Wall clock time and date at job start Tue Mar 31 2020 02:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 119.99997 * 2 1 4 4 N 1.34775 * 119.99726 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00255 * 359.97438 * 4 2 1 6 6 C 1.46505 * 119.99795 * 180.02562 * 4 2 1 7 7 C 1.50692 * 109.47080 * 269.99781 * 6 4 2 8 8 O 1.21281 * 120.00357 * 0.02562 * 7 6 4 9 9 N 1.34778 * 120.00313 * 179.97438 * 7 6 4 10 10 C 1.46507 * 119.99822 * 354.98330 * 9 7 6 11 11 C 1.46505 * 120.00486 * 174.98294 * 9 7 6 12 12 C 1.53004 * 109.46861 * 275.14383 * 11 9 7 13 13 H 1.09003 * 112.73536 * 44.02400 * 12 11 9 14 14 C 1.53493 * 113.51947 * 273.22775 * 12 11 9 15 15 C 1.53758 * 83.25671 * 218.97372 * 14 12 11 16 16 N 1.47059 * 113.46314 * 174.76579 * 12 11 9 17 17 C 1.36942 * 136.06138 * 321.92165 * 16 12 11 18 18 H 1.07999 * 119.99318 * 355.14402 * 17 16 12 19 19 C 1.38804 * 119.99865 * 174.86605 * 17 16 12 20 20 N 1.31619 * 120.00408 * 0.28244 * 19 17 16 21 21 Si 1.86804 * 119.99785 * 180.27375 * 19 17 16 22 22 H 1.48507 * 109.46632 * 90.00412 * 21 19 17 23 23 H 1.48494 * 109.47322 * 209.99988 * 21 19 17 24 24 H 1.48494 * 109.47173 * 330.00581 * 21 19 17 25 25 H 1.08998 * 109.47592 * 240.00071 * 1 2 3 26 26 H 1.09004 * 109.47062 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47376 * 119.99682 * 1 2 3 28 28 H 1.09002 * 109.47461 * 270.00045 * 5 4 2 29 29 H 1.09004 * 109.46903 * 30.00111 * 5 4 2 30 30 H 1.09004 * 109.47047 * 150.00269 * 5 4 2 31 31 H 1.09005 * 109.46777 * 150.00054 * 6 4 2 32 32 H 1.08998 * 109.47089 * 30.00356 * 6 4 2 33 33 H 1.09003 * 109.46860 * 270.00256 * 10 9 7 34 34 H 1.09001 * 109.46610 * 29.99642 * 10 9 7 35 35 H 1.08994 * 109.46947 * 149.99822 * 10 9 7 36 36 H 1.08996 * 109.47035 * 155.14315 * 11 9 7 37 37 H 1.08998 * 109.46788 * 35.14173 * 11 9 7 38 38 H 1.08995 * 114.20963 * 332.73481 * 14 12 11 39 39 H 1.08999 * 114.20401 * 105.36297 * 14 12 11 40 40 H 1.08991 * 113.47040 * 271.50503 * 15 14 12 41 41 H 1.09003 * 113.55062 * 140.98544 * 15 14 12 42 42 H 0.97000 * 120.00478 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4483 -2.4359 0.0017 6 6 3.6458 -1.1672 0.0011 7 6 4.1487 -1.1676 -1.4195 8 8 3.3609 -1.1674 -2.3416 9 7 5.4738 -1.1672 -1.6653 10 6 6.4245 -1.0554 -0.5562 11 6 5.9637 -1.2785 -3.0415 12 6 6.0358 -2.7541 -3.4394 13 1 5.1546 -3.3170 -3.1314 14 6 7.3587 -3.4291 -3.0517 15 6 7.1938 -4.1240 -4.4133 16 7 6.4018 -2.9635 -4.8482 17 6 6.1228 -2.3513 -6.0410 18 1 5.4186 -1.5332 -6.0762 19 6 6.7495 -2.7784 -7.2035 20 7 7.6077 -3.7754 -7.1605 21 14 6.3748 -1.9381 -8.8293 22 1 7.3176 -0.8087 -9.0316 23 1 6.5271 -2.9145 -9.9378 24 1 4.9821 -1.4232 -8.8109 25 1 -0.3634 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.2669 -2.7500 1.0296 29 1 0.4956 -2.3059 -0.5119 30 1 2.0372 -3.1960 -0.5119 31 1 4.0089 -2.0572 0.5153 32 1 4.0089 -0.2772 0.5149 33 1 6.6434 -0.0039 -0.3699 34 1 5.9916 -1.5006 0.3396 35 1 7.3456 -1.5784 -0.8132 36 1 6.9567 -0.8345 -3.1107 37 1 5.2836 -0.7540 -3.7127 38 1 8.2078 -2.7481 -2.9936 39 1 7.2844 -4.0990 -2.1951 40 1 6.6180 -5.0480 -4.3622 41 1 8.1300 -4.2397 -4.9595 42 1 8.0459 -4.0736 -7.9728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230818866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:04 Heat of formation + Delta-G solvation = -24.858080 kcal Electronic energy + Delta-G solvation = -23057.251368 eV Core-core repulsion = 19653.080321 eV Total energy + Delta-G solvation = -3404.171048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48621 -40.43935 -39.51061 -36.64436 -36.32360 -34.30753 -31.95620 -30.24928 -29.91719 -28.66477 -27.40990 -26.59475 -25.43871 -23.86928 -21.18907 -20.89412 -19.86164 -18.80445 -18.26873 -18.01879 -17.55203 -17.20059 -16.55470 -16.39829 -16.24010 -15.75763 -15.34456 -14.68170 -14.46273 -14.22756 -14.06325 -13.87142 -13.69413 -13.52491 -13.46426 -13.31322 -13.16053 -13.03452 -12.95626 -12.73585 -12.66090 -12.49499 -12.25034 -11.81969 -11.64579 -11.31629 -11.10389 -10.99533 -10.86916 -9.73372 -9.60137 -8.92766 -7.93149 -5.27567 1.40416 1.42379 1.45838 1.51373 1.59607 1.89981 2.22576 2.46062 3.26514 3.45995 3.56738 3.68814 3.83603 4.13616 4.18347 4.24109 4.29387 4.32952 4.41171 4.47477 4.50812 4.58204 4.68419 4.77043 4.82141 4.89257 4.90566 4.95380 5.00876 5.06246 5.07267 5.22319 5.31812 5.46927 5.53759 5.74561 5.94976 6.30935 6.42618 6.89924 7.07423 7.18829 7.57360 8.58660 9.22939 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.004113 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.603841 B = 6805.446385 C = 7431.587650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.600 6.600 4 N -0.605 5.605 5 C 0.076 3.924 6 C 0.102 3.898 7 C 0.482 3.518 8 O -0.587 6.587 9 N -0.608 5.608 10 C 0.068 3.932 11 C 0.132 3.868 12 C 0.138 3.862 13 H 0.027 0.973 14 C -0.124 4.124 15 C 0.137 3.863 16 N -0.632 5.632 17 C -0.227 4.227 18 H 0.068 0.932 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.974 3.026 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.279 1.279 25 H 0.123 0.877 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.032 0.968 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.012 0.988 41 H 0.048 0.952 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.147 1.257 22.962 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.482 6.482 4 N -0.337 5.337 5 C -0.066 4.066 6 C -0.024 4.024 7 C 0.270 3.730 8 O -0.467 6.467 9 N -0.342 5.342 10 C -0.073 4.073 11 C 0.007 3.993 12 C 0.031 3.969 13 H 0.045 0.955 14 C -0.162 4.162 15 C 0.012 3.988 16 N -0.359 5.359 17 C -0.355 4.355 18 H 0.085 0.915 19 C -0.254 4.254 20 N -0.597 5.597 21 Si 0.802 3.198 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.204 1.204 25 H 0.142 0.858 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.169 0.831 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.051 0.949 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.029 0.971 41 H 0.066 0.934 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.233 1.845 22.147 23.700 hybrid contribution -0.158 0.204 -1.796 1.814 sum -8.391 2.048 20.351 22.108 Atomic orbital electron populations 1.21942 0.88179 1.05930 1.06180 1.21689 0.92622 0.82492 0.73855 1.90675 1.72164 1.33030 1.52287 1.47715 1.05632 1.07912 1.72403 1.22089 0.97441 0.83226 1.03833 1.21504 0.81727 1.07415 0.91765 1.22051 0.82227 0.75373 0.93301 1.90693 1.56426 1.51379 1.48189 1.47990 1.06211 1.71975 1.07994 1.22202 0.93538 1.03044 0.88513 1.21409 0.98952 0.96788 0.82142 1.22457 0.95902 0.94248 0.84327 0.95545 1.23520 0.96378 0.99549 0.96707 1.22207 0.95097 0.89280 0.92211 1.46065 1.57312 1.30984 1.01494 1.19125 1.19682 1.11824 0.84892 0.91455 1.25539 0.99446 0.99591 1.00778 1.69990 1.32111 1.30016 1.27549 0.85152 0.77778 0.77549 0.79304 1.20648 1.21435 1.20399 0.85847 0.89428 0.88319 0.88570 0.89791 0.91673 0.83050 0.86643 0.91614 0.87769 0.89290 0.89270 0.94947 0.89109 0.88496 0.97051 0.93358 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.87 71.23 0.63 -1.82 16 2 C 0.50 12.68 7.78 87.66 0.68 13.36 16 3 O -0.60 -20.99 16.66 -3.04 -0.05 -21.04 16 4 N -0.60 -12.83 2.36 -851.13 -2.01 -14.84 16 5 C 0.08 0.99 10.24 127.77 1.31 2.30 16 6 C 0.10 2.12 4.34 85.63 0.37 2.49 16 7 C 0.48 15.36 7.70 87.65 0.67 16.03 16 8 O -0.59 -25.47 16.06 -3.03 -0.05 -25.52 16 9 N -0.61 -17.61 2.88 -846.73 -2.44 -20.05 16 10 C 0.07 1.12 10.24 127.77 1.31 2.43 16 11 C 0.13 5.04 5.35 86.38 0.46 5.51 16 12 C 0.14 5.81 4.27 41.79 0.18 5.99 16 13 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 14 C -0.12 -4.33 8.03 31.02 0.25 -4.08 16 15 C 0.14 6.65 7.54 83.26 0.63 7.28 16 16 N -0.63 -34.13 3.64 -713.44 -2.60 -36.73 16 17 C -0.23 -13.61 10.55 84.03 0.89 -12.72 16 18 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 20 N -0.95 -58.67 11.42 21.65 0.25 -58.42 16 21 Si 0.97 48.17 29.55 68.60 2.03 50.19 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 25 H 0.12 0.92 8.11 -2.39 -0.02 0.90 16 26 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 27 H 0.10 1.34 7.40 -2.39 -0.02 1.32 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.97 6.44 -2.39 -0.02 0.95 16 30 H 0.06 1.00 8.07 -2.39 -0.02 0.98 16 31 H 0.15 1.70 7.51 -2.38 -0.02 1.68 16 32 H 0.12 2.32 7.32 -2.39 -0.02 2.31 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.95 6.44 -2.39 -0.02 0.93 16 35 H 0.09 1.30 8.07 -2.39 -0.02 1.29 16 36 H 0.09 3.18 7.77 -2.39 -0.02 3.16 16 37 H 0.03 1.53 7.51 -2.39 -0.02 1.51 16 38 H 0.09 2.97 7.94 -2.39 -0.02 2.95 16 39 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.05 2.60 6.91 -2.39 -0.02 2.58 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -89.60 348.80 3.97 -85.63 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.00 Total: 7.14 kcal Atomic # 6 Polarization: 25.80 SS G_CDS: 7.85 Total: 33.64 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -6.80 Total: -130.04 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.10 Total: -46.56 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.19 kcal Total: -89.60 3.97 -85.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230818866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.771 kcal (2) G-P(sol) polarization free energy of solvation -89.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds