2.80017 3.32961 3.45014 3.49143 3.50828 4.44513 4.53186 4.60380 4.84256 4.88129 5.04744 5.11694 5.15143 5.19610 5.27380 5.31326 5.43478 5.44132 5.52959 5.59497 5.68174 5.72831 5.86203 6.03312 6.12778 6.25008 6.34732 6.51491 6.61576 6.75570 6.95158 7.16149 7.30823 7.48834 7.59218 7.63457 8.03807 8.05795 8.38743 9.12244 9.78425 10.73560 11.48879 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.004164 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.795608 B = 6721.919865 C = 7270.645339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.516 3.484 3 O -0.541 6.541 4 N -0.604 5.604 5 C 0.083 3.917 6 C 0.098 3.902 7 C 0.492 3.508 8 O -0.526 6.526 9 N -0.611 5.611 10 C 0.079 3.921 11 C 0.117 3.883 12 C 0.133 3.867 13 H 0.043 0.957 14 C -0.167 4.167 15 C 0.158 3.842 16 N -0.601 5.601 17 C -0.215 4.215 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.024 0.976 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 -7.270 20.948 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.305 3.695 3 O -0.417 6.417 4 N -0.337 5.337 5 C -0.060 4.060 6 C -0.029 4.029 7 C 0.278 3.722 8 O -0.402 6.402 9 N -0.345 5.345 10 C -0.065 4.065 11 C -0.006 4.006 12 C 0.025 3.975 13 H 0.060 0.940 14 C -0.206 4.206 15 C 0.033 3.967 16 N -0.327 5.327 17 C -0.342 4.342 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.048 -6.794 20.066 22.662 hybrid contribution -0.242 -0.452 -0.981 1.107 sum -8.289 -7.247 19.084 22.033 Atomic orbital electron populations 1.21914 0.91492 1.05464 1.04070 1.20827 0.90784 0.82886 0.75005 1.90734 1.70753 1.31052 1.49170 1.47462 1.05319 1.06995 1.73962 1.21807 0.97655 0.85160 1.01389 1.21352 0.81397 1.05119 0.95030 1.21075 0.82457 0.76910 0.91804 1.90725 1.54782 1.48601 1.46053 1.47893 1.05385 1.72868 1.08373 1.21806 0.93570 1.02166 0.88914 1.21877 0.99590 0.99265 0.79900 1.22411 0.94621 0.93741 0.86735 0.93981 1.23690 0.97535 1.00358 0.99000 1.21868 0.94859 0.90870 0.89128 1.45681 1.44866 1.39681 1.02454 1.18875 1.23165 1.08378 0.83779 0.90298 1.24794 1.00159 0.98277 0.97191 1.69835 1.34472 1.29073 1.23449 0.86219 0.78017 0.79074 0.82598 1.21172 1.21580 1.21107 0.89514 0.89023 0.89119 0.92378 0.90609 0.90947 0.87720 0.87060 0.92262 0.91709 0.90725 0.90014 0.90549 0.92799 0.90638 0.91668 0.95774 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 8.87 36.00 0.32 -1.14 16 2 C 0.52 6.88 7.78 -10.99 -0.09 6.80 16 3 O -0.54 -9.69 16.67 5.55 0.09 -9.60 16 4 N -0.60 -6.92 2.36 -182.95 -0.43 -7.35 16 5 C 0.08 0.62 10.24 59.85 0.61 1.23 16 6 C 0.10 1.12 4.35 -5.19 -0.02 1.09 16 7 C 0.49 7.94 7.73 -10.99 -0.08 7.85 16 8 O -0.53 -11.03 15.98 5.56 0.09 -10.94 16 9 N -0.61 -9.21 2.87 -181.57 -0.52 -9.73 16 10 C 0.08 0.79 10.30 59.85 0.62 1.41 16 11 C 0.12 2.21 5.41 -4.04 -0.02 2.19 16 12 C 0.13 2.94 4.32 -72.40 -0.31 2.63 16 13 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.17 -3.26 8.00 -26.35 -0.21 -3.47 16 15 C 0.16 3.94 7.26 -8.64 -0.06 3.88 16 16 N -0.60 -16.25 3.65 -177.16 -0.65 -16.89 16 17 C -0.21 -6.30 10.55 -15.06 -0.16 -6.46 16 18 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -28.41 11.65 55.49 0.65 -27.77 16 21 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 26 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 27 H 0.09 0.70 7.40 -51.93 -0.38 0.32 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.49 6.44 -51.93 -0.33 0.16 16 30 H 0.07 0.56 8.07 -51.92 -0.42 0.14 16 31 H 0.10 0.77 7.51 -51.93 -0.39 0.38 16 32 H 0.11 1.28 7.33 -51.93 -0.38 0.90 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.44 6.44 -51.93 -0.33 0.10 16 35 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 36 H 0.08 1.79 7.35 -51.93 -0.38 1.41 16 37 H 0.08 1.34 7.69 -51.93 -0.40 0.94 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.37 7.93 -51.93 -0.41 0.95 16 40 H 0.06 1.74 7.38 -51.93 -0.38 1.36 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -39.07 348.94 -6.78 -45.84 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.73 Total: -2.53 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 0.49 Total: 15.69 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.95 Total: -61.74 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.18 Total: -20.53 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -39.07 -6.78 -45.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230818865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.940 kcal (2) G-P(sol) polarization free energy of solvation -39.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds