Wall clock time and date at job start Tue Mar 31 2020 03:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99915 * 2 1 4 4 C 1.53235 * 109.34089 * 187.25745 * 3 2 1 5 5 N 1.47078 * 108.51875 * 306.16805 * 4 3 2 6 6 C 1.34777 * 120.88364 * 231.18486 * 5 4 3 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00597 * 0.02562 * 10 9 8 12 12 C 1.50701 * 119.99622 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47212 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46792 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46980 * 119.99883 * 18 16 14 21 21 H 1.48498 * 109.46996 * 239.99688 * 18 16 14 22 22 C 1.47083 * 118.23673 * 51.46281 * 5 4 3 23 23 C 1.46894 * 111.00366 * 124.30150 * 2 1 3 24 24 H 1.09000 * 109.47675 * 60.00069 * 1 2 3 25 25 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47261 * 299.99596 * 1 2 3 27 27 H 1.09000 * 109.48797 * 67.29580 * 3 2 1 28 28 H 1.09005 * 109.51447 * 307.22928 * 3 2 1 29 29 H 1.09004 * 109.62945 * 186.46254 * 4 3 2 30 30 H 1.08996 * 109.79112 * 65.97391 * 4 3 2 31 31 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 32 32 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 33 33 H 0.96996 * 119.99606 * 0.02562 * 9 8 6 34 34 H 1.09001 * 109.47380 * 300.00190 * 12 10 9 35 35 H 1.09002 * 109.47060 * 60.00278 * 12 10 9 36 36 H 1.09001 * 109.47289 * 299.99918 * 13 12 10 37 37 H 1.09002 * 109.47153 * 60.00002 * 13 12 10 38 38 H 0.96993 * 120.00405 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.63429 * 68.24707 * 22 5 4 40 40 H 1.09000 * 109.62775 * 188.83040 * 22 5 4 41 41 H 1.08997 * 109.49334 * 292.70971 * 23 2 1 42 42 H 1.09004 * 109.48916 * 52.75787 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5163 1.3313 -0.1827 5 7 4.0869 0.4462 0.8441 6 6 5.1055 0.8584 1.6244 7 8 5.5635 1.9727 1.4851 8 6 5.6754 -0.0653 2.6699 9 7 6.7636 0.6123 3.3793 10 6 7.4253 -0.0255 4.3650 11 8 7.1205 -1.1605 4.6645 12 6 8.5450 0.6713 5.0943 13 6 9.1236 -0.2664 6.1558 14 6 10.2428 0.4306 6.8855 15 1 10.5147 1.4412 6.6185 16 6 10.9205 -0.2222 7.8933 17 7 10.5899 -1.4530 8.2182 18 14 12.3084 0.6416 8.7974 19 1 12.4817 2.0098 8.2468 20 1 11.9792 0.7281 10.2429 21 1 13.5672 -0.1265 8.6215 22 6 3.5205 -0.9031 0.9925 23 6 1.9955 -0.7728 1.1328 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7555 1.8531 0.9479 28 1 1.5456 1.9342 -0.8181 29 1 3.9254 2.3352 -0.0690 30 1 3.7590 0.9470 -1.1733 31 1 6.0594 -0.9651 2.1894 32 1 4.8938 -0.3374 3.3792 33 1 7.0071 1.5202 3.1400 34 1 9.3269 0.9430 4.3851 35 1 8.1612 1.5714 5.5744 36 1 8.3419 -0.5385 6.8651 37 1 9.5075 -1.1663 5.6754 38 1 11.0668 -1.9124 8.9268 39 1 3.7605 -1.4999 0.1126 40 1 3.9323 -1.3771 1.8835 41 1 1.7555 -0.2613 2.0649 42 1 1.5453 -1.7655 1.1364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263969720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:41 Heat of formation + Delta-G solvation = -94.922918 kcal Electronic energy + Delta-G solvation = -21959.329945 eV Core-core repulsion = 18552.120658 eV Total energy + Delta-G solvation = -3407.209287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59242 -40.48975 -39.08186 -35.75851 -35.71656 -35.42452 -33.07005 -32.35683 -30.26544 -28.89056 -27.21331 -25.30862 -24.74143 -23.54879 -22.23492 -21.36012 -20.11979 -18.97622 -18.23301 -17.78682 -17.19522 -17.06081 -16.47973 -16.37345 -16.27239 -16.12470 -15.81730 -15.68574 -14.94653 -14.91949 -14.32271 -14.22883 -14.15478 -13.66064 -13.51873 -13.21859 -13.06053 -12.83603 -12.80108 -12.45460 -12.36648 -12.31538 -12.12126 -11.92369 -11.64455 -11.28201 -11.10385 -10.83443 -10.56936 -10.24362 -9.95281 -9.35191 -8.17466 -6.30832 1.32553 1.42791 1.44007 1.57069 1.59450 1.65785 2.29676 2.45738 2.89031 3.15526 3.24044 3.81063 3.90074 4.01249 4.05947 4.17202 4.20632 4.28646 4.30081 4.45122 4.52872 4.55600 4.62464 4.62879 4.70281 4.75390 4.81768 5.00634 5.04063 5.05872 5.24586 5.35563 5.51601 5.64741 5.86414 5.92114 5.96063 6.17504 6.19295 6.48604 6.86353 6.87179 7.24269 7.39006 8.95319 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.046526 B = 0.002525 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.675889 B =11084.436631 C =11471.671638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.046 3.954 4 C 0.115 3.885 5 N -0.608 5.608 6 C 0.517 3.483 7 O -0.569 6.569 8 C 0.100 3.900 9 N -0.717 5.717 10 C 0.519 3.481 11 O -0.579 6.579 12 C -0.121 4.121 13 C 0.043 3.957 14 C -0.543 4.543 15 H 0.073 0.927 16 C -0.007 4.007 17 N -0.936 5.936 18 Si 0.973 3.027 19 H -0.255 1.255 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.103 3.897 23 C 0.040 3.960 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.023 0.977 27 H 0.028 0.972 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.416 0.584 34 H 0.103 0.897 35 H 0.102 0.898 36 H -0.014 1.014 37 H -0.013 1.013 38 H 0.263 0.737 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.032 0.968 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.413 4.549 -20.313 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.082 4.082 4 C -0.007 4.007 5 N -0.341 5.341 6 C 0.305 3.695 7 O -0.448 6.448 8 C -0.027 4.027 9 N -0.373 5.373 10 C 0.307 3.693 11 O -0.458 6.458 12 C -0.160 4.160 13 C 0.005 3.995 14 C -0.581 4.581 15 H 0.092 0.908 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.797 3.203 19 H -0.179 1.179 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.019 4.019 23 C -0.089 4.089 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.255 0.745 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.050 0.950 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.228 3.974 -20.521 29.791 hybrid contribution 0.405 0.716 1.330 1.564 sum -20.822 4.691 -19.191 28.703 Atomic orbital electron populations 1.22416 0.85625 1.03106 1.01113 1.61984 1.09138 1.13288 1.43114 1.22467 0.94265 0.89963 1.01544 1.21798 0.92594 0.95197 0.91156 1.48186 1.33573 1.16729 1.35593 1.20542 0.79810 0.87259 0.81867 1.90676 1.61124 1.22229 1.70788 1.21167 0.91576 0.95599 0.94350 1.45759 1.35515 1.19490 1.36522 1.21238 0.83014 0.86041 0.78957 1.90651 1.68090 1.20333 1.66753 1.21647 0.95525 1.00186 0.98674 1.18697 0.94433 0.93784 0.92582 1.21743 1.17218 1.01008 1.18122 0.90847 1.26115 1.00488 0.95597 0.98207 1.70171 1.42866 1.13343 1.31228 0.85279 0.78030 0.79011 0.77953 1.17887 1.20557 1.20540 1.22264 0.93098 0.82088 1.04487 1.22623 0.94520 1.00154 0.91604 0.90272 0.90154 0.95860 0.95417 0.87632 0.89695 0.89487 0.87588 0.87856 0.74543 0.87916 0.87954 0.99527 0.99503 0.92819 0.88651 0.88081 0.94971 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.58 127.69 1.22 1.43 16 2 N -0.55 -6.22 4.88 -920.54 -4.49 -10.71 16 3 C 0.05 0.56 5.62 86.38 0.49 1.04 16 4 C 0.11 1.71 6.60 86.35 0.57 2.28 16 5 N -0.61 -10.45 3.00 -817.06 -2.45 -12.90 16 6 C 0.52 11.89 7.78 87.66 0.68 12.57 16 7 O -0.57 -16.56 15.12 -3.02 -0.05 -16.60 16 8 C 0.10 2.41 4.52 85.63 0.39 2.80 16 9 N -0.72 -21.51 5.53 -466.78 -2.58 -24.10 16 10 C 0.52 20.38 7.83 87.66 0.69 21.07 16 11 O -0.58 -27.45 15.98 -3.03 -0.05 -27.49 16 12 C -0.12 -5.01 5.64 29.85 0.17 -4.84 16 13 C 0.04 2.40 4.26 29.85 0.13 2.52 16 14 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 15 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 16 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 17 N -0.94 -59.45 13.29 21.45 0.28 -59.17 16 18 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 19 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 C 0.10 1.24 6.53 86.50 0.57 1.80 16 23 C 0.04 0.43 5.64 86.54 0.49 0.92 16 24 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 26 H 0.02 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.11 0.91 8.11 -2.38 -0.02 0.89 16 29 H 0.08 1.51 7.06 -2.39 -0.02 1.49 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 2.38 7.99 -2.39 -0.02 2.37 16 32 H 0.10 2.34 7.67 -2.39 -0.02 2.32 16 33 H 0.42 11.54 7.44 -92.71 -0.69 10.85 16 34 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 35 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 36 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 37 H -0.01 -0.85 8.10 -2.39 -0.02 -0.86 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 1.11 6.02 -2.39 -0.01 1.09 16 41 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.11 0.81 8.06 -2.38 -0.02 0.79 16 Total: -1.00 -78.28 345.03 -0.92 -79.20 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.32 Total: 14.36 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.08 Total: 10.56 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -9.24 Total: -106.87 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.09 Total: -44.10 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -78.28 -0.92 -79.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263969720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.727 kcal (2) G-P(sol) polarization free energy of solvation -78.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds