Wall clock time and date at job start Tue Mar 31 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99915 * 2 1 4 4 C 1.53235 * 109.34089 * 187.25745 * 3 2 1 5 5 N 1.47078 * 108.51875 * 306.16805 * 4 3 2 6 6 C 1.34777 * 120.88364 * 231.18486 * 5 4 3 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00597 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99622 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46792 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46980 * 119.99883 * 18 16 14 21 21 H 1.48498 * 109.46996 * 239.99688 * 18 16 14 22 22 C 1.47083 * 118.23673 * 51.46281 * 5 4 3 23 23 C 1.46894 * 111.00366 * 124.30150 * 2 1 3 24 24 H 1.09000 * 109.47675 * 60.00069 * 1 2 3 25 25 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47261 * 299.99596 * 1 2 3 27 27 H 1.09000 * 109.48797 * 67.29580 * 3 2 1 28 28 H 1.09005 * 109.51447 * 307.22928 * 3 2 1 29 29 H 1.09004 * 109.62945 * 186.46254 * 4 3 2 30 30 H 1.08996 * 109.79112 * 65.97391 * 4 3 2 31 31 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 32 32 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 33 33 H 0.96996 * 119.99606 * 0.02562 * 9 8 6 34 34 H 1.09001 * 109.47380 * 300.00190 * 12 10 9 35 35 H 1.09002 * 109.47060 * 60.00278 * 12 10 9 36 36 H 1.09001 * 109.47289 * 299.99918 * 13 12 10 37 37 H 1.09002 * 109.47153 * 60.00002 * 13 12 10 38 38 H 0.96993 * 120.00405 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.63429 * 68.24707 * 22 5 4 40 40 H 1.09000 * 109.62775 * 188.83040 * 22 5 4 41 41 H 1.08997 * 109.49334 * 292.70971 * 23 2 1 42 42 H 1.09004 * 109.48916 * 52.75787 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5163 1.3313 -0.1827 5 7 4.0869 0.4462 0.8441 6 6 5.1055 0.8584 1.6244 7 8 5.5635 1.9727 1.4851 8 6 5.6754 -0.0653 2.6699 9 7 6.7636 0.6123 3.3793 10 6 7.4253 -0.0255 4.3650 11 8 7.1205 -1.1605 4.6645 12 6 8.5450 0.6713 5.0943 13 6 9.1236 -0.2664 6.1558 14 6 10.2428 0.4306 6.8855 15 1 10.5147 1.4412 6.6185 16 6 10.9205 -0.2222 7.8933 17 7 10.5899 -1.4530 8.2182 18 14 12.3084 0.6416 8.7974 19 1 12.4817 2.0098 8.2468 20 1 11.9792 0.7281 10.2429 21 1 13.5672 -0.1265 8.6215 22 6 3.5205 -0.9031 0.9925 23 6 1.9955 -0.7728 1.1328 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7555 1.8531 0.9479 28 1 1.5456 1.9342 -0.8181 29 1 3.9254 2.3352 -0.0690 30 1 3.7590 0.9470 -1.1733 31 1 6.0594 -0.9651 2.1894 32 1 4.8938 -0.3374 3.3792 33 1 7.0071 1.5202 3.1400 34 1 9.3269 0.9430 4.3851 35 1 8.1612 1.5714 5.5744 36 1 8.3419 -0.5385 6.8651 37 1 9.5075 -1.1663 5.6754 38 1 11.0668 -1.9124 8.9268 39 1 3.7605 -1.4999 0.1126 40 1 3.9323 -1.3771 1.8835 41 1 1.7555 -0.2613 2.0649 42 1 1.5453 -1.7655 1.1364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263969720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:42 Heat of formation + Delta-G solvation = -67.352314 kcal Electronic energy + Delta-G solvation = -21958.134394 eV Core-core repulsion = 18552.120658 eV Total energy + Delta-G solvation = -3406.013736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67552 -39.11930 -38.23570 -35.04205 -34.23443 -33.42032 -31.79644 -31.00637 -29.43407 -27.75765 -25.44296 -24.69468 -24.03641 -21.92401 -21.26258 -19.87576 -19.27338 -17.57476 -16.85698 -16.43642 -16.16847 -15.71739 -15.56970 -15.42611 -15.16044 -15.01108 -14.88308 -14.36850 -13.95557 -13.67034 -13.23648 -13.00039 -12.83813 -12.53321 -12.31831 -12.15569 -11.96033 -11.80645 -11.72823 -11.56974 -11.12793 -10.92237 -10.56063 -10.14504 -9.93203 -9.65243 -9.26251 -9.19691 -9.01561 -8.88657 -8.77996 -8.29928 -5.94085 -3.97995 2.26831 2.45120 3.23111 3.34653 3.38020 3.41534 3.45239 3.57024 4.10279 4.38450 4.46002 4.50122 4.59205 4.74203 4.81640 4.97191 5.04748 5.07368 5.17848 5.22516 5.24398 5.33663 5.38413 5.38829 5.41028 5.58018 5.68858 6.02355 6.27042 6.29723 6.40855 6.46375 6.57812 6.92497 6.98506 7.76182 7.77336 7.88629 7.89816 8.09314 8.41185 8.74917 9.10651 9.65457 11.16964 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.046526 B = 0.002525 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.675889 B =11084.436631 C =11471.671638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.041 3.959 4 C 0.116 3.884 5 N -0.614 5.614 6 C 0.514 3.486 7 O -0.535 6.535 8 C 0.102 3.898 9 N -0.734 5.734 10 C 0.514 3.486 11 O -0.537 6.537 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.107 3.893 23 C 0.038 3.962 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.409 0.591 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.260 0.740 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.990 3.424 -19.234 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.088 4.088 4 C -0.006 4.006 5 N -0.349 5.349 6 C 0.302 3.698 7 O -0.412 6.412 8 C -0.026 4.026 9 N -0.392 5.392 10 C 0.302 3.698 11 O -0.412 6.412 12 C -0.169 4.169 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.016 4.016 23 C -0.090 4.090 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.246 0.754 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.753 2.827 -19.384 28.538 hybrid contribution 0.377 1.108 1.076 1.590 sum -20.375 3.935 -18.308 27.674 Atomic orbital electron populations 1.22372 0.86680 1.02396 1.00869 1.61944 1.08156 1.13616 1.43153 1.22514 0.95259 0.89536 1.01490 1.21700 0.91750 0.95990 0.91181 1.48105 1.34708 1.15726 1.36393 1.20734 0.79315 0.87951 0.81766 1.90689 1.59741 1.21041 1.69688 1.20995 0.92233 0.95354 0.93984 1.46034 1.35759 1.19424 1.37951 1.21615 0.83064 0.86731 0.78350 1.90662 1.66782 1.18613 1.65169 1.21870 0.94333 1.01072 0.99584 1.18914 0.95497 0.93794 0.91883 1.21273 1.16936 1.00244 1.17914 0.92491 1.25031 0.97412 0.94897 0.97125 1.70008 1.41184 1.11359 1.30376 0.86528 0.82107 0.79694 0.79592 1.19732 1.21047 1.21032 1.22049 0.92625 0.83296 1.03602 1.22603 0.95033 0.99316 0.92080 0.91118 0.91055 0.95506 0.94180 0.89338 0.88445 0.90514 0.88663 0.88849 0.75414 0.90013 0.90049 0.95789 0.95761 0.93036 0.89871 0.88636 0.93973 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.58 60.06 0.58 0.70 16 2 N -0.54 -3.62 4.88 -242.31 -1.18 -4.81 16 3 C 0.04 0.28 5.62 -3.70 -0.02 0.25 16 4 C 0.12 0.94 6.60 -3.61 -0.02 0.92 16 5 N -0.61 -5.69 3.00 -172.18 -0.52 -6.21 16 6 C 0.51 6.17 7.78 -10.98 -0.09 6.08 16 7 O -0.54 -7.97 15.12 5.56 0.08 -7.88 16 8 C 0.10 1.28 4.52 -5.19 -0.02 1.26 16 9 N -0.73 -11.36 5.53 -61.47 -0.34 -11.70 16 10 C 0.51 10.10 7.83 -10.99 -0.09 10.02 16 11 O -0.54 -12.45 15.98 5.56 0.09 -12.36 16 12 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 13 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 14 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.61 13.29 55.43 0.74 -26.88 16 18 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.11 0.74 6.53 -3.36 -0.02 0.72 16 23 C 0.04 0.24 5.64 -3.47 -0.02 0.22 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.47 8.11 -51.93 -0.42 0.05 16 29 H 0.10 0.89 7.06 -51.93 -0.37 0.53 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.10 1.13 7.99 -51.93 -0.41 0.72 16 32 H 0.09 1.11 7.67 -51.93 -0.40 0.71 16 33 H 0.41 5.94 7.44 -40.82 -0.30 5.63 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.60 6.02 -51.93 -0.31 0.29 16 41 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.45 8.06 -51.93 -0.42 0.03 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -35.60 345.03 -8.16 -43.77 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.82 Total: -0.39 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.39 Total: 4.36 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -1.30 Total: -49.59 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.17 Total: -20.24 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.60 -8.16 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263969720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.585 kcal (2) G-P(sol) polarization free energy of solvation -35.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds