Wall clock time and date at job start Tue Mar 31 2020 02:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47046 * 2 1 4 4 C 1.34783 * 119.99915 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99947 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00133 * 180.02562 * 4 3 2 7 7 C 1.50700 * 109.47273 * 179.97438 * 6 4 3 8 8 O 1.21274 * 119.99948 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99759 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00449 * 0.02562 * 9 7 6 11 11 C 1.46502 * 119.99723 * 180.02562 * 9 7 6 12 12 C 1.53002 * 109.47162 * 90.69849 * 11 9 7 13 13 H 1.08993 * 112.77904 * 43.11174 * 12 11 9 14 14 C 1.53240 * 113.38383 * 272.40193 * 12 11 9 15 15 C 1.53493 * 83.42894 * 219.29355 * 14 12 11 16 16 N 1.47060 * 87.98827 * 25.89684 * 15 14 12 17 17 C 1.36941 * 136.05843 * 152.84202 * 16 15 14 18 18 H 1.07995 * 120.00163 * 176.94361 * 17 16 15 19 19 C 1.38810 * 119.99734 * 356.66825 * 17 16 15 20 20 N 1.31623 * 120.00241 * 0.27136 * 19 17 16 21 21 Si 1.86798 * 120.00036 * 180.27470 * 19 17 16 22 22 H 1.48504 * 109.47459 * 89.99905 * 21 19 17 23 23 H 1.48503 * 109.47302 * 210.00014 * 21 19 17 24 24 H 1.48500 * 109.46993 * 329.99944 * 21 19 17 25 25 H 1.08998 * 109.47215 * 59.99560 * 1 2 3 26 26 H 1.08998 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47318 * 299.99832 * 1 2 3 28 28 H 1.09001 * 109.46594 * 240.00020 * 2 1 3 29 29 H 1.08998 * 109.47215 * 120.00440 * 2 1 3 30 30 H 0.96997 * 120.00441 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.47146 * 59.99669 * 6 4 3 32 32 H 1.09006 * 109.47330 * 300.00317 * 6 4 3 33 33 H 1.08994 * 109.47009 * 272.20958 * 10 9 7 34 34 H 1.08996 * 109.46552 * 32.21481 * 10 9 7 35 35 H 1.09004 * 109.46870 * 152.20577 * 10 9 7 36 36 H 1.09003 * 109.47359 * 330.69578 * 11 9 7 37 37 H 1.09002 * 109.47491 * 210.69695 * 11 9 7 38 38 H 1.08997 * 114.32456 * 105.65230 * 14 12 11 39 39 H 1.09001 * 114.19559 * 332.91678 * 14 12 11 40 40 H 1.09004 * 113.46715 * 271.11571 * 15 14 12 41 41 H 1.09001 * 113.51732 * 140.69119 * 15 14 12 42 42 H 0.96999 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8458 3.0482 0.0011 7 6 5.3528 3.0482 0.0023 8 8 5.9592 1.9980 0.0030 9 7 6.0266 4.2154 0.0024 10 6 5.2941 5.4842 0.0020 11 6 7.4916 4.2154 0.0030 12 6 8.0022 4.2329 -1.4393 13 1 7.4514 4.9274 -2.0735 14 6 8.1495 2.8348 -2.0492 15 6 9.4221 3.4309 -2.6667 16 7 9.4621 4.3776 -1.5420 17 6 10.4324 5.0802 -0.8785 18 1 10.1591 5.7644 -0.0890 19 6 11.7676 4.9085 -1.2169 20 7 12.1007 4.0744 -2.1792 21 14 13.0918 5.8610 -0.3067 22 1 13.5463 5.0763 0.8693 23 1 14.2414 6.1018 -1.2153 24 1 12.5404 7.1621 0.1496 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.3880 2.1185 0.0004 31 1 3.4821 3.5618 0.8911 32 1 3.4827 3.5624 -0.8889 33 1 5.0786 5.7789 -1.0249 34 1 4.3593 5.3641 0.5495 35 1 5.8997 6.2534 0.4814 36 1 7.8548 3.3193 0.5062 37 1 7.8548 5.0991 0.5276 38 1 7.3782 2.5782 -2.7754 39 1 8.3338 2.0463 -1.3196 40 1 9.2534 3.9097 -3.6313 41 1 10.2639 2.7386 -2.6814 42 1 13.0337 3.9542 -2.4154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233819701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:13 Heat of formation + Delta-G solvation = -33.423617 kcal Electronic energy + Delta-G solvation = -22639.328979 eV Core-core repulsion = 19234.786502 eV Total energy + Delta-G solvation = -3404.542477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40579 -40.28902 -39.29977 -36.47635 -36.00211 -34.28369 -32.64358 -30.87580 -29.93509 -29.17044 -27.13838 -25.41372 -24.39848 -23.52494 -21.81325 -21.02782 -20.02107 -18.76539 -18.40169 -17.48866 -17.23475 -16.95920 -16.77465 -16.39763 -16.14058 -15.78433 -15.45651 -14.76634 -14.70687 -14.39734 -13.92960 -13.79728 -13.71084 -13.44961 -13.22966 -13.05956 -12.95547 -12.91625 -12.66628 -12.64223 -12.48105 -12.29385 -12.22325 -11.79302 -11.67963 -11.18448 -11.01397 -10.84114 -10.37402 -10.01906 -9.50775 -8.90933 -7.88204 -5.23605 1.44643 1.48705 1.56383 1.70539 1.82115 1.88627 2.42961 2.54673 3.31877 3.40121 3.57254 3.88207 3.97711 4.19979 4.24009 4.25248 4.31681 4.37181 4.42385 4.47656 4.54468 4.56196 4.69798 4.84463 4.87204 5.00389 5.01280 5.05660 5.09262 5.09971 5.22805 5.30270 5.49522 5.54787 5.56135 5.76117 5.93809 6.54175 6.68207 6.89540 7.33600 7.48654 7.60975 8.62514 9.29580 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.037347 B = 0.003263 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.547520 B = 8579.303727 C = 8924.993033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.718 5.718 4 C 0.501 3.499 5 O -0.560 6.560 6 C -0.147 4.147 7 C 0.496 3.504 8 O -0.551 6.551 9 N -0.613 5.613 10 C 0.069 3.931 11 C 0.132 3.868 12 C 0.141 3.859 13 H 0.059 0.941 14 C -0.132 4.132 15 C 0.144 3.856 16 N -0.629 5.629 17 C -0.222 4.222 18 H 0.093 0.907 19 C -0.075 4.075 20 N -0.959 5.959 21 Si 0.983 3.017 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.261 1.261 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.419 0.581 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.036 0.964 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.148 2.505 5.327 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 N -0.373 5.373 4 C 0.286 3.714 5 O -0.437 6.437 6 C -0.189 4.189 7 C 0.283 3.717 8 O -0.427 6.427 9 N -0.348 5.348 10 C -0.072 4.072 11 C 0.007 3.993 12 C 0.035 3.965 13 H 0.077 0.923 14 C -0.170 4.170 15 C 0.018 3.982 16 N -0.356 5.356 17 C -0.349 4.349 18 H 0.110 0.890 19 C -0.268 4.268 20 N -0.608 5.608 21 Si 0.811 3.189 22 H -0.215 1.215 23 H -0.223 1.223 24 H -0.185 1.185 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.257 0.743 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -27.958 1.406 5.420 28.513 hybrid contribution 1.246 0.417 0.000 1.314 sum -26.711 1.824 5.420 27.317 Atomic orbital electron populations 1.21931 0.91365 1.04052 1.03600 1.21308 0.96437 0.82855 1.00810 1.45885 1.06105 1.09644 1.75714 1.20700 0.82834 0.91590 0.76238 1.90882 1.56338 1.47653 1.48784 1.21669 0.91413 0.95601 1.10186 1.20879 0.91002 0.83130 0.76686 1.90864 1.70765 1.32377 1.48717 1.47954 1.05695 1.07501 1.73625 1.22168 0.97997 0.83633 1.03436 1.21381 0.79717 1.01572 0.96615 1.22444 0.84854 0.93885 0.95364 0.92341 1.23271 0.97473 0.96657 0.99634 1.22060 0.94949 0.90955 0.90191 1.45898 1.01944 1.52647 1.35097 1.19348 0.85758 1.17185 1.12658 0.88959 1.25748 0.99317 1.01444 1.00258 1.70065 1.16265 1.40860 1.33592 0.85005 0.78297 0.78478 0.77105 1.21521 1.22292 1.18543 0.90789 0.90280 0.90693 0.93474 0.93356 0.74264 0.81803 0.82155 0.91252 0.87241 0.90723 0.93290 0.90329 0.91300 0.92356 0.96051 0.94536 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.03 71.98 0.72 -0.25 16 2 C 0.11 1.65 6.39 86.38 0.55 2.20 16 3 N -0.72 -9.82 5.56 -463.07 -2.57 -12.39 16 4 C 0.50 11.64 7.82 87.65 0.69 12.33 16 5 O -0.56 -21.32 14.18 20.41 0.29 -21.03 16 6 C -0.15 -2.27 4.77 29.10 0.14 -2.13 16 7 C 0.50 14.66 7.67 87.66 0.67 15.33 16 8 O -0.55 -23.83 13.22 20.43 0.27 -23.56 16 9 N -0.61 -16.50 2.87 -846.75 -2.43 -18.93 16 10 C 0.07 0.98 10.25 127.77 1.31 2.29 16 11 C 0.13 4.94 5.40 86.38 0.47 5.41 16 12 C 0.14 6.08 4.31 41.70 0.18 6.26 16 13 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.13 -6.05 7.48 30.84 0.23 -5.82 16 15 C 0.14 7.70 7.48 83.18 0.62 8.32 16 16 N -0.63 -34.20 3.65 -714.47 -2.61 -36.81 16 17 C -0.22 -12.72 10.55 84.03 0.89 -11.84 16 18 H 0.09 4.90 7.83 -2.91 -0.02 4.87 16 19 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 20 N -0.96 -61.19 11.45 21.65 0.25 -60.95 16 21 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.42 1.88 8.47 -92.71 -0.79 1.09 16 31 H 0.16 1.00 7.40 -2.39 -0.02 0.99 16 32 H 0.16 1.18 8.11 -2.38 -0.02 1.16 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.11 0.59 6.53 -2.39 -0.02 0.58 16 35 H 0.07 1.09 7.87 -2.38 -0.02 1.07 16 36 H 0.05 2.20 7.11 -2.39 -0.02 2.18 16 37 H 0.08 2.82 7.89 -2.39 -0.02 2.80 16 38 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.06 2.96 7.91 -2.39 -0.02 2.94 16 40 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.04 2.19 6.99 -2.39 -0.02 2.18 16 42 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -91.98 347.13 2.38 -89.60 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.22 Total: 6.93 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 6.93 Total: 28.09 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -7.37 Total: -129.08 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: 0.56 Total: -44.60 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -91.98 2.38 -89.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233819701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.179 kcal (2) G-P(sol) polarization free energy of solvation -91.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds