Wall clock time and date at job start Tue Mar 31 2020 03:09:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.36941 * 119.99710 * 2 1
4 4 H 1.08003 * 119.99917 * 202.35035 * 3 2 1
5 5 C 1.38815 * 119.99735 * 22.34994 * 3 2 1
6 6 N 1.31614 * 120.00193 * 11.34353 * 5 3 2
7 7 Si 1.86801 * 119.99656 * 191.34318 * 5 3 2
8 8 H 1.48505 * 109.47001 * 90.00129 * 7 5 3
9 9 H 1.48502 * 109.47025 * 209.99890 * 7 5 3
10 10 H 1.48501 * 109.47254 * 330.00165 * 7 5 3
11 11 C 1.46498 * 120.00526 * 180.02562 * 2 1 3
12 12 C 1.53002 * 109.46908 * 269.99794 * 11 2 1
13 13 C 1.52997 * 109.46781 * 179.97438 * 12 11 2
14 14 N 1.46501 * 109.47187 * 179.97438 * 13 12 11
15 15 C 1.34776 * 120.00577 * 179.97438 * 14 13 12
16 16 O 1.21279 * 119.99794 * 0.02562 * 15 14 13
17 17 C 1.50698 * 120.00132 * 179.97438 * 15 14 13
18 18 N 1.46497 * 109.46901 * 180.02562 * 17 15 14
19 19 C 1.34775 * 119.99932 * 180.02562 * 18 17 15
20 20 O 1.21283 * 120.00128 * 0.02562 * 19 18 17
21 21 C 1.50700 * 120.00093 * 180.02562 * 19 18 17
22 22 C 1.53004 * 117.49676 * 248.61941 * 21 19 18
23 23 C 1.52998 * 59.99867 * 252.50759 * 22 21 19
24 24 H 1.09011 * 109.46914 * 274.20627 * 1 2 3
25 25 H 1.08999 * 109.47909 * 34.20746 * 1 2 3
26 26 H 1.09001 * 109.47011 * 154.21219 * 1 2 3
27 27 H 0.97004 * 119.99895 * 180.02562 * 6 5 3
28 28 H 1.08996 * 109.47418 * 149.99463 * 11 2 1
29 29 H 1.08999 * 109.46632 * 29.99149 * 11 2 1
30 30 H 1.09004 * 109.47219 * 59.99856 * 12 11 2
31 31 H 1.08996 * 109.46847 * 299.99916 * 12 11 2
32 32 H 1.08996 * 109.47333 * 59.99797 * 13 12 11
33 33 H 1.09003 * 109.47328 * 299.99374 * 13 12 11
34 34 H 0.97003 * 119.99744 * 0.02562 * 14 13 12
35 35 H 1.09004 * 109.47096 * 60.00371 * 17 15 14
36 36 H 1.08992 * 109.47280 * 299.99977 * 17 15 14
37 37 H 0.96997 * 120.00224 * 0.02562 * 18 17 15
38 38 H 1.09000 * 115.55112 * 34.32344 * 21 19 18
39 39 H 1.08998 * 117.49988 * 359.97438 * 22 21 19
40 40 H 1.09005 * 117.49693 * 145.02030 * 22 21 19
41 41 H 1.09003 * 117.49919 * 252.50598 * 23 22 21
42 42 H 1.08999 * 117.51613 * 107.48500 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1860 0.0000
4 1 3.1688 1.2211 -0.3557
5 6 1.5337 2.3429 0.4572
6 7 0.3840 2.2690 1.0937
7 14 2.3365 4.0048 0.1689
8 1 1.8676 4.5633 -1.1248
9 1 1.9679 4.9303 1.2702
10 1 3.8121 3.8420 0.1320
11 6 2.1976 -1.2686 -0.0006
12 6 2.4527 -1.7109 1.4418
13 6 3.2172 -3.0361 1.4411
14 7 3.4620 -3.4593 2.8222
15 6 4.1238 -4.6074 3.0680
16 8 4.5172 -5.2899 2.1459
17 6 4.3761 -5.0423 4.4886
18 7 5.1081 -6.3113 4.4881
19 6 5.4454 -6.8952 5.6550
20 8 5.1426 -6.3703 6.7056
21 6 6.1989 -8.2003 5.6545
22 6 5.4577 -9.4441 6.1492
23 6 6.5526 -8.8124 7.0113
24 1 -0.3633 0.0754 1.0250
25 1 -0.3635 0.8498 -0.5777
26 1 -0.3633 -0.9253 -0.4471
27 1 -0.0465 3.0775 1.4128
28 1 3.1499 -1.1381 -0.5144
29 1 1.6085 -2.0281 -0.5146
30 1 1.5002 -1.8415 1.9556
31 1 3.0417 -0.9514 1.9558
32 1 4.1695 -2.9060 0.9272
33 1 2.6277 -3.7955 0.9272
34 1 3.1471 -2.9136 3.5597
35 1 3.4241 -5.1718 5.0035
36 1 4.9663 -4.2831 5.0017
37 1 5.3500 -6.7313 3.6479
38 1 6.9139 -8.3301 4.8421
39 1 4.4254 -9.3183 6.4755
40 1 5.6851 -10.3924 5.6622
41 1 7.5001 -9.3452 7.0915
42 1 6.2407 -8.2710 7.9044
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001234391058.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:09:19
Heat of formation + Delta-G solvation = -55.660139 kcal
Electronic energy + Delta-G solvation = -21260.913989 eV
Core-core repulsion = 17855.407263 eV
Total energy + Delta-G solvation = -3405.506725 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 283.168 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.37743 -40.46180 -37.99048 -37.16833 -36.30663 -35.50057 -33.79589 -31.90046
-29.55431 -27.93435 -26.78617 -24.84314 -23.46204 -23.28788 -22.19313 -21.51254
-21.15428 -18.92135 -18.76553 -17.73262 -17.44427 -17.14326 -16.87443 -16.37230
-16.26771 -15.87700 -15.55767 -15.17511 -15.05085 -14.76958 -14.49281 -14.26041
-13.75161 -13.54163 -13.26133 -12.99824 -12.81418 -12.69939 -12.45469 -12.43412
-12.27954 -12.02050 -11.86626 -11.55865 -11.47885 -11.45586 -11.17390 -11.04509
-10.63866 -10.34287 -10.12868 -8.79643 -7.82361 -5.30152 1.37491 1.45319
1.46892 1.48085 1.56437 1.70850 2.38165 2.51839 2.91679 3.31887
3.53503 3.66985 3.72913 3.86423 3.98839 4.12718 4.20101 4.26949
4.29252 4.33975 4.50261 4.67462 4.75136 4.80819 4.87570 4.91595
4.91941 5.02527 5.19003 5.24495 5.30372 5.31307 5.36550 5.48914
5.65403 5.74671 6.34190 6.38516 6.41754 7.03909 7.10256 7.16463
7.88913 8.31710 9.21104
Molecular weight = 283.17amu
Principal moments of inertia in cm(-1)
A = 0.035298 B = 0.002271 C = 0.002219
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 793.059761 B =12328.515546 C =12616.776542
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.176 3.824
2 N -0.621 5.621
3 C -0.259 4.259
4 H 0.072 0.928
5 C -0.056 4.056
6 N -0.939 5.939
7 Si 0.967 3.033
8 H -0.288 1.288
9 H -0.296 1.296
10 H -0.268 1.268
11 C 0.150 3.850
12 C -0.131 4.131
13 C 0.133 3.867
14 N -0.713 5.713
15 C 0.512 3.488
16 O -0.573 6.573
17 C 0.102 3.898
18 N -0.710 5.710
19 C 0.540 3.460
20 O -0.582 6.582
21 C -0.204 4.204
22 C -0.142 4.142
23 C -0.150 4.150
24 H 0.004 0.996
25 H 0.015 0.985
26 H 0.030 0.970
27 H 0.247 0.753
28 H 0.050 0.950
29 H 0.060 0.940
30 H 0.055 0.945
31 H 0.050 0.950
32 H 0.064 0.936
33 H 0.069 0.931
34 H 0.415 0.585
35 H 0.110 0.890
36 H 0.109 0.891
37 H 0.417 0.583
38 H 0.149 0.851
39 H 0.089 0.911
40 H 0.131 0.869
41 H 0.127 0.873
42 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.112 -21.905 7.841 25.368
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 N -0.344 5.344
3 C -0.389 4.389
4 H 0.089 0.911
5 C -0.250 4.250
6 N -0.586 5.586
7 Si 0.796 3.204
8 H -0.215 1.215
9 H -0.223 1.223
10 H -0.193 1.193
11 C 0.023 3.977
12 C -0.172 4.172
13 C 0.009 3.991
14 N -0.365 5.365
15 C 0.298 3.702
16 O -0.453 6.453
17 C -0.025 4.025
18 N -0.364 5.364
19 C 0.329 3.671
20 O -0.462 6.462
21 C -0.225 4.225
22 C -0.180 4.180
23 C -0.187 4.187
24 H 0.022 0.978
25 H 0.034 0.966
26 H 0.049 0.951
27 H 0.056 0.944
28 H 0.068 0.932
29 H 0.079 0.921
30 H 0.074 0.926
31 H 0.069 0.931
32 H 0.082 0.918
33 H 0.088 0.912
34 H 0.251 0.749
35 H 0.128 0.872
36 H 0.126 0.874
37 H 0.256 0.744
38 H 0.166 0.834
39 H 0.107 0.893
40 H 0.149 0.851
41 H 0.145 0.855
42 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 10.056 -21.851 7.929 25.327
hybrid contribution -0.097 1.599 -0.083 1.604
sum 9.959 -20.252 7.846 23.893
Atomic orbital electron populations
1.20558 0.82760 0.95962 0.97587 1.44224 1.02216 1.01844 1.86109
1.19549 0.98104 0.86625 1.34656 0.91072 1.25780 0.98522 1.01795
0.98950 1.70225 1.19218 1.27353 1.41813 0.85265 0.78454 0.79995
0.76721 1.21483 1.22265 1.19309 1.20906 0.96034 0.86770 0.93961
1.22212 0.99417 0.94780 1.00780 1.21266 0.99920 0.95709 0.82179
1.45965 1.57021 1.23407 1.10083 1.20687 0.77326 0.80920 0.91254
1.90677 1.52760 1.54893 1.46964 1.21094 1.00039 0.88145 0.93250
1.45663 1.57696 1.23173 1.09896 1.20232 0.78287 0.86074 0.82533
1.90691 1.56726 1.66166 1.32649 1.22262 1.05458 0.91631 1.03111
1.23063 0.97617 0.95226 1.02068 1.23035 1.01311 1.01871 0.92471
0.97753 0.96577 0.95134 0.94372 0.93174 0.92140 0.92646 0.93080
0.91768 0.91238 0.74855 0.87241 0.87351 0.74387 0.83354 0.89258
0.85080 0.85470 0.89380
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.57 9.01 127.77 1.15 9.72 16
2 N -0.62 -30.23 2.93 -726.92 -2.13 -32.36 16
3 C -0.26 -13.91 9.67 84.03 0.81 -13.10 16
4 H 0.07 3.71 7.84 -2.91 -0.02 3.68 16
5 C -0.06 -3.08 5.13 84.86 0.44 -2.65 16
6 N -0.94 -54.89 10.58 21.65 0.23 -54.66 16
7 Si 0.97 44.65 29.57 68.60 2.03 46.67 16
8 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16
9 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16
10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
11 C 0.15 5.60 5.71 86.38 0.49 6.10 16
12 C -0.13 -4.24 5.65 30.59 0.17 -4.06 16
13 C 0.13 3.47 5.67 86.38 0.49 3.96 16
14 N -0.71 -15.72 5.56 -463.07 -2.57 -18.29 16
15 C 0.51 11.55 7.90 87.66 0.69 12.24 16
16 O -0.57 -16.33 15.67 -3.03 -0.05 -16.38 16
17 C 0.10 1.88 6.15 85.63 0.53 2.41 16
18 N -0.71 -13.29 5.53 -466.80 -2.58 -15.87 16
19 C 0.54 11.09 7.61 87.66 0.67 11.76 16
20 O -0.58 -16.23 16.26 -3.04 -0.05 -16.28 16
21 C -0.20 -2.74 6.19 -11.54 -0.07 -2.81 16
22 C -0.14 -1.52 10.23 30.59 0.31 -1.20 16
23 C -0.15 -1.82 10.04 30.59 0.31 -1.51 16
24 H 0.00 0.22 7.42 -2.38 -0.02 0.20 16
25 H 0.02 0.84 7.19 -2.39 -0.02 0.82 16
26 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16
27 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16
28 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16
29 H 0.06 2.01 7.86 -2.39 -0.02 1.99 16
30 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16
31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
34 H 0.42 7.60 8.47 -92.71 -0.79 6.82 16
35 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16
36 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16
37 H 0.42 7.24 7.44 -92.71 -0.69 6.55 16
38 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16
39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
40 H 0.13 0.73 8.14 -2.38 -0.02 0.71 16
41 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16
42 H 0.09 1.46 7.67 -2.39 -0.02 1.44 16
Total: -1.00 -70.65 355.89 0.42 -70.23
By element:
Atomic # 1 Polarization: 16.55 SS G_CDS: -0.45 Total: 16.10 kcal
Atomic # 6 Polarization: 14.86 SS G_CDS: 5.99 Total: 20.85 kcal
Atomic # 7 Polarization: -114.14 SS G_CDS: -7.05 Total: -121.19 kcal
Atomic # 8 Polarization: -32.56 SS G_CDS: -0.10 Total: -32.66 kcal
Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal
Total: -70.65 0.42 -70.23 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001234391058.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.568 kcal
(2) G-P(sol) polarization free energy of solvation -70.649 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.081 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.228 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.660 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds